Lsi01G007960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G007960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Locationchr01: 6261376 .. 6261975 (+)
RNA-Seq ExpressionLsi01G007960
SyntenyLsi01G007960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTCCGTTTTAATGATCTCCACTTTCACTCTCTTTCTTTACTAATAATTCTTTTTTACACATACTTCAGCCTCACCGTCCAAGCCCAGCCCGCCTCCGACCTTAACTATTTGAAATTAAGCCGCCCCTTAACGGCGGCCATTCTCCTTCTTCTCTTTATTTTCTTCATCATCCTGTTTTTCTCCATTTACATTCGCCACTTCTTGGAGTTGAACGCCGCCTCGGACGCTGTCCTACGAGCTGCCGGTAGAGTGAACCGGTTCGGGACGTGTCACGGTTTGGACCCGGCCGAGATTCGGGCGTTTCCTGTGGTGGCCCACTCCGCTATAAAGGAAATGAAAATGGGGAAGTGGTCGTTGGAATGCGCGGTTTGCTTGACCGAATTCCAAGACTACGAAACGCTGCGTTTGTTGCCTAAATGTGGTCACGTTTTTCATCCCGCTTGCATCGACGCTTGGTTGGCCTCTTGCGCCACCTGCCCCATTTGCAGGGCCGACCTCGCCGCCGGAGAAGATTTCTCATCGGAATTCGTTGCGATCGGTGTTGTTGATCGGAATGGAGACGACGGCCTCAATGGGGAAGTGGTCGATAATTGA

mRNA sequence

ATGAAGCTCCGTTTTAATGATCTCCACTTTCACTCTCTTTCTTTACTAATAATTCTTTTTTACACATACTTCAGCCTCACCGTCCAAGCCCAGCCCGCCTCCGACCTTAACTATTTGAAATTAAGCCGCCCCTTAACGGCGGCCATTCTCCTTCTTCTCTTTATTTTCTTCATCATCCTGTTTTTCTCCATTTACATTCGCCACTTCTTGGAGTTGAACGCCGCCTCGGACGCTGTCCTACGAGCTGCCGGTAGAGTGAACCGGTTCGGGACGTGTCACGGTTTGGACCCGGCCGAGATTCGGGCGTTTCCTGTGGTGGCCCACTCCGCTATAAAGGAAATGAAAATGGGGAAGTGGTCGTTGGAATGCGCGGTTTGCTTGACCGAATTCCAAGACTACGAAACGCTGCGTTTGTTGCCTAAATGTGGTCACGTTTTTCATCCCGCTTGCATCGACGCTTGGTTGGCCTCTTGCGCCACCTGCCCCATTTGCAGGGCCGACCTCGCCGCCGGAGAAGATTTCTCATCGGAATTCGTTGCGATCGGTGTTGTTGATCGGAATGGAGACGACGGCCTCAATGGGGAAGTGGTCGATAATTGA

Coding sequence (CDS)

ATGAAGCTCCGTTTTAATGATCTCCACTTTCACTCTCTTTCTTTACTAATAATTCTTTTTTACACATACTTCAGCCTCACCGTCCAAGCCCAGCCCGCCTCCGACCTTAACTATTTGAAATTAAGCCGCCCCTTAACGGCGGCCATTCTCCTTCTTCTCTTTATTTTCTTCATCATCCTGTTTTTCTCCATTTACATTCGCCACTTCTTGGAGTTGAACGCCGCCTCGGACGCTGTCCTACGAGCTGCCGGTAGAGTGAACCGGTTCGGGACGTGTCACGGTTTGGACCCGGCCGAGATTCGGGCGTTTCCTGTGGTGGCCCACTCCGCTATAAAGGAAATGAAAATGGGGAAGTGGTCGTTGGAATGCGCGGTTTGCTTGACCGAATTCCAAGACTACGAAACGCTGCGTTTGTTGCCTAAATGTGGTCACGTTTTTCATCCCGCTTGCATCGACGCTTGGTTGGCCTCTTGCGCCACCTGCCCCATTTGCAGGGCCGACCTCGCCGCCGGAGAAGATTTCTCATCGGAATTCGTTGCGATCGGTGTTGTTGATCGGAATGGAGACGACGGCCTCAATGGGGAAGTGGTCGATAATTGA

