Lsi01G007980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G007980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionmerozoite surface antigen 2-like
Locationchr01: 6277315 .. 6277852 (+)
RNA-Seq ExpressionLsi01G007980
SyntenyLsi01G007980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCAGTATGGGTAAGGGATTAAAAAAGCAAAAGAATTCTACCAGTCATCACTCCAGTCCACCTTCAAATCTAGATCTCTTAATTGACCCAAGGATCAACGTCTACGCTAAAATCACTGCGAACAGAGTTCCAGCAACAGCGATCCCGAATGTCGCCGCTCCGCCGATGTGCGATGCCGCTCCAGCTGGGTTGTCGGCCGCTGGTGCTTGAGGTGCAGGTGAAGGCACCTCGTTTCCGGTGGGTGAAGGAGGAGAAGCAATGGGTGGAACTACAGGACCACCAGCGGGAGATCCCGAAGGAGTAGGACTGGAGCTTGGAGCTGGGGTAGGAGCAGTAGTCGCCGGAGCTGGAGCAGGTACCACTGGTGCCGGTGATGGAGCTTCCGGAGCGGGTGAGGGCGACGCCGGAGCCGGTGAAGGCGATGGTGCTCTGTTTGGCGTCGGAGTCGGAGATGGAGGGAAAACGACCGGAGAAGGCGCTGGCGTGGCTGGTGGCGGAGTTAGAGGCTGTGAAGAACCCGGCGCCGGCGCTGGCGCC

mRNA sequence

AGGCAGTATGGGTAAGGGATTAAAAAAGCAAAAGAATTCTACCAGTCATCACTCCAGTCCACCTTCAAATCTAGATCTCTTAATTGACCCAAGGATCAACGTCTACGCTAAAATCACTGCGAACAGAGTTCCAGCAACAGCGATCCCGAATGTCGCCGCTCCGCCGATGTGCGATGCCGCTCCAGCTGGGTTGTCGGCCGCTGGTGAAGGCACCTCGTTTCCGGTGGGTGAAGGAGGAGAAGCAATGGGTGGAACTACAGGACCACCAGCGGGAGATCCCGAAGGAGTAGGACTGGAGCTTGGAGCTGGGGTAGGAGCAGTAGTCGCCGGAGCTGGAGCAGGTACCACTGGTGCCGGTGATGGAGCTTCCGGAGCGGGTGAGGGCGACGCCGGAGCCGGTGAAGGCGATGGTGCTCTGTTTGGCGTCGGAGTCGGAGATGGAGGGAAAACGACCGGAGAAGGCGCTGGCGTGGCTGGTGGCGGAGTTAGAGGCTGTGAAGAACCCGGCGCCGGCGCTGGCGCC

Coding sequence (CDS)

ATGGGTAAGGGATTAAAAAAGCAAAAGAATTCTACCAGTCATCACTCCAGTCCACCTTCAAATCTAGATCTCTTAATTGACCCAAGGATCAACGTCTACGCTAAAATCACTGCGAACAGAGTTCCAGCAACAGCGATCCCGAATGTCGCCGCTCCGCCGATGTGCGATGCCGCTCCAGCTGGGTTGTCGGCCGCTGGTGAAGGCACCTCGTTTCCGGTGGGTGAAGGAGGAGAAGCAATGGGTGGAACTACAGGACCACCAGCGGGAGATCCCGAAGGAGTAGGACTGGAGCTTGGAGCTGGGGTAGGAGCAGTAGTCGCCGGAGCTGGAGCAGGTACCACTGGTGCCGGTGATGGAGCTTCCGGAGCGGGTGAGGGCGACGCCGGAGCCGGTGAAGGCGATGGTGCTCTGTTTGGCGTCGGAGTCGGAGATGGAGGGAAAACGACCGGAGAAGGCGCTGGCGTGGCTGGTGGCGGAGTTAGAGGCTGTGAAGAACCCGGCGCCGGCGCTGGCGCC

Protein sequence

MGKGLKKQKNSTSHHSSPPSNLDLLIDPRINVYAKITANRVPATAIPNVAAPPMCDAAPAGLSAAGEGTSFPVGEGGEAMGGTTGPPAGDPEGVGLELGAGVGAVVAGAGAGTTGAGDGASGAGEGDAGAGEGDGALFGVGVGDGGKTTGEGAGVAGGGVRGCEEPGAGAGA
Homology
BLAST of Lsi01G007980 vs. ExPASy TrEMBL
Match: A0A6J1BUI4 (merozoite surface antigen 2-like OS=Momordica charantia OX=3673 GN=LOC111005482 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.0e-25
Identity = 93/147 (63.27%), Postives = 99/147 (67.35%), Query Frame = 0

Query: 30  INVYAKITANRVPATAIPNVAAPPMCDAAPAGLSAA-------GEGTSFPVGEGGEAMGG 89
           + +YA  TANRVPA AIPNVAA P+CDAAPAGLSA        G GT FP GEGGE   G
Sbjct: 3   VEIYANTTANRVPARAIPNVAARPICDAAPAGLSAGGGWGAGEGTGTPFPAGEGGEGKAG 62

Query: 90  TTGPPAGDPEGVGLELGAGVGAVVAGAGAGTTGAGDGASGAGEGDAGAGEGDGALFGVGV 149
            TG PAGDP G G  +G GVG V  GAG G  G G+GASGAGEGDAG G GDGALFG GV
Sbjct: 63  -TGAPAGDPLGEG--IGVGVG-VEVGAGEGAAGVGEGASGAGEGDAGVGAGDGALFGDGV 122

Query: 150 GDGGKTTGEGAGVAGGGVRGCEEPGAG 170
           G GGK TGEGAG       GC+  G G
Sbjct: 123 GAGGKKTGEGAG-------GCDGAGPG 138

BLAST of Lsi01G007980 vs. NCBI nr
Match: XP_011658485.2 (jacalin-related lectin 34-like [Cucumis sativus] >KAE8647550.1 hypothetical protein Csa_004127 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-29
Identity = 96/125 (76.80%), Postives = 99/125 (79.20%), Query Frame = 0

Query: 54  MCDAAPAGLSA-----AGEGTSFPVGEGGEAMGGTTGPPAGDPEGVGLELGAGVGAVV-A 113
           MCD APAGLSA     AGEGTS PVGEGGEAMGG TGP    PEGVG+E+G GVG  +  
Sbjct: 1   MCDPAPAGLSAAGPWGAGEGTSIPVGEGGEAMGGRTGP----PEGVGVEIGVGVGVEIGV 60

Query: 114 GAGAGTTGAGDGASGAGEGDAGAGEGDGALFGVGVGDGGKTTGEGAGVAGGGVRGCEEPG 173
           G GA   GAGD ASGAGEGD G GEGDGALFGVGVGDGGKTTGEGAGVA GGVRGC EPG
Sbjct: 61  GVGAIGAGAGDAASGAGEGDTGVGEGDGALFGVGVGDGGKTTGEGAGVADGGVRGCGEPG 120

BLAST of Lsi01G007980 vs. NCBI nr
Match: XP_022132682.1 (merozoite surface antigen 2-like [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-24
Identity = 93/147 (63.27%), Postives = 99/147 (67.35%), Query Frame = 0

Query: 30  INVYAKITANRVPATAIPNVAAPPMCDAAPAGLSAA-------GEGTSFPVGEGGEAMGG 89
           + +YA  TANRVPA AIPNVAA P+CDAAPAGLSA        G GT FP GEGGE   G
Sbjct: 3   VEIYANTTANRVPARAIPNVAARPICDAAPAGLSAGGGWGAGEGTGTPFPAGEGGEGKAG 62

Query: 90  TTGPPAGDPEGVGLELGAGVGAVVAGAGAGTTGAGDGASGAGEGDAGAGEGDGALFGVGV 149
            TG PAGDP G G  +G GVG V  GAG G  G G+GASGAGEGDAG G GDGALFG GV
Sbjct: 63  -TGAPAGDPLGEG--IGVGVG-VEVGAGEGAAGVGEGASGAGEGDAGVGAGDGALFGDGV 122

Query: 150 GDGGKTTGEGAGVAGGGVRGCEEPGAG 170
           G GGK TGEGAG       GC+  G G
Sbjct: 123 GAGGKKTGEGAG-------GCDGAGPG 138

BLAST of Lsi01G007980 vs. NCBI nr
Match: KAG7034220.1 (hypothetical protein SDJN02_03947, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-20
Identity = 89/132 (67.42%), Postives = 94/132 (71.21%), Query Frame = 0

Query: 54  MCDAAPAGLSAA-----GEGTSFPVGEGGEAMGGTTGPPAGDPEGVGLELGAGVGAVVA- 113
           MCDAAPAGLSAA     GEG S  +GEGGEA+GGTTG PAGDPEG+G ELGAGVGA+VA 
Sbjct: 1   MCDAAPAGLSAAGASGIGEGPSV-LGEGGEAIGGTTGAPAGDPEGIGRELGAGVGALVAG 60

Query: 114 --------GAGAGTTGAGDGASGAGEGDAGAGEGDGALFGVGVGDGGKTTGEGAGVAGGG 172
                   GAGA   GAGDGAS AGEGDA  G+GDGAL G   GDGG  TGEGAGVAG G
Sbjct: 61  DGVGALVSGAGACADGAGDGASVAGEGDAEIGDGDGALIGDRDGDGGNATGEGAGVAGVG 120

BLAST of Lsi01G007980 vs. NCBI nr
Match: KAG7026860.1 (hypothetical protein SDJN02_10867, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-13
Identity = 72/132 (54.55%), Postives = 77/132 (58.33%), Query Frame = 0

Query: 41  VPATAIPNVAAPPMCDAAPAGLSAAGEGTSFPVGEGGEAMGGTTGPPAGDPEGVGLELGA 100
           +PATAIPNV APP+CDAAP GLSA G   +    EGGEA  GTTGPPAGDPEGV   +GA
Sbjct: 39  LPATAIPNVPAPPICDAAPVGLSAGGPSGA---DEGGEATRGTTGPPAGDPEGV---IGA 98

Query: 101 GVGAVVAGAGAGTTGAGDGASGAGEGDAGAGEGDGALFGVGVGDGGKTTGEGAGVAGGGV 160
           GVGA+V              SGAG GDAG                     EGAGVAG G 
Sbjct: 99  GVGALV--------------SGAGVGDAG-------------------VREGAGVAGAGG 131

Query: 161 RGCEEPGAGAGA 173
           RGCE P AGAGA
Sbjct: 159 RGCEGPRAGAGA 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BUI46.0e-2563.27merozoite surface antigen 2-like OS=Momordica charantia OX=3673 GN=LOC111005482 ... [more]
Match NameE-valueIdentityDescription
XP_011658485.21.7e-2976.80jacalin-related lectin 34-like [Cucumis sativus] >KAE8647550.1 hypothetical prot... [more]
XP_022132682.11.2e-2463.27merozoite surface antigen 2-like [Momordica charantia][more]
KAG7034220.12.4e-2067.42hypothetical protein SDJN02_03947, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7026860.13.7e-1354.55hypothetical protein SDJN02_10867, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G007980.1Lsi01G007980.1mRNA