Lsi01G008560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G008560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Epidermal patterning factor-like protein
Location	chr01: 6852441 .. 6853590 (-)
RNA-Seq Expression	Lsi01G008560
Synteny	Lsi01G008560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGAATTTCACTGTCTCTTTCACACCCTGCCCTCTCTCTCTCTCTGTGTGTGAGAAGAAAAGGAAAAATGGTGTGTGAGTGTAGTAGCAACAATGGCGTCATTGGCTCGCGCAGCAGAATCTTGTGTTCGACTGTTTCTCTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTTATGGCTGAAGGTAACTGGGTATCTTTTGAAATTTCAAAAGAGAGTTCAAAACTAGATTTTTATTCTTCAACTTCAATTTCAGTTAAACCGAAAATCGTTTTTCTTTGCAGGCAGATTGATTTCAGGGAGTGGCAAGGTCAGTCCAGAAACTAGCTCTTTCCTTCCTTTCTCAAATACTTCACATTTTCTATGAAAGCTTAATTAATTGAGAAGAATAATTTTGGTTTTTTTTTTTGGTTTTGGTGCATTGGGATAGACAGTGAATAATGAAGATAAAATGGTATTGAGAGGACAAATTGGGTCAAGACCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGGACATTGTGAGGCCATCCAAGTTCCAGCAAATCCACAAAAATCAGCAACTAAAAACTCTTCAACAATGAACAACATAGCTTATGCTAGAGATGAAGCCTCCAATTACAAACCCATGAGCTGGAAATGCAAATGTGGAAGCTTAATCTTCAATCCTTAACTATTTTATATAACCCCCCCTCTCTTAATCTCTTCCTCTGTAAATTAGTGATTATATATGATTGTTAATTTCTGTAATTTAACCACTCTGATTTCTCTATCTCTCCCTCTTTTCAATTTGTAGTGCAATTTGATAAGCAGGGCATTAGATAAAGAAGAGTAGTATTATGATTGAATTCAACAAATTCCTTCCATATTATTGTTGGTGTTAACTTAGTAAATTGAATCAGAGAGAGAAAGAAAAGGGAAGTGGGTGGTGATTGGAATGGTGCATTGCACTGTTTTTGGTGTCCCAAGAAAGAAGAAAAGAAAAGAAAGAGAAGATTATGGTTTAGGAACACTGTTGAGACTGAGACTCAGACTTCACCTATTTGCCTAATTAATCCTAATTCCTAATAGACTCTACACACTGCACATCTTTCCCAACCAACTTTCTCTCAAACACATTTTTCCTAGGTGGATTCTCTATG

mRNA sequence

GGAGAATTTCACTGTCTCTTTCACACCCTGCCCTCTCTCTCTCTCTGTGTGTGAGAAGAAAAGGAAAAATGGTGTGTGAGTGTAGTAGCAACAATGGCGTCATTGGCTCGCGCAGCAGAATCTTGTGTTCGACTGTTTCTCTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTTATGGCTGAAGGTAACTGGTTAAACCGAAAATCGTTTTTCTTTGCAGGCAGATTGATTTCAGGGAGTGGCAAGACAGTGAATAATGAAGATAAAATGGTATTGAGAGGACAAATTGGGTCAAGACCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGGACATTGTGAGGCCATCCAAGTTCCAGCAAATCCACAAAAATCAGCAACTAAAAACTCTTCAACAATGAACAACATAGCTTATGCTAGAGATGAAGCCTCCAATTACAAACCCATGAGCTGGAAATGCAAATGTGGAAGCTTAATCTTCAATCCTTAACTATTTTATATAACCCCCCCTCTCTTAATCTCTTCCTCTGTAAATTAGTGATTATATATGATTGTTAATTTCTGTAATTTAACCACTCTGATTTCTCTATCTCTCCCTCTTTTCAATTTGTAGTGCAATTTGATAAGCAGGGCATTAGATAAAGAAGAGTAGTATTATGATTGAATTCAACAAATTCCTTCCATATTATTGTTGGTGTTAACTTAGTAAATTGAATCAGAGAGAGAAAGAAAAGGGAAGTGGGTGGTGATTGGAATGGTGCATTGCACTGTTTTTGGTGTCCCAAGAAAGAAGAAAAGAAAAGAAAGAGAAGATTATGGTTTAGGAACACTGTTGAGACTGAGACTCAGACTTCACCTATTTGCCTAATTAATCCTAATTCCTAATAGACTCTACACACTGCACATCTTTCCCAACCAACTTTCTCTCAAACACATTTTTCCTAGGTGGATTCTCTATG

Coding sequence (CDS)

ATGGTGTGTGAGTGTAGTAGCAACAATGGCGTCATTGGCTCGCGCAGCAGAATCTTGTGTTCGACTGTTTCTCTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTTATGGCTGAAGGTAACTGGTTAAACCGAAAATCGTTTTTCTTTGCAGGCAGATTGATTTCAGGGAGTGGCAAGACAGTGAATAATGAAGATAAAATGGTATTGAGAGGACAAATTGGGTCAAGACCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGGACATTGTGAGGCCATCCAAGTTCCAGCAAATCCACAAAAATCAGCAACTAAAAACTCTTCAACAATGAACAACATAGCTTATGCTAGAGATGAAGCCTCCAATTACAAACCCATGAGCTGGAAATGCAAATGTGGAAGCTTAATCTTCAATCCTTAA

Protein sequence

MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGSGKTVNNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWKCKCGSLIFNP

Homology

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BLAST of Lsi01G008560 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.4e-22
Identity = 61/127 (48.03%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 25  LLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGSGKTVNNEDKMVLRGQIGSRPPKCE 84
           LL  LIL ST    MA G      S  F         K+ + + KM++RG IGSRPP+CE
Sbjct: 11  LLILLILNSTHFSLMANGR-PEPDSVEFT--------KSGDQDVKMMMRGLIGSRPPRCE 70

Query: 85  R-RCSWCGHCEAIQVPANPQ-------KSATKNSSTMNNIAYAR-DEASNYKPMSWKCKC 143
           R RC  CGHCEAIQVP NPQ        +++ +SS   ++ Y R D+++NYKPMSWKCKC
Sbjct: 71  RVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKC 128

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BLAST of Lsi01G008560 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-09
Identity = 29/78 (37.18%), Postives = 40/78 (51.28%), Query Frame = 0


Query: 73  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTM--------NNIAYARDEAS 132
           + ++GS PP C  RC+ C  C AIQVP  P +S     +          +++    D+ S
Sbjct: 45  KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 104

Query: 133 NYKPMSWKCKCGSLIFNP 143
           NYKPM WKC C    +NP
Sbjct: 105 NYKPMGWKCHCNGHFYNP 122

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BLAST of Lsi01G008560 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 65  NNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEAS 124
           N E+ +  R +IGS+PP CE++C  C  CEAIQ P            T+++I +     +
Sbjct: 46  NKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFP------------TISSIPHLSPHYA 104

Query: 125 NYKPMSWKCKC 136
           NY+P  W+C C
Sbjct: 106 NYQPEGWRCHC 104

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BLAST of Lsi01G008560 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.4e-05
Identity = 35/133 (26.32%), Postives = 50/133 (37.59%), Query Frame = 0


Query: 10  GVIGSRSRILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGSGKTVNNEDK 69
           G    R R L + +     L L S      A+G W+ +++    G  + G     N    
Sbjct: 2   GTFRRRRRFLLAALVTFALLHLFSASSIVSADGRWIGQRT----GSDLPGGFIRSNKR-- 61

Query: 70  MVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPM 129
               G  GS PP C  +C  C  C+ + VP  P  S                    Y P 
Sbjct: 62  ---FGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSM----------------PLEYYPE 109

Query: 130 SWKCKCGSLIFNP 143
           +W+CKCG+ +F P
Sbjct: 122 AWRCKCGNKLFMP 109

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BLAST of Lsi01G008560 vs. ExPASy TrEMBL
Match: A0A0A0KGK0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G497000 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.7e-55
Identity = 119/144 (82.64%), Postives = 120/144 (83.33%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISG 60
           M CEC  NNGVIG RSR ILC  VSLLFFLILASTQMRFMAE            GR IS 
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILASTQMRFMAE------------GRFISR 60

Query: 61  SGKTVNN-EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAY 120
           +GKTVNN EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAY
Sbjct: 61  NGKTVNNSEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAY 120

Query: 121 ARDEASNYKPMSWKCKCGSLIFNP 143
           ARDEASNYKPMSWKCKCGSLIFNP
Sbjct: 121 ARDEASNYKPMSWKCKCGSLIFNP 131

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BLAST of Lsi01G008560 vs. ExPASy TrEMBL
Match: A0A5A7T4J5 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003700 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.8e-55
Identity = 118/144 (81.94%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISG 60
           M CEC  NNGVIG RSR ILC  VSLLFFLIL STQMRFMAE            GR IS 
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILVSTQMRFMAE------------GRFISR 60

Query: 61  SGKTVNN-EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAY 120
           +GKTVNN EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAY
Sbjct: 61  NGKTVNNSEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAY 120

Query: 121 ARDEASNYKPMSWKCKCGSLIFNP 143
           ARDEASNYKPMSWKCKCGSLIFNP
Sbjct: 121 ARDEASNYKPMSWKCKCGSLIFNP 131

[Close]

BLAST of Lsi01G008560 vs. ExPASy TrEMBL
Match: A0A1S3B1V9 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103484886 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.8e-55
Identity = 118/144 (81.94%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISG 60
           M CEC  NNGVIG RSR ILC  VSLLFFLIL STQMRFMAE            GR IS 
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILVSTQMRFMAE------------GRFISR 60

Query: 61  SGKTVNN-EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAY 120
           +GKTVNN EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAY
Sbjct: 61  NGKTVNNSEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAY 120

Query: 121 ARDEASNYKPMSWKCKCGSLIFNP 143
           ARDEASNYKPMSWKCKCGSLIFNP
Sbjct: 121 ARDEASNYKPMSWKCKCGSLIFNP 131

[Close]

BLAST of Lsi01G008560 vs. ExPASy TrEMBL
Match: A0A6J1BSQ3 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111005366 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.6e-50
Identity = 107/142 (75.35%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGS 60
           M CEC +NNGVIG RSRILC+TV  LF LILASTQMRFMAE            GRL+   
Sbjct: 1   MSCEC-NNNGVIG-RSRILCATVPFLFLLILASTQMRFMAE------------GRLVPKR 60

Query: 61  GKTVNNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYAR 120
           G+TV  E+K+VLRGQIGSRPPKCERRCSWCGHCEAIQVP NPQKSA  NSS  NN+AYAR
Sbjct: 61  GQTV-GEEKVVLRGQIGSRPPKCERRCSWCGHCEAIQVPTNPQKSANTNSSAFNNMAYAR 120

Query: 121 DEASNYKPMSWKCKCGSLIFNP 143
           DEASNYKPMSWKCKCGSLIFNP
Sbjct: 121 DEASNYKPMSWKCKCGSLIFNP 127

[Close]

BLAST of Lsi01G008560 vs. ExPASy TrEMBL
Match: A0A6J1HJ94 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111463445 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.2e-49
Identity = 111/142 (78.17%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGS 60
           M CEC +NNGVIG RSRILC+TVS LFFLILASTQMRFMAE            GR IS S
Sbjct: 55  MGCEC-NNNGVIG-RSRILCATVSFLFFLILASTQMRFMAE------------GRSISKS 114

Query: 61  GKTVNNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYAR 120
           GKTV +EDK+VLRGQIGSRPPKCERRCSWC HCEAIQVPANPQK     SS M NIAYAR
Sbjct: 115 GKTV-SEDKVVLRGQIGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSAMKNIAYAR 174

Query: 121 DEASNYKPMSWKCKCGSLIFNP 143
           DEASNYKPMSWKCKCGSLIFNP
Sbjct: 175 DEASNYKPMSWKCKCGSLIFNP 176

[Close]

BLAST of Lsi01G008560 vs. NCBI nr
Match: XP_038882800.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-58
Identity = 120/142 (84.51%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGS 60
           M CEC  NNGV+GSRSRILCSTVSLLFFLILASTQMRFMAE            GRLIS +
Sbjct: 1   MGCEC--NNGVMGSRSRILCSTVSLLFFLILASTQMRFMAE------------GRLISRN 60

Query: 61  GKTVNNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYAR 120
           GKTVN+EDK+VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSA KNSSTM NIAYAR
Sbjct: 61  GKTVNDEDKVVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSAIKNSSTMKNIAYAR 120

Query: 121 DEASNYKPMSWKCKCGSLIFNP 143
           DEASNYKPMSWKCKCGSLIFNP
Sbjct: 121 DEASNYKPMSWKCKCGSLIFNP 128

[Close]

BLAST of Lsi01G008560 vs. NCBI nr
Match: XP_038882801.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-55
Identity = 117/142 (82.39%), Postives = 121/142 (85.21%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGS 60
           M CEC  NNGV+GSRSRILCSTVSLLFFLILASTQMRFMAE            GRLIS  
Sbjct: 1   MGCEC--NNGVMGSRSRILCSTVSLLFFLILASTQMRFMAE------------GRLIS-- 60

Query: 61  GKTVNNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYAR 120
            + VN+EDK+VLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSA KNSSTM NIAYAR
Sbjct: 61  -RNVNDEDKVVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSAIKNSSTMKNIAYAR 120

Query: 121 DEASNYKPMSWKCKCGSLIFNP 143
           DEASNYKPMSWKCKCGSLIFNP
Sbjct: 121 DEASNYKPMSWKCKCGSLIFNP 125

[Close]

BLAST of Lsi01G008560 vs. NCBI nr
Match: XP_004143420.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 5.6e-55
Identity = 119/144 (82.64%), Postives = 120/144 (83.33%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISG 60
           M CEC  NNGVIG RSR ILC  VSLLFFLILASTQMRFMAE            GR IS 
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILASTQMRFMAE------------GRFISR 60

Query: 61  SGKTVNN-EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAY 120
           +GKTVNN EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAY
Sbjct: 61  NGKTVNNSEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAY 120

Query: 121 ARDEASNYKPMSWKCKCGSLIFNP 143
           ARDEASNYKPMSWKCKCGSLIFNP
Sbjct: 121 ARDEASNYKPMSWKCKCGSLIFNP 131

[Close]

BLAST of Lsi01G008560 vs. NCBI nr
Match: XP_008440444.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis melo] >KAA0036385.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis melo var. makuwa] >TYK12781.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 118/144 (81.94%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSR-ILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISG 60
           M CEC  NNGVIG RSR ILC  VSLLFFLIL STQMRFMAE            GR IS 
Sbjct: 1   MGCEC-INNGVIGRRSRIILCPIVSLLFFLILVSTQMRFMAE------------GRFISR 60

Query: 61  SGKTVNN-EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAY 120
           +GKTVNN EDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKS TKNSSTM NIAY
Sbjct: 61  NGKTVNNSEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAY 120

Query: 121 ARDEASNYKPMSWKCKCGSLIFNP 143
           ARDEASNYKPMSWKCKCGSLIFNP
Sbjct: 121 ARDEASNYKPMSWKCKCGSLIFNP 131

[Close]

BLAST of Lsi01G008560 vs. NCBI nr
Match: XP_022132530.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022132531.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia])

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-49
Identity = 107/142 (75.35%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 1   MVCECSSNNGVIGSRSRILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGS 60
           M CEC +NNGVIG RSRILC+TV  LF LILASTQMRFMAE            GRL+   
Sbjct: 1   MSCEC-NNNGVIG-RSRILCATVPFLFLLILASTQMRFMAE------------GRLVPKR 60

Query: 61  GKTVNNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYAR 120
           G+TV  E+K+VLRGQIGSRPPKCERRCSWCGHCEAIQVP NPQKSA  NSS  NN+AYAR
Sbjct: 61  GQTV-GEEKVVLRGQIGSRPPKCERRCSWCGHCEAIQVPTNPQKSANTNSSAFNNMAYAR 120

Query: 121 DEASNYKPMSWKCKCGSLIFNP 143
           DEASNYKPMSWKCKCGSLIFNP
Sbjct: 121 DEASNYKPMSWKCKCGSLIFNP 127

[Close]

BLAST of Lsi01G008560 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-23
Identity = 61/127 (48.03%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 25  LLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGSGKTVNNEDKMVLRGQIGSRPPKCE 84
           LL  LIL ST    MA G      S  F         K+ + + KM++RG IGSRPP+CE
Sbjct: 11  LLILLILNSTHFSLMANGR-PEPDSVEFT--------KSGDQDVKMMMRGLIGSRPPRCE 70