Protein sequence

MKLRFNDLHFHSLSLLIILFYTYFSLTVQAQPASDLNYLKLSRPLTAAILLLLFIFFIILFFSIYIRHFLELNAASDAVLRAAGRVNRFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADLAAGEDFSSEFVAIGVVDRNGDDGLNGEVVDN
Homology
BLAST of Lsi01G007960 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-28
Identity = 68/148 (45.95%), Postives = 88/148 (59.46%), Query Frame = 0

Query: 29  QAQPA---SDLNYLKLSRPLTAAILLLLFIFFIILFFSIYIRHFLELNAASDAVLRAAG- 88
           Q+QP       NY +LS  +   +++L+   F + FFSIY RH    +   DA +  AG 
Sbjct: 30  QSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRH---CSGVPDAGVSPAGG 89

Query: 89  ---RVNRFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSLECAVCLTEFQDYETLRLLPK 148
              R        GLD + +  FP   +S +K  K+GK  LECA+CL EF+D ETLRLLPK
Sbjct: 90  ARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPK 149

Query: 149 CGHVFHPACIDAWLASCATCPICRADLA 170
           C HVFHP CIDAWL +  TCP+CRA+LA
Sbjct: 150 CDHVFHPHCIDAWLEAHVTCPVCRANLA 174

BLAST of Lsi01G007960 vs. ExPASy Swiss-Prot
Match: Q84W40 (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-25
Identity = 73/157 (46.50%), Postives = 90/157 (57.32%), Query Frame = 0

Query: 46  TAAILL--LLFIFFIILFFSIYIRHFLELNAASDAVLRAAGRVNRFGT--------CHGL 105
           T AIL+  L+ +FF + FFS+YIR  LE     D      G  N  G           GL
Sbjct: 62  TMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMD-----YGNPNDAGNWLATNRQQARGL 121

Query: 106 DPAEIRAFPVVAHSAIKEMKMGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWL 165
           D + I  FP   +S +K +++GK +LEC+VCL EF+D ETLRL+PKC HVFHP CIDAWL
Sbjct: 122 DASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL 181

Query: 166 ASCATCPICRADL--AAGEDFSSEFVAIGVVDRNGDD 191
            S  TCP+CRADL    GE   S  +   V D  G D
Sbjct: 182 RSHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGSD 213

BLAST of Lsi01G007960 vs. ExPASy Swiss-Prot
Match: Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-25
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 0

Query: 41  LSRPLTAAILLLLFIFFIILFFSIYIRHFLELNAASDAVLRAAG---RVNRFGTCHGLDP 100
           LS  +   +++++   F + FF++YIRH     A   +V  A G   RV       GLD 
Sbjct: 41  LSPAMAVVVVVVIAALFFMGFFTVYIRHC--TGAVDGSVTPAGGARRRVTNATVARGLDA 100

Query: 101 AEIRAFPVVAHSAIKEMKMGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLAS 160
             I  FP   +S +K  K+GK +LECA+CL EF+D ETLRLLPKC HVFHP CI AWL  
Sbjct: 101 ETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQG 160

Query: 161 CATCPICRADLA 170
             TCP+CR +LA
Sbjct: 161 HVTCPVCRTNLA 170

BLAST of Lsi01G007960 vs. ExPASy Swiss-Prot
Match: Q9SK92 (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 78/194 (40.21%), Postives = 108/194 (55.67%), Query Frame = 0

Query: 10  FHSLSLLIILFYTYFSLTVQAQPASDLNYLKLSRPLTAAILLLLF-IFFIILFFSIYIRH 69
           F+S  LL++L      + V +    D      S P TA I+++L  +FF +   S+Y+R 
Sbjct: 9   FYSSFLLLLL-----EVVVASSEFDDEGRTSFS-PTTAIIMIVLVSVFFALGCISVYMRR 68

Query: 70  FLELNAASDAVLRAAGRVN-RFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSLECAVCL 129
            L+     D+       +N R  T  GLD + I  FP   +S +K +++GK +LEC VCL
Sbjct: 69  CLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCL 128

Query: 130 TEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADL--AAGEDFSSEFVAIGVVD 189
            EF+D ETLRL+P+C HVFHP CIDAWL S  TCP+CRA+L    GE  SSE    G+  
Sbjct: 129 NEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIP--GLAR 188

Query: 190 RNGDDGLNGEVVDN 200
             G + L   + DN
Sbjct: 189 ETGQNSLRTPIDDN 194

BLAST of Lsi01G007960 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 60/128 (46.88%), Postives = 80/128 (62.50%), Query Frame = 0

Query: 46  TAAILLLLFIFFIILFFSIYIRHFLELNAASDAVL---RAAGRVNRFGTCHGLDPAEIRA 105
           T    +L+ +FF+    S+YIRH    N  S       RA    +R G   GLD A + +
Sbjct: 47  TTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRG---GLDNAVVES 106

Query: 106 FPVVAHSAIKEMKMGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCP 165
           FPV A+S++KE K+G   LECA+CL E +D+ET+RLLP C H+FH  CID WL S ATCP
Sbjct: 107 FPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCP 166

Query: 166 ICRADLAA 171
           +CR++L A
Sbjct: 167 VCRSNLTA 171

BLAST of Lsi01G007960 vs. ExPASy TrEMBL
Match: A0A0A0KIT7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499190 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.8e-71
Identity = 151/204 (74.02%), Postives = 167/204 (81.86%), Query Frame = 0

Query: 1   MKLRFN-DLHFHSLSLL-IILFYTYFSLTVQAQPA---SDLNYLKLSRPLTAAILLLLFI 60
           MKL F+   + HSLSLL IIL + +F++  Q  P+   S L+YLKLSRPLT  +LLLLFI
Sbjct: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFI 60

Query: 61  FFIILFFSIYIRHFLELNAASDAVLRAAGRVNRFGTCHGLDPAEIRAFPVVAHSAIKEMK 120
           FFI+LFFS+YIRHFLELNAASDAVLR+  RV+RFG  HGL  AEI AFP+VAHSAIKEMK
Sbjct: 61  FFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK 120

Query: 121 MGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADLAAGEDFS 180
           MGKWSLECAVCL EFQ YETLRLLPKCGHVFHP CIDAWLASCATCPICRA LAAGE+FS
Sbjct: 121 MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFS 180

Query: 181 SEFVAIGVVDRNGDDGLNGEVVDN 200
           SEFVAI VVD N     NG+VV N
Sbjct: 181 SEFVAIDVVDHN-----NGDVVHN 199

BLAST of Lsi01G007960 vs. ExPASy TrEMBL
Match: A0A5A7T2D1 (E3 ubiquitin-protein ligase ATL31-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003080 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.4e-54
Identity = 108/131 (82.44%), Postives = 116/131 (88.55%), Query Frame = 0

Query: 69  FLELNAASDAVLRAAGRVNRFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSLECAVCLT 128
           ++ELNAASDAVLR+  R++RFG  HGL PAEI AFP+VAHSAIKEMKMGKWSLECAVCL 
Sbjct: 10  WMELNAASDAVLRSLARLDRFGPSHGLKPAEILAFPLVAHSAIKEMKMGKWSLECAVCLA 69

Query: 129 EFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADLAAGEDFSSEFVAIGVVDRNG 188
           EFQ YETLRLLPKCGHVFHP CIDAWLASCATCPICRA+LAAGE+FSSEFVAIGVVDR  
Sbjct: 70  EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRANLAAGENFSSEFVAIGVVDR-- 129

Query: 189 DDGLNGEVVDN 200
               NGEVVDN
Sbjct: 130 ----NGEVVDN 134

BLAST of Lsi01G007960 vs. ExPASy TrEMBL
Match: A0A6J1BTV2 (E3 ubiquitin-protein ligase ATL6-like OS=Momordica charantia OX=3673 GN=LOC111005711 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 97/192 (50.52%), Postives = 126/192 (65.62%), Query Frame = 0

Query: 9   HFHSLSLLIILFYTYFSLTV------QAQPASDLNYLK----LSRPLTAAILLLLFIFFI 68
           H H L LL++LFY Y+ L        Q +  ++  YLK    LSRP+   I++L+ IFFI
Sbjct: 5   HIH-LHLLLLLFYAYYLLGANAFSGDQEEVEAEAEYLKLGPALSRPVAVLIVVLVSIFFI 64

Query: 69  ILFFSIYIRHFLELNAASDAVLRAAGRVNRFGTCH--GLDPAEIRAFPVVAH---SAIKE 128
           ++F S+Y+RH+LEL+A++ A + A G VNRFG     GLDPA IR FPVV +   SA+K+
Sbjct: 65  MVFLSVYLRHYLELHASTRATVTADG-VNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD 124

Query: 129 MKMGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADLAAGED 186
                  +ECAVCL EFQ +ETLRL+PKCGHVFHP CIDAWL  CATCP+CRA+L +G D
Sbjct: 125 ------HMECAVCLAEFQHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELVSGSD 184

BLAST of Lsi01G007960 vs. ExPASy TrEMBL
Match: A0A059D403 (RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B01999 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 0

Query: 12  SLSLLIILFYTYFS---LTVQAQPASD----LNYLKLSRPLTAAILLLLFIFFIILFFSI 71
           SL+LL++L+    S      QA P  D     NY + S  +   I++L+   F + FFSI
Sbjct: 13  SLALLLLLWSCASSAPFAAAQANPPPDSENPYNYTRFSPSMAVIIVVLIAALFFMAFFSI 72

Query: 72  YIRHFLELNAAS---DAVLRAAGRVNRFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSL 131
           YIRH  + N+AS      +   GR  R G   GLDPA I  FP + ++ +K +K+GK +L
Sbjct: 73  YIRHCSDANSASIRTGGGVVGTGRSRRGGASRGLDPAVIATFPTLVYADVKGLKIGKGAL 132

Query: 132 ECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADL 169
           ECAVCL EFQD ETLRL+PKC HVFHP C+DAWLAS  TCP+CRA+L
Sbjct: 133 ECAVCLNEFQDDETLRLIPKCDHVFHPECVDAWLASHTTCPVCRANL 179

BLAST of Lsi01G007960 vs. ExPASy TrEMBL
Match: A0A059C2T1 (RING-type domain-containing protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E00679 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 0

Query: 12  SLSLLIILFYTYFS---LTVQAQPASD----LNYLKLSRPLTAAILLLLFIFFIILFFSI 71
           SL+LL++L+    S      QA P  D     NY + S  +   I++L+   F + FFSI
Sbjct: 13  SLALLLLLWSCASSAPFAAAQANPPPDSENPYNYTRFSPSMAVIIVVLIAALFFMAFFSI 72

Query: 72  YIRHFLELNAAS---DAVLRAAGRVNRFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSL 131
           YIRH  + N+AS      +   GR  R G   GLDPA I  FP + ++ +K +K+GK +L
Sbjct: 73  YIRHCSDANSASIRTGGGVVGTGRSRRGGASRGLDPAVIATFPTLVYADVKGLKIGKGAL 132

Query: 132 ECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADL 169
           ECAVCL EFQD ETLRL+PKC HVFHP C+DAWLAS  TCP+CRA+L
Sbjct: 133 ECAVCLNEFQDDETLRLIPKCDHVFHPECVDAWLASHTTCPVCRANL 179

BLAST of Lsi01G007960 vs. NCBI nr
Match: KGN48724.1 (hypothetical protein Csa_004396 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 7.8e-71
Identity = 151/204 (74.02%), Postives = 167/204 (81.86%), Query Frame = 0

Query: 1   MKLRFN-DLHFHSLSLL-IILFYTYFSLTVQAQPA---SDLNYLKLSRPLTAAILLLLFI 60
           MKL F+   + HSLSLL IIL + +F++  Q  P+   S L+YLKLSRPLT  +LLLLFI
Sbjct: 1   MKLPFSFTPNLHSLSLLIIILLHPFFTVQAQQSPSQSQSHLHYLKLSRPLTVTVLLLLFI 60

Query: 61  FFIILFFSIYIRHFLELNAASDAVLRAAGRVNRFGTCHGLDPAEIRAFPVVAHSAIKEMK 120
           FFI+LFFS+YIRHFLELNAASDAVLR+  RV+RFG  HGL  AEI AFP+VAHSAIKEMK
Sbjct: 61  FFIVLFFSVYIRHFLELNAASDAVLRSLERVDRFGPSHGLKAAEIGAFPLVAHSAIKEMK 120

Query: 121 MGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADLAAGEDFS 180
           MGKWSLECAVCL EFQ YETLRLLPKCGHVFHP CIDAWLASCATCPICRA LAAGE+FS
Sbjct: 121 MGKWSLECAVCLAEFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRAQLAAGENFS 180

Query: 181 SEFVAIGVVDRNGDDGLNGEVVDN 200
           SEFVAI VVD N     NG+VV N
Sbjct: 181 SEFVAIDVVDHN-----NGDVVHN 199

BLAST of Lsi01G007960 vs. NCBI nr
Match: KAA0036326.1 (E3 ubiquitin-protein ligase ATL31-like [Cucumis melo var. makuwa] >TYK12720.1 E3 ubiquitin-protein ligase ATL31-like [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 5.1e-54
Identity = 108/131 (82.44%), Postives = 116/131 (88.55%), Query Frame = 0

Query: 69  FLELNAASDAVLRAAGRVNRFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSLECAVCLT 128
           ++ELNAASDAVLR+  R++RFG  HGL PAEI AFP+VAHSAIKEMKMGKWSLECAVCL 
Sbjct: 10  WMELNAASDAVLRSLARLDRFGPSHGLKPAEILAFPLVAHSAIKEMKMGKWSLECAVCLA 69

Query: 129 EFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADLAAGEDFSSEFVAIGVVDRNG 188
           EFQ YETLRLLPKCGHVFHP CIDAWLASCATCPICRA+LAAGE+FSSEFVAIGVVDR  
Sbjct: 70  EFQHYETLRLLPKCGHVFHPPCIDAWLASCATCPICRANLAAGENFSSEFVAIGVVDR-- 129

Query: 189 DDGLNGEVVDN 200
               NGEVVDN
Sbjct: 130 ----NGEVVDN 134

BLAST of Lsi01G007960 vs. NCBI nr
Match: XP_022133016.1 (E3 ubiquitin-protein ligase ATL6-like [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 3.3e-37
Identity = 97/192 (50.52%), Postives = 126/192 (65.62%), Query Frame = 0

Query: 9   HFHSLSLLIILFYTYFSLTV------QAQPASDLNYLK----LSRPLTAAILLLLFIFFI 68
           H H L LL++LFY Y+ L        Q +  ++  YLK    LSRP+   I++L+ IFFI
Sbjct: 5   HIH-LHLLLLLFYAYYLLGANAFSGDQEEVEAEAEYLKLGPALSRPVAVLIVVLVSIFFI 64

Query: 69  ILFFSIYIRHFLELNAASDAVLRAAGRVNRFGTCH--GLDPAEIRAFPVVAH---SAIKE 128
           ++F S+Y+RH+LEL+A++ A + A G VNRFG     GLDPA IR FPVV +   SA+K+
Sbjct: 65  MVFLSVYLRHYLELHASTRATVTADG-VNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD 124

Query: 129 MKMGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADLAAGED 186
                  +ECAVCL EFQ +ETLRL+PKCGHVFHP CIDAWL  CATCP+CRA+L +G D
Sbjct: 125 ------HMECAVCLAEFQHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELVSGSD 184

BLAST of Lsi01G007960 vs. NCBI nr
Match: KCW72235.1 (hypothetical protein EUGRSUZ_E00679, partial [Eucalyptus grandis])

HSP 1 Score: 145.2 bits (365), Expect = 6.0e-31
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 0

Query: 12  SLSLLIILFYTYFS---LTVQAQPASD----LNYLKLSRPLTAAILLLLFIFFIILFFSI 71
           SL+LL++L+    S      QA P  D     NY + S  +   I++L+   F + FFSI
Sbjct: 13  SLALLLLLWSCASSAPFAAAQANPPPDSENPYNYTRFSPSMAVIIVVLIAALFFMAFFSI 72

Query: 72  YIRHFLELNAAS---DAVLRAAGRVNRFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSL 131
           YIRH  + N+AS      +   GR  R G   GLDPA I  FP + ++ +K +K+GK +L
Sbjct: 73  YIRHCSDANSASIRTGGGVVGTGRSRRGGASRGLDPAVIATFPTLVYADVKGLKIGKGAL 132

Query: 132 ECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADL 169
           ECAVCL EFQD ETLRL+PKC HVFHP C+DAWLAS  TCP+CRA+L
Sbjct: 133 ECAVCLNEFQDDETLRLIPKCDHVFHPECVDAWLASHTTCPVCRANL 179

BLAST of Lsi01G007960 vs. NCBI nr
Match: KCW85161.1 (hypothetical protein EUGRSUZ_B01999 [Eucalyptus grandis])

HSP 1 Score: 145.2 bits (365), Expect = 6.0e-31
Identity = 81/167 (48.50%), Postives = 105/167 (62.87%), Query Frame = 0

Query: 12  SLSLLIILFYTYFS---LTVQAQPASD----LNYLKLSRPLTAAILLLLFIFFIILFFSI 71
           SL+LL++L+    S      QA P  D     NY + S  +   I++L+   F + FFSI
Sbjct: 13  SLALLLLLWSCASSAPFAAAQANPPPDSENPYNYTRFSPSMAVIIVVLIAALFFMAFFSI 72

Query: 72  YIRHFLELNAAS---DAVLRAAGRVNRFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSL 131
           YIRH  + N+AS      +   GR  R G   GLDPA I  FP + ++ +K +K+GK +L
Sbjct: 73  YIRHCSDANSASIRTGGGVVGTGRSRRGGASRGLDPAVIATFPTLVYADVKGLKIGKGAL 132

Query: 132 ECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADL 169
           ECAVCL EFQD ETLRL+PKC HVFHP C+DAWLAS  TCP+CRA+L
Sbjct: 133 ECAVCLNEFQDDETLRLIPKCDHVFHPECVDAWLASHTTCPVCRANL 179

BLAST of Lsi01G007960 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-29
Identity = 68/148 (45.95%), Postives = 88/148 (59.46%), Query Frame = 0

Query: 29  QAQPA---SDLNYLKLSRPLTAAILLLLFIFFIILFFSIYIRHFLELNAASDAVLRAAG- 88
           Q+QP       NY +LS  +   +++L+   F + FFSIY RH    +   DA +  AG 
Sbjct: 30  QSQPGPTNQPYNYGRLSPAMAVIVVILIAALFFMGFFSIYFRH---CSGVPDAGVSPAGG 89

Query: 89  ---RVNRFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSLECAVCLTEFQDYETLRLLPK 148
              R        GLD + +  FP   +S +K  K+GK  LECA+CL EF+D ETLRLLPK
Sbjct: 90  ARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPK 149

Query: 149 CGHVFHPACIDAWLASCATCPICRADLA 170
           C HVFHP CIDAWL +  TCP+CRA+LA
Sbjct: 150 CDHVFHPHCIDAWLEAHVTCPVCRANLA 174

BLAST of Lsi01G007960 vs. TAIR 10
Match: AT1G72200.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-26
Identity = 73/157 (46.50%), Postives = 90/157 (57.32%), Query Frame = 0

Query: 46  TAAILL--LLFIFFIILFFSIYIRHFLELNAASDAVLRAAGRVNRFGT--------CHGL 105
           T AIL+  L+ +FF + FFS+YIR  LE     D      G  N  G           GL
Sbjct: 62  TMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMD-----YGNPNDAGNWLATNRQQARGL 121

Query: 106 DPAEIRAFPVVAHSAIKEMKMGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWL 165
           D + I  FP   +S +K +++GK +LEC+VCL EF+D ETLRL+PKC HVFHP CIDAWL
Sbjct: 122 DASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL 181

Query: 166 ASCATCPICRADL--AAGEDFSSEFVAIGVVDRNGDD 191
            S  TCP+CRADL    GE   S  +   V D  G D
Sbjct: 182 RSHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGSD 213

BLAST of Lsi01G007960 vs. TAIR 10
Match: AT5G27420.1 (carbon/nitrogen insensitive 1 )

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-26
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 0

Query: 41  LSRPLTAAILLLLFIFFIILFFSIYIRHFLELNAASDAVLRAAG---RVNRFGTCHGLDP 100
           LS  +   +++++   F + FF++YIRH     A   +V  A G   RV       GLD 
Sbjct: 41  LSPAMAVVVVVVIAALFFMGFFTVYIRHC--TGAVDGSVTPAGGARRRVTNATVARGLDA 100

Query: 101 AEIRAFPVVAHSAIKEMKMGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLAS 160
             I  FP   +S +K  K+GK +LECA+CL EF+D ETLRLLPKC HVFHP CI AWL  
Sbjct: 101 ETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQG 160

Query: 161 CATCPICRADLA 170
             TCP+CR +LA
Sbjct: 161 HVTCPVCRTNLA 170

BLAST of Lsi01G007960 vs. TAIR 10
Match: AT1G22500.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 8.1e-26
Identity = 78/194 (40.21%), Postives = 108/194 (55.67%), Query Frame = 0

Query: 10  FHSLSLLIILFYTYFSLTVQAQPASDLNYLKLSRPLTAAILLLLF-IFFIILFFSIYIRH 69
           F+S  LL++L      + V +    D      S P TA I+++L  +FF +   S+Y+R 
Sbjct: 9   FYSSFLLLLL-----EVVVASSEFDDEGRTSFS-PTTAIIMIVLVSVFFALGCISVYMRR 68

Query: 70  FLELNAASDAVLRAAGRVN-RFGTCHGLDPAEIRAFPVVAHSAIKEMKMGKWSLECAVCL 129
            L+     D+       +N R  T  GLD + I  FP   +S +K +++GK +LEC VCL
Sbjct: 69  CLQHALGMDSGGGPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCL 128

Query: 130 TEFQDYETLRLLPKCGHVFHPACIDAWLASCATCPICRADL--AAGEDFSSEFVAIGVVD 189
            EF+D ETLRL+P+C HVFHP CIDAWL S  TCP+CRA+L    GE  SSE    G+  
Sbjct: 129 NEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIP--GLAR 188

Query: 190 RNGDDGLNGEVVDN 200
             G + L   + DN
Sbjct: 189 ETGQNSLRTPIDDN 194

BLAST of Lsi01G007960 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24
Identity = 60/128 (46.88%), Postives = 80/128 (62.50%), Query Frame = 0

Query: 46  TAAILLLLFIFFIILFFSIYIRHFLELNAASDAVL---RAAGRVNRFGTCHGLDPAEIRA 105
           T    +L+ +FF+    S+YIRH    N  S       RA    +R G   GLD A + +
Sbjct: 47  TTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRG---GLDNAVVES 106

Query: 106 FPVVAHSAIKEMKMGKWSLECAVCLTEFQDYETLRLLPKCGHVFHPACIDAWLASCATCP 165
           FPV A+S++KE K+G   LECA+CL E +D+ET+RLLP C H+FH  CID WL S ATCP
Sbjct: 107 FPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCP 166

Query: 166 ICRADLAA 171
           +CR++L A
Sbjct: 167 VCRSNLTA 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8RXX95.0e-2845.95E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV... [more]
Q84W401.8e-2546.50RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2[more]
Q8LGA52.3e-2546.21E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ... [more]
Q9SK921.1e-2440.21E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 ... [more]
Q8W5711.6e-2346.88RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3[more]
Match NameE-valueIdentityDescription
A0A0A0KIT73.8e-7174.02RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499190 P... [more]
A0A5A7T2D12.4e-5482.44E3 ubiquitin-protein ligase ATL31-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1BTV21.6e-3750.52E3 ubiquitin-protein ligase ATL6-like OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A059D4032.9e-3148.50RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B0... [more]
A0A059C2T12.9e-3148.50RING-type domain-containing protein (Fragment) OS=Eucalyptus grandis OX=71139 GN... [more]
Match NameE-valueIdentityDescription
KGN48724.17.8e-7174.02hypothetical protein Csa_004396 [Cucumis sativus][more]
KAA0036326.15.1e-5482.44E3 ubiquitin-protein ligase ATL31-like [Cucumis melo var. makuwa] >TYK12720.1 E3... [more]
XP_022133016.13.3e-3750.52E3 ubiquitin-protein ligase ATL6-like [Momordica charantia][more]
KCW72235.16.0e-3148.50hypothetical protein EUGRSUZ_E00679, partial [Eucalyptus grandis][more]
KCW85161.16.0e-3148.50hypothetical protein EUGRSUZ_B01999 [Eucalyptus grandis][more]
Match NameE-valueIdentityDescription
AT3G05200.13.5e-2945.95RING/U-box superfamily protein [more]
AT1G72200.11.3e-2646.50RING/U-box superfamily protein [more]
AT5G27420.11.6e-2646.21carbon/nitrogen insensitive 1 [more]
AT1G22500.18.1e-2640.21RING/U-box superfamily protein [more]
AT4G40070.11.2e-2446.88RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 123..164
e-value: 1.2E-6
score: 38.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 122..165
e-value: 8.0E-13
score: 48.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 123..165
score: 12.681067
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 97..173
e-value: 1.4E-19
score: 71.0
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 15..174
NoneNo IPR availablePANTHERPTHR14155:SF263E3 UBIQUITIN-PROTEIN LIGASE ATL6coord: 15..174
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 122..165
e-value: 7.16043E-18
score: 71.5641
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 122..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G007960.1Lsi01G007960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane