Lsi01G008780 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G008780
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	VQ domain-containing protein
Location	chr01: 7091243 .. 7091602 (-)
RNA-Seq Expression	Lsi01G008780
Synteny	Lsi01G008780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGCCGTGGAAGAAGCCGGCGATTGCTCCACTCCCACCGACTCGGCCCAGGGTTTACAAAGTCGACCCACTTAACTTTCGGGATTTGGTTCAGAAGCTCACTGGCTTGGCTGAGCTCCGATCTCCACGCCTTCAAAAAATGGCGCCACCACCGCTTGATATCTCCCGCCGCCTAGACTCGGGTTCCGCCGCCGTGGAAGCCACTCTATTTAAGGCTTCGCCGCCTGTGAAGATGGAAAATGAGGCGGTGGATGGTGGCAGCTTTCTTGAACTGAATTTGTCGCCCTTCAACAAAAATTGGTGCTCTTTCCCTGCTTTGAGCCCTGAAACTCTTGCCATTTTGGATGCAATTTAG

mRNA sequence

ATGGCGAAGCCGTGGAAGAAGCCGGCGATTGCTCCACTCCCACCGACTCGGCCCAGGGTTTACAAAGTCGACCCACTTAACTTTCGGGATTTGGTTCAGAAGCTCACTGGCTTGGCTGAGCTCCGATCTCCACGCCTTCAAAAAATGGCGCCACCACCGCTTGATATCTCCCGCCGCCTAGACTCGGGTTCCGCCGCCGTGGAAGCCACTCTATTTAAGGCTTCGCCGCCTGTGAAGATGGAAAATGAGGCGGTGGATGGTGGCAGCTTTCTTGAACTGAATTTGTCGCCCTTCAACAAAAATTGGTGCTCTTTCCCTGCTTTGAGCCCTGAAACTCTTGCCATTTTGGATGCAATTTAG

Coding sequence (CDS)

ATGGCGAAGCCGTGGAAGAAGCCGGCGATTGCTCCACTCCCACCGACTCGGCCCAGGGTTTACAAAGTCGACCCACTTAACTTTCGGGATTTGGTTCAGAAGCTCACTGGCTTGGCTGAGCTCCGATCTCCACGCCTTCAAAAAATGGCGCCACCACCGCTTGATATCTCCCGCCGCCTAGACTCGGGTTCCGCCGCCGTGGAAGCCACTCTATTTAAGGCTTCGCCGCCTGTGAAGATGGAAAATGAGGCGGTGGATGGTGGCAGCTTTCTTGAACTGAATTTGTCGCCCTTCAACAAAAATTGGTGCTCTTTCCCTGCTTTGAGCCCTGAAACTCTTGCCATTTTGGATGCAATTTAG

Protein sequence

MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRLDSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI

Homology

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BLAST of Lsi01G008780 vs. ExPASy Swiss-Prot
Match: Q9SZG3 (VQ motif-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=VQ29 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 2  AKPWKKPAI-APLPPTRPRVYKVDPLNFRDLVQKLTGLAE 41
          +KP K+PAI +PL P  P VY+V+P+NF+ LVQ+LTG  E
Sbjct: 39 SKPLKRPAISSPLNPMHPHVYRVEPVNFKVLVQRLTGAPE 78

[Close]

BLAST of Lsi01G008780 vs. ExPASy TrEMBL
Match: A0A1S3B142 (uncharacterized protein LOC103484869 OS=Cucumis melo OX=3656 GN=LOC103484869 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.6e-54
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           MAKPWKKPAIAPLPPTRPRVYKVDP+NFR LVQKLTGLAELRSPRLQKMAPPPLDISRR 
Sbjct: 52  MAKPWKKPAIAPLPPTRPRVYKVDPINFRGLVQKLTGLAELRSPRLQKMAPPPLDISRRQ 111

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
           D+ SAAVE T+FKASP +K+ENEAVDGG FLELNLSPFNKNWCSFPALSPETLAILDAI
Sbjct: 112 DACSAAVEDTVFKASPLLKVENEAVDGGGFLELNLSPFNKNWCSFPALSPETLAILDAI 170

[Close]

BLAST of Lsi01G008780 vs. ExPASy TrEMBL
Match: A0A0A0KJR2 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495810 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.1e-53
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           M KPWKKPAIAPLPPTRPRVYKVDP+NFR LVQKLTGLAELRSPRLQKMAPPPLDISRR 
Sbjct: 50  MVKPWKKPAIAPLPPTRPRVYKVDPINFRGLVQKLTGLAELRSPRLQKMAPPPLDISRRQ 109

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
           DS SAAVE T+FKAS  +K+ENEAVDGG FLELNLSPFNKNWCSFPALSPETLAILDAI
Sbjct: 110 DSCSAAVEDTVFKASSLLKVENEAVDGGGFLELNLSPFNKNWCSFPALSPETLAILDAI 168

[Close]