Query: 85  R-RCSWCGHCEAIQVPANPQ-------KSATKNSSTMNNIAYAR-DEASNYKPMSWKCKC 143
           R RC  CGHCEAIQVP NPQ        +++ +SS   ++ Y R D+++NYKPMSWKCKC
Sbjct: 71  RVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKC 128

[Close]

BLAST of Lsi01G008560 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-10
Identity = 29/78 (37.18%), Postives = 40/78 (51.28%), Query Frame = 0


Query: 73  RGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTM--------NNIAYARDEAS 132
           + ++GS PP C  RC+ C  C AIQVP  P +S     +          +++    D+ S
Sbjct: 45  KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 104

Query: 133 NYKPMSWKCKCGSLIFNP 143
           NYKPM WKC C    +NP
Sbjct: 105 NYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Lsi01G008560 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 65  NNEDKMVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEAS 124
           N E+ +  R +IGS+PP CE++C  C  CEAIQ P            T+++I +     +
Sbjct: 46  NKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFP------------TISSIPHLSPHYA 104

Query: 125 NYKPMSWKCKC 136
           NY+P  W+C C
Sbjct: 106 NYQPEGWRCHC 104

[Close]

BLAST of Lsi01G008560 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 6.7e-06
Identity = 35/133 (26.32%), Postives = 50/133 (37.59%), Query Frame = 0


Query: 10  GVIGSRSRILCSTVSLLFFLILASTQMRFMAEGNWLNRKSFFFAGRLISGSGKTVNNEDK 69
           G    R R L + +     L L S      A+G W+ +++    G  + G     N    
Sbjct: 2   GTFRRRRRFLLAALVTFALLHLFSASSIVSADGRWIGQRT----GSDLPGGFIRSNKR-- 61

Query: 70  MVLRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPM 129
               G  GS PP C  +C  C  C+ + VP  P  S                    Y P 
Sbjct: 62  ---FGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSM----------------PLEYYPE 109

Query: 130 SWKCKCGSLIFNP 143
           +W+CKCG+ +F P
Sbjct: 122 AWRCKCGNKLFMP 109

[Close]

BLAST of Lsi01G008560 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 44.3 bits (103), Expect = 9.6e-05
Identity = 22/69 (31.88%), Postives = 29/69 (42.03%), Query Frame = 0


Query: 74  GQIGSRPPKCERRCSWCGHCEAIQVPANPQKSATKNSSTMNNIAYARDEASNYKPMSWKC 133
           G  GS PP C  +C  C  C+A+ VP  P                       Y P +W+C
Sbjct: 55  GGPGSVPPMCRLKCGKCEPCKAVHVPIQP----------------GLIMPLEYYPEAWRC 107

Query: 134 KCGSLIFNP 143
           KCG+ +F P
Sbjct: 115 KCGNKLFMP 107

The following BLAST results are available for this feature:

BLAST of Lsi01G008560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T068	8.4e-22	48.03	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LFT5	2.8e-09	37.18	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
C4B8C4	1.5e-07	36.62	EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q2V3I3	9.4e-05	26.32	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Lsi01G008560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGK0	2.7e-55	82.64	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G497...	[more]
A0A5A7T4J5	7.8e-55	81.94	Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B1V9	7.8e-55	81.94	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103484886...	[more]
A0A6J1BSQ3	7.6e-50	75.35	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1HJ94	2.2e-49	78.17	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Lsi01G008560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882800.1	1.4e-58	84.51	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Benincasa hispida]	[more]
XP_038882801.1	1.5e-55	82.39	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Benincasa hispida]	[more]
XP_004143420.1	5.6e-55	82.64	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis sativus]	[more]
XP_008440444.1	1.6e-54	81.94	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucumis melo] >KAA0036385...	[more]
XP_022132530.1	1.6e-49	75.35	EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022132531.1...	[more]

BLAST of Lsi01G008560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37810.1	6.0e-23	48.03	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G10310.1	2.0e-10	37.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13898.1	1.1e-08	36.62	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT4G14723.1	6.7e-06	26.32	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]
AT3G22820.1	9.6e-05	31.88	allergen-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 75..142 e-value: 6.6E-17 score: 61.2
None	No IPR available	PANTHER	PTHR33109:SF71	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2	coord: 8..142
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 8..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G008560.1	Lsi01G008560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane