Lsi01G008260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G008260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr01: 6554194 .. 6554499 (-)
RNA-Seq Expression	Lsi01G008260
Synteny	Lsi01G008260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGATCTCGGCTGCCGTCGACTGCCCTACCTCTCCGGCTGCGTTCCCGCTTCTCCAGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGAGGTGGCAAAAGAAGCGGCTGGAGATGGCGATATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGTATATATGGATCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCGCAGAATTTTGACGAGGGGAGCCGTTACTATGAGAACAGTCGAGAAAATGAGATTGGGATTTCGAGATGA

mRNA sequence

ATGGAGAGAGATCTCGGCTGCCGTCGACTGCCCTACCTCTCCGGCTGCGTTCCCGCTTCTCCAGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGAGGTGGCAAAAGAAGCGGCTGGAGATGGCGATATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGTATATATGGATCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCGCAGAATTTTGACGAGGGGAGCCGTTACTATGAGAACAGTCGAGAAAATGAGATTGGGATTTCGAGATGA

Coding sequence (CDS)

ATGGAGAGAGATCTCGGCTGCCGTCGACTGCCCTACCTCTCCGGCTGCGTTCCCGCTTCTCCAGCATGCTTTCCGATCCACGAAGGTGTGGAGTACTCGCGCATCCACGGCGGCGGCGGAGGTGGCAAAAGAAGCGGCTGGAGATGGCGATATCTTCTGAGGAGGTGGGTGAAGGATAGCATGAGTATATATGGATCGAAATCTCTGTCTTTCCAATACGACGCCGTTAGCTATTCGCAGAATTTTGACGAGGGGAGCCGTTACTATGAGAACAGTCGAGAAAATGAGATTGGGATTTCGAGATGA

Protein sequence

MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENEIGISR

Homology

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BLAST of Lsi01G008260 vs. ExPASy TrEMBL
Match: A0A0A0KJW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497320 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDS 60
           M+RDLGCRRLPYLSGCVP+SPACFPIHEGVEY+RIH GG G KRSGWRWRYLLR+WVKD 
Sbjct: 1   MDRDLGCRRLPYLSGCVPSSPACFPIHEGVEYTRIH-GGAGAKRSGWRWRYLLRKWVKDG 60

Query: 61  MSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGISR 102
           M+IYGSKSLSFQYDAVSYSQNFDEGSR YE+  RENEIGISR
Sbjct: 61  MNIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of Lsi01G008260 vs. ExPASy TrEMBL
Match: A0A5D3BBB9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3040G00010 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.7e-41
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MERDLGCRRLPYLSGCVPASP-ACFPIHEG-VEYSRIHGGGGGGKRSGWRWRYLLRRWVK 60
           MERDLGC RLPYLSGCVPASP ACFP+HEG V Y+RIH GG GGKRS WRWRYLLR+WVK
Sbjct: 1   MERDLGCSRLPYLSGCVPASPAACFPVHEGSVGYTRIH-GGAGGKRSAWRWRYLLRKWVK 60

Query: 61  DSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGISR 102
           DSMSIYGSKSLSFQYDAVSYSQNFDEGSR YE+ +RENEIGISR
Sbjct: 61  DSMSIYGSKSLSFQYDAVSYSQNFDEGSRCYESYNRENEIGISR 103

[Close]

BLAST of Lsi01G008260 vs. ExPASy TrEMBL
Match: A0A6P5YN44 (uncharacterized protein LOC111293198 OS=Durio zibethinus OX=66656 GN=LOC111293198 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.9e-21
Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDS 60
          MERDLG RR  Y SGC   SP+CFP+HE +EYSRIH      KR   RWR LLRR ++D 
Sbjct: 4  MERDLGRRRSSYFSGCYMMSPSCFPVHEEMEYSRIHYCSSSDKRRR-RWRNLLRRLLRDG 63

Query: 61 M-SIYGSKSLSFQYDAVSYSQNFDEGSRYYEN 92
            SIYGSK LSF YDAVSYSQNFDEG  + E+
Sbjct: 64 KNSIYGSKPLSFHYDAVSYSQNFDEGCHHEES 94

[Close]

BLAST of Lsi01G008260 vs. ExPASy TrEMBL
Match: A0A2C9UX38 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G121900 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.9e-20
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MERDLGC----RRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRW 60
          MERDL      RR   LSGC+  SP+CFP+HE +EYSRIH       + G RWR L+RR 
Sbjct: 1  MERDLSLPLPHRRSSCLSGCM-MSPSCFPVHEEMEYSRIHYSSSSSSKRGRRWRNLIRRL 60

Query: 61 VKD-SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN 92
          V+D   S+YGSK LSF YDAVSYSQNFDEGS Y E+
Sbjct: 61 VRDGKSSLYGSKPLSFNYDAVSYSQNFDEGSHYQES 95

[Close]

BLAST of Lsi01G008260 vs. ExPASy TrEMBL
Match: A0A061DHC4 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000929 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 1   MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKD- 60
           MERDL  RR  Y SGC+  SP+CFP+HE +EYSRIH       ++  RWR LLRR V+D 
Sbjct: 4   MERDLSHRRSFYFSGCM-MSPSCFPVHEEMEYSRIHYRSSSSDKTRRRWRNLLRRLVRDG 63

Query: 61  SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENEI 98
             SIYGSK LSF YDAVSYSQNFD+G  + E+     +
Sbjct: 64  KSSIYGSKPLSFHYDAVSYSQNFDDGCHHDESGHGRRV 100

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: KGN48682.1 (hypothetical protein Csa_003439 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDS 60
           M+RDLGCRRLPYLSGCVP+SPACFPIHEGVEY+RIH GG G KRSGWRWRYLLR+WVKD 
Sbjct: 1   MDRDLGCRRLPYLSGCVPSSPACFPIHEGVEYTRIH-GGAGAKRSGWRWRYLLRKWVKDG 60

Query: 61  MSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGISR 102
           M+IYGSKSLSFQYDAVSYSQNFDEGSR YE+  RENEIGISR
Sbjct: 61  MNIYGSKSLSFQYDAVSYSQNFDEGSRCYESCHRENEIGISR 101

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: KAA0057639.1 (hypothetical protein E6C27_scaffold25649G00010 [Cucumis melo var. makuwa] >TYJ97130.1 hypothetical protein E5676_scaffold3040G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 5.5e-41
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MERDLGCRRLPYLSGCVPASP-ACFPIHEG-VEYSRIHGGGGGGKRSGWRWRYLLRRWVK 60
           MERDLGC RLPYLSGCVPASP ACFP+HEG V Y+RIH GG GGKRS WRWRYLLR+WVK
Sbjct: 1   MERDLGCSRLPYLSGCVPASPAACFPVHEGSVGYTRIH-GGAGGKRSAWRWRYLLRKWVK 60

Query: 61  DSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN-SRENEIGISR 102
           DSMSIYGSKSLSFQYDAVSYSQNFDEGSR YE+ +RENEIGISR
Sbjct: 61  DSMSIYGSKSLSFQYDAVSYSQNFDEGSRCYESYNRENEIGISR 103

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: KAG6594915.1 (hypothetical protein SDJN03_11468, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 80/105 (76.19%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIH----GGGGGGKRSGWRWRYLLRRW 60
           ME DL  RRLPYLS CV AS  CFPIHEGVEYSRI+    GGGGGGKR GWRWRYLLRRW
Sbjct: 1   METDLARRRLPYLSACVAASSPCFPIHEGVEYSRINGGGGGGGGGGKRIGWRWRYLLRRW 60

Query: 61  VKDSMSIYGSKSLSFQYDAVSYSQNFDEGSRYYENSRENEIGISR 102
           +KD M++YG+KSLSFQYDAVSYSQNFD+G  +YE +RENEI ISR
Sbjct: 61  MKDRMNMYGTKSLSFQYDAVSYSQNFDDGC-HYERNRENEIRISR 104

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: XP_022741710.1 (uncharacterized protein LOC111293198 [Durio zibethinus])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MERDLGCRRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRWVKDS 60
          MERDLG RR  Y SGC   SP+CFP+HE +EYSRIH      KR   RWR LLRR ++D 
Sbjct: 4  MERDLGRRRSSYFSGCYMMSPSCFPVHEEMEYSRIHYCSSSDKRRR-RWRNLLRRLLRDG 63

Query: 61 M-SIYGSKSLSFQYDAVSYSQNFDEGSRYYEN 92
            SIYGSK LSF YDAVSYSQNFDEG  + E+
Sbjct: 64 KNSIYGSKPLSFHYDAVSYSQNFDEGCHHEES 94

[Close]

BLAST of Lsi01G008260 vs. NCBI nr
Match: OAY35690.1 (hypothetical protein MANES_12G121900v8 [Manihot esculenta])

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-19
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MERDLGC----RRLPYLSGCVPASPACFPIHEGVEYSRIHGGGGGGKRSGWRWRYLLRRW 60
          MERDL      RR   LSGC+  SP+CFP+HE +EYSRIH       + G RWR L+RR 
Sbjct: 1  MERDLSLPLPHRRSSCLSGCM-MSPSCFPVHEEMEYSRIHYSSSSSSKRGRRWRNLIRRL 60

Query: 61 VKD-SMSIYGSKSLSFQYDAVSYSQNFDEGSRYYEN 92
          V+D   S+YGSK LSF YDAVSYSQNFDEGS Y E+
Sbjct: 61 VRDGKSSLYGSKPLSFNYDAVSYSQNFDEGSHYQES 95

The following BLAST results are available for this feature:

BLAST of Lsi01G008260 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G008260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJW1	5.8e-44	87.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497320 PE=4 SV=1	[more]
A0A5D3BBB9	2.7e-41	86.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6P5YN44	6.9e-21	63.04	uncharacterized protein LOC111293198 OS=Durio zibethinus OX=66656 GN=LOC11129319...	[more]
A0A2C9UX38	9.9e-20	59.38	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G121900 PE=4 SV=...	[more]
A0A061DHC4	3.8e-19	56.12	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000929 PE=4 SV=1	[more]

BLAST of Lsi01G008260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48682.1	1.2e-43	87.25	hypothetical protein Csa_003439 [Cucumis sativus]	[more]
KAA0057639.1	5.5e-41	86.54	hypothetical protein E6C27_scaffold25649G00010 [Cucumis melo var. makuwa] >TYJ97...	[more]
KAG6594915.1	3.2e-36	76.19	hypothetical protein SDJN03_11468, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022741710.1	1.4e-20	63.04	uncharacterized protein LOC111293198 [Durio zibethinus]	[more]
OAY35690.1	2.1e-19	59.38	hypothetical protein MANES_12G121900v8 [Manihot esculenta]	[more]

BLAST of Lsi01G008260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168:SF6	OS05G0516100 PROTEIN	coord: 9..91
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 9..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G008260.1	Lsi01G008260.1	mRNA