BLAST of Lsi01G008780 vs. ExPASy TrEMBL
Match: A0A6J1IPH4 (uncharacterized protein LOC111477640 OS=Cucurbita maxima OX=3661 GN=LOC111477640 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.5e-46
Identity = 99/119 (83.19%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           MAKPWKKPAIAPLPPTRPRVYKVDPLNFR+LVQKLTGLAELRSPRLQKMAPPPLDI+R  
Sbjct: 42  MAKPWKKPAIAPLPPTRPRVYKVDPLNFRNLVQKLTGLAELRSPRLQKMAPPPLDIARCP 101

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
            S  A VEA+  +   PV+++ EAVDGGSFLELNLSPFNKNWCSFPALSPE+LAILDAI
Sbjct: 102 VSNVAVVEASTLQPL-PVRLD-EAVDGGSFLELNLSPFNKNWCSFPALSPESLAILDAI 158

[Close]

BLAST of Lsi01G008780 vs. ExPASy TrEMBL
Match: A0A6J1GE45 (uncharacterized protein LOC111453330 OS=Cucurbita moschata OX=3662 GN=LOC111453330 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 98/119 (82.35%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           MAKPWKKPAIAPLPPTRPRVYKVDPLNFR+LVQKLTGLAELRSPRLQKMAPPPLDI+R  
Sbjct: 50  MAKPWKKPAIAPLPPTRPRVYKVDPLNFRNLVQKLTGLAELRSPRLQKMAPPPLDIARCP 109

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
            S  A VEA+  +   PV+++ EAVDGGSFLELNLSPFNKNWCSFPALSPE+LA+LDAI
Sbjct: 110 VSNVAVVEASTLQPL-PVRLD-EAVDGGSFLELNLSPFNKNWCSFPALSPESLALLDAI 166

[Close]

BLAST of Lsi01G008780 vs. ExPASy TrEMBL
Match: A0A6J1HHA9 (uncharacterized protein LOC111463479 OS=Cucurbita moschata OX=3662 GN=LOC111463479 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.1e-41
Identity = 93/119 (78.15%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           ++KPWKKPAIAPLPPTRPRVYKVD L F+DLVQKLTGL EL SPRLQKMAPPPL I+ R 
Sbjct: 47  ISKPWKKPAIAPLPPTRPRVYKVDSLKFKDLVQKLTGLPELPSPRLQKMAPPPLHIAPRQ 106

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
            SG AAVEAT F    PVK++ EA DGGSFLELNLSPFNKNW SFPALSP +LAI DAI
Sbjct: 107 GSG-AAVEATPFLHPSPVKLD-EAFDGGSFLELNLSPFNKNWFSFPALSPGSLAIFDAI 163

[Close]

BLAST of Lsi01G008780 vs. NCBI nr
Match: XP_038883814.1 (uncharacterized protein LOC120074676 [Benincasa hispida])

HSP 1 Score: 236.9 bits (603), Expect = 9.1e-59
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRR 
Sbjct: 53  MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRP 112

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
           DSGSAAVEATLFKASPPVK++NEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI
Sbjct: 113 DSGSAAVEATLFKASPPVKLDNEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 171

[Close]

BLAST of Lsi01G008780 vs. NCBI nr
Match: XP_008440419.1 (PREDICTED: uncharacterized protein LOC103484869 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           MAKPWKKPAIAPLPPTRPRVYKVDP+NFR LVQKLTGLAELRSPRLQKMAPPPLDISRR 
Sbjct: 52  MAKPWKKPAIAPLPPTRPRVYKVDPINFRGLVQKLTGLAELRSPRLQKMAPPPLDISRRQ 111

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
           D+ SAAVE T+FKASP +K+ENEAVDGG FLELNLSPFNKNWCSFPALSPETLAILDAI
Sbjct: 112 DACSAAVEDTVFKASPLLKVENEAVDGGGFLELNLSPFNKNWCSFPALSPETLAILDAI 170

[Close]

BLAST of Lsi01G008780 vs. NCBI nr
Match: XP_011657908.1 (uncharacterized protein LOC105435910 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           M KPWKKPAIAPLPPTRPRVYKVDP+NFR LVQKLTGLAELRSPRLQKMAPPPLDISRR 
Sbjct: 50  MVKPWKKPAIAPLPPTRPRVYKVDPINFRGLVQKLTGLAELRSPRLQKMAPPPLDISRRQ 109

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
           DS SAAVE T+FKAS  +K+ENEAVDGG FLELNLSPFNKNWCSFPALSPETLAILDAI
Sbjct: 110 DSCSAAVEDTVFKASSLLKVENEAVDGGGFLELNLSPFNKNWCSFPALSPETLAILDAI 168

[Close]

BLAST of Lsi01G008780 vs. NCBI nr
Match: KAE8647523.1 (hypothetical protein Csa_003873 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           M KPWKKPAIAPLPPTRPRVYKVDP+NFR LVQKLTGLAELRSPRLQKMAPPPLDISRR 
Sbjct: 3   MVKPWKKPAIAPLPPTRPRVYKVDPINFRGLVQKLTGLAELRSPRLQKMAPPPLDISRRQ 62

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
           DS SAAVE T+FKAS  +K+ENEAVDGG FLELNLSPFNKNWCSFPALSPETLAILDAI
Sbjct: 63  DSCSAAVEDTVFKASSLLKVENEAVDGGGFLELNLSPFNKNWCSFPALSPETLAILDAI 121

[Close]

BLAST of Lsi01G008780 vs. NCBI nr
Match: XP_022977273.1 (uncharacterized protein LOC111477640 [Cucurbita maxima])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 99/119 (83.19%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MAKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRL 60
           MAKPWKKPAIAPLPPTRPRVYKVDPLNFR+LVQKLTGLAELRSPRLQKMAPPPLDI+R  
Sbjct: 42  MAKPWKKPAIAPLPPTRPRVYKVDPLNFRNLVQKLTGLAELRSPRLQKMAPPPLDIARCP 101

Query: 61  DSGSAAVEATLFKASPPVKMENEAVDGGSFLELNLSPFNKNWCSFPALSPETLAILDAI 120
            S  A VEA+  +   PV+++ EAVDGGSFLELNLSPFNKNWCSFPALSPE+LAILDAI
Sbjct: 102 VSNVAVVEASTLQPL-PVRLD-EAVDGGSFLELNLSPFNKNWCSFPALSPESLAILDAI 158

[Close]

BLAST of Lsi01G008780 vs. TAIR 10
Match: AT2G22880.1 (VQ motif-containing protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 2  AKPWKKPAIAPLPPTRPRVYKVDPLNFRDLVQKLTGLAELRSPRLQKMAPPPLDISRRLD 61
          AKPWKKP         P+VY+V+P+NF++LVQ+LTG AE     + ++   P+ IS   D
Sbjct: 23 AKPWKKPVTGLPQRMHPKVYRVEPVNFKELVQRLTG-AEDVEQEVHQVEAKPVKISD--D 82

Query: 62 SGSAAVEATLFKASP 77
          + +A      F  SP
Sbjct: 83 TTTAKDNPFAFDLSP 94

[Close]

BLAST of Lsi01G008780 vs. TAIR 10
Match: AT4G37710.1 (VQ motif-containing protein )

HSP 1 Score: 47.8 bits (112), Expect = 7.3e-06
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 2  AKPWKKPAI-APLPPTRPRVYKVDPLNFRDLVQKLTGLAE 41
          +KP K+PAI +PL P  P VY+V+P+NF+ LVQ+LTG  E
Sbjct: 39 SKPLKRPAISSPLNPMHPHVYRVEPVNFKVLVQRLTGAPE 78

The following BLAST results are available for this feature:

BLAST of Lsi01G008780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZG3	1.0e-04	57.50	VQ motif-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=VQ29 PE=1 SV=1	[more]

BLAST of Lsi01G008780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B142	5.6e-54	90.76	uncharacterized protein LOC103484869 OS=Cucumis melo OX=3656 GN=LOC103484869 PE=...	[more]
A0A0A0KJR2	6.1e-53	89.92	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495810 PE=4 SV=...	[more]
A0A6J1IPH4	9.5e-46	83.19	uncharacterized protein LOC111477640 OS=Cucurbita maxima OX=3661 GN=LOC111477640...	[more]
A0A6J1GE45	1.6e-45	82.35	uncharacterized protein LOC111453330 OS=Cucurbita moschata OX=3662 GN=LOC1114533...	[more]
A0A6J1HHA9	7.1e-41	78.15	uncharacterized protein LOC111463479 OS=Cucurbita moschata OX=3662 GN=LOC1114634...	[more]

BLAST of Lsi01G008780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883814.1	9.1e-59	97.48	uncharacterized protein LOC120074676 [Benincasa hispida]	[more]
XP_008440419.1	1.1e-53	90.76	PREDICTED: uncharacterized protein LOC103484869 [Cucumis melo]	[more]
XP_011657908.1	1.3e-52	89.92	uncharacterized protein LOC105435910 [Cucumis sativus]	[more]
KAE8647523.1	1.3e-52	89.92	hypothetical protein Csa_003873 [Cucumis sativus]	[more]
XP_022977273.1	2.0e-45	83.19	uncharacterized protein LOC111477640 [Cucurbita maxima]	[more]

BLAST of Lsi01G008780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22880.1	2.5e-06	40.00	VQ motif-containing protein	[more]
AT4G37710.1	7.3e-06	57.50	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 18..37 e-value: 3.6E-8 score: 32.8
IPR039610	VQ motif-containing protein 29	PANTHER	PTHR34794	EXPRESSED PROTEIN	coord: 2..117
None	No IPR available	PANTHER	PTHR34794:SF1	EXPRESSED PROTEIN	coord: 2..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G008780.1	Lsi01G008780.1	mRNA