Lsi01G007810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G007810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEpidermal patterning factor-like protein
Locationchr01: 6120609 .. 6121837 (-)
RNA-Seq ExpressionLsi01G007810
SyntenyLsi01G007810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGTTTTCCCCCCATTGTATTGTTCCTTTCACTGTTCTGCTGCAATCTGCCCTCTTACTCAGAACTTCTCTGCTCTCTCCTCTCTCCTCTCTCGTTCTTGTCGGATAACTTATGACTCACCCACCCTTTCCTACACCAATTTATGCCATCTCTCTCTCGTCTCTCTCTCTCTGTTTCCCTTGCACTTGCCTCATTAAATAGTCATCTCTCTCTTTCTCTCTCTCTCTCTCTTAGCTACTTGTGGTTGTGGTTGTGGTGTGGTGGGTGGAAGTGGAACAAAGTAACAGAAAAATCTGGCAACTGGGTCTTTATTGCGTATGATTTTTACTCCTTTGCTTCGTTGGATCCATGAGTTTCGGGCATCAATGACTTGATGACTACCATGAATTTGCCTACTGTTTGGGCCACCTCATTACTTATTGTGCTTCTGCATCTTCTTCTTCTTCTCTCCGCCTCTTCTCCTCCCAGAGTATACCCTCTCTCTCTCTCTCTCTTCCATGGCTTTCTTAATCTTTTCATATTTGATATTTCTTTTAGCGACTCTGTTTCTGAGTTTTTTTTTGTTTGCTGGTTTCATCAGGGCATATTTTTCGAAGACAAAACCAGGCTTGGATCCACCCCACCAAGCTGCCACAACAAGTGCAACGAGTGCCACCCATGCATGGCTGTGCAAGTGCCTAGCATGCCAGGCCGCGCCGGCCGGTTGGATTCGAACTCGGCTTTGCCTATGCGATTTTTTGACTCGTCTTCTCAAGGGAACAGATACTCATTTTACAAGCCATTGGGTTGGAAATGCCGGTGTGGAAATCACTTCTTCAATCCTTAGACCAAATTTGCATGTCCAGTCTAGAGGGTTGGTCTTCCTTCCATTCTTCTGGTTTTGTAAATGACATTGAATTTATTTCTTTTAGGATGGAATTCTTTGTTCAGAGATAAGCAGGAAGTTCGGTTTTTGCATTTATTGTACATATACTCCCAACTGATCTATATCATCTATCACCTAGAGAGATCAACATTTACCCTACTTTTAGTTCTAGTTCTACCTACATGCTTCCATGTTTTTTTTTATTATTGTTTTTTCTTTTTGAGGAAAAACATCTAAACTAGATGATATAGAAACTCCTTTGTTTGGTGTTTTTCTTTGTAAATTATTTTTGAGTATGGGACATCGCTTAGCTTTTTCTTATCTTCTTGGGATTTACATAAAGTTCTGACACAACATGTCTC

mRNA sequence

ATTTGTTTTCCCCCCATTGTATTGTTCCTTTCACTGTTCTGCTGCAATCTGCCCTCTTACTCAGAACTTCTCTGCTCTCTCCTCTCTCCTCTCTCGTTCTTGTCGGATAACTTATGACTCACCCACCCTTTCCTACACCAATTTATGCCATCTCTCTCTCGTCTCTCTCTCTCTGTTTCCCTTGCACTTGCCTCATTAAATAGTCATCTCTCTCTTTCTCTCTCTCTCTCTCTTAGCTACTTGTGGTTGTGGTTGTGGTGTGGTGGGTGGAAGTGGAACAAAGTAACAGAAAAATCTGGCAACTGGGTCTTTATTGCGTATGATTTTTACTCCTTTGCTTCGTTGGATCCATGAGTTTCGGGCATCAATGACTTGATGACTACCATGAATTTGCCTACTGTTTGGGCCACCTCATTACTTATTGTGCTTCTGCATCTTCTTCTTCTTCTCTCCGCCTCTTCTCCTCCCAGAGGCATATTTTTCGAAGACAAAACCAGGCTTGGATCCACCCCACCAAGCTGCCACAACAAGTGCAACGAGTGCCACCCATGCATGGCTGTGCAAGTGCCTAGCATGCCAGGCCGCGCCGGCCGGTTGGATTCGAACTCGGCTTTGCCTATGCGATTTTTTGACTCGTCTTCTCAAGGGAACAGATACTCATTTTACAAGCCATTGGGTTGGAAATGCCGGTGTGGAAATCACTTCTTCAATCCTTAGACCAAATTTGCATGTCCAGTCTAGAGGGTTGGTCTTCCTTCCATTCTTCTGGTTTTGTAAATGACATTGAATTTATTTCTTTTAGGATGGAATTCTTTGTTCAGAGATAAGCAGGAAGTTCGGTTTTTGCATTTATTGTACATATACTCCCAACTGATCTATATCATCTATCACCTAGAGAGATCAACATTTACCCTACTTTTAGTTCTAGTTCTACCTACATGCTTCCATGTTTTTTTTTATTATTGTTTTTTCTTTTTGAGGAAAAACATCTAAACTAGATGATATAGAAACTCCTTTGTTTGGTGTTTTTCTTTGTAAATTATTTTTGAGTATGGGACATCGCTTAGCTTTTTCTTATCTTCTTGGGATTTACATAAAGTTCTGACACAACATGTCTC

Coding sequence (CDS)

ATGACTACCATGAATTTGCCTACTGTTTGGGCCACCTCATTACTTATTGTGCTTCTGCATCTTCTTCTTCTTCTCTCCGCCTCTTCTCCTCCCAGAGGCATATTTTTCGAAGACAAAACCAGGCTTGGATCCACCCCACCAAGCTGCCACAACAAGTGCAACGAGTGCCACCCATGCATGGCTGTGCAAGTGCCTAGCATGCCAGGCCGCGCCGGCCGGTTGGATTCGAACTCGGCTTTGCCTATGCGATTTTTTGACTCGTCTTCTCAAGGGAACAGATACTCATTTTACAAGCCATTGGGTTGGAAATGCCGGTGTGGAAATCACTTCTTCAATCCTTAG

Protein sequence

MTTMNLPTVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP
Homology
[Close]
BLAST of Lsi01G007810 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.8e-20
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 0 

Query: 9   VWATSLLIVLLHLLLLLSAS-----------SPPRGIFFEDKTRLGSTPPSCHNKCNECH 68
           ++ ++LL++ L L+LL++               P+    EDK RLGSTPPSCHN+CN CH
Sbjct: 4   IYKSTLLLLPLILILLITPQVSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNCH 63

Query: 69  PCMAVQVPSMPGRA--GRLDSNSALPMRFFDS-SSQGNRYSFYKPLGWKCRCGNHFFNP 114
           PCMA+QVP++P R+   R++  S   +R   S ++  ++YS YKP+GWKC C  HF+NP
Sbjct: 64  PCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]
BLAST of Lsi01G007810 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 37/127 (29.13%), Postives = 59/127 (46.46%), Query Frame = 0 

Query: 9   VWA---TSLLIVLL-----HLLLLLSASSPPRGIFFED----------KTRLGSTPPSCH 68
           VW+   +S L++LL     H  L+ +    P  + F            +  +GS PP C 
Sbjct: 2   VWSSNMSSFLLILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCE 61

Query: 69  N-KCNECHPCMAVQVPSMPG---RAGRLDSNSALPMRFFDSSSQGNRYSFYKPLGWKCRC 114
             +C  C  C A+QVP+ P     +    S+S+         ++G+  + YKP+ WKC+C
Sbjct: 62  RVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKC 121

[Close]
BLAST of Lsi01G007810 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.8e-06
Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 0 

Query: 39  KTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYK 98
           + R+GS PPSC  KC  C PC A+Q P++          S++P            Y+ Y+
Sbjct: 54  RRRIGSKPPSCEKKCYGCEPCEAIQFPTI----------SSIP-------HLSPHYANYQ 104

Query: 99  PLGWKCRC 107
           P GW+C C
Sbjct: 114 PEGWRCHC 104

[Close]
BLAST of Lsi01G007810 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-05
Identity = 24/72 (33.33%), Postives = 30/72 (41.67%), Query Frame = 0 

Query: 42  LGSTPPSCHNKCNECHPCMAVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYKPLG 101
           LGS+PP C +KC  C PC  V VP  PG     +                     Y P  
Sbjct: 106 LGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAE---------------------YYPEA 156

Query: 102 WKCRCGNHFFNP 114
           W+C+CGN  + P
Sbjct: 166 WRCKCGNKLYMP 156

[Close]
BLAST of Lsi01G007810 vs. ExPASy TrEMBL
Match: A0A1S3B112 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103484960 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 7.9e-58
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MTTMNLPTVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL TVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM
Sbjct: 22  MTTMNLATVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM 81

Query: 61  AVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 114
           AVQVPSMPGRA RLDS+SALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP
Sbjct: 82  AVQVPSMPGRASRLDSSSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 134

[Close]
BLAST of Lsi01G007810 vs. ExPASy TrEMBL
Match: A0A0A0KGR1 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G499820 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 3.9e-57
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0 

Query: 1   MTTMNLPTVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL TVWATSLLIVLLHLLLLLSASSPPRG+FFEDKTRLGSTPPSCHNKCNECHPCM
Sbjct: 5   MTTMNLATVWATSLLIVLLHLLLLLSASSPPRGMFFEDKTRLGSTPPSCHNKCNECHPCM 64

Query: 61  AVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 114
           AVQVPSMPGRA RLDS SALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP
Sbjct: 65  AVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 117

[Close]
BLAST of Lsi01G007810 vs. ExPASy TrEMBL
Match: A0A5A7T0A6 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002950 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.6e-42
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 33  GIFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRAGRLDSNSALPMRFFDSSSQGN 92
           GIFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRA RLDS+SALPMRFFDSSSQGN
Sbjct: 29  GIFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRASRLDSSSALPMRFFDSSSQGN 88

Query: 93  RYSFYKPLGWKCRCGNHFFNP 114
           RYSFYKPLGWKCRCGNHFFNP
Sbjct: 89  RYSFYKPLGWKCRCGNHFFNP 109

[Close]
BLAST of Lsi01G007810 vs. ExPASy TrEMBL
Match: F6HJL0 (Epidermal patterning factor-like protein OS=Vitis vinifera OX=29760 GN=VIT_00s0391g00030 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.7e-29
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 0 

Query: 1   MTTMNLPTVWATSLLIVLLHLLLLLSA-------SSPPRGIFFEDKTRLGSTPPSCHNKC 60
           M ++    ++  +++  +LHLLL  ++       S   RG+ FE+KTRLGSTPPSCHNKC
Sbjct: 1   MNSLGSYLLYTITVVTAVLHLLLSPASCFSQQQGSDSTRGLLFEEKTRLGSTPPSCHNKC 60

Query: 61  NECHPCMAVQVPSMPGRAG-RLDSNSALPMRFFDS--SSQGNRYSFYKPLGWKCRCGNHF 114
           NECHPCMAVQVP++P  +G RL   + +PM FF+S  S+  NRYS YKPLGWKC CG+HF
Sbjct: 61  NECHPCMAVQVPTLPSHSGPRLGLTATVPMEFFESSPSTAANRYSNYKPLGWKCHCGDHF 120

[Close]
BLAST of Lsi01G007810 vs. ExPASy TrEMBL
Match: A0A438KPW6 (Epidermal patterning factor-like protein OS=Vitis vinifera OX=29760 GN=EPFL1 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.7e-29
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 0 

Query: 1   MTTMNLPTVWATSLLIVLLHLLLLLSA-------SSPPRGIFFEDKTRLGSTPPSCHNKC 60
           M ++    ++  +++  +LHLLL  ++       S   RG+ FE+KTRLGSTPPSCHNKC
Sbjct: 1   MNSLGSYLLYTITVVTAVLHLLLSPASCFSQQQGSDSTRGLLFEEKTRLGSTPPSCHNKC 60

Query: 61  NECHPCMAVQVPSMPGRAG-RLDSNSALPMRFFDS--SSQGNRYSFYKPLGWKCRCGNHF 114
           NECHPCMAVQVP++P  +G RL   + +PM FF+S  S+  NRYS YKPLGWKC CG+HF
Sbjct: 61  NECHPCMAVQVPTLPSHSGPRLGLTATVPMEFFESSPSTAANRYSNYKPLGWKCHCGDHF 120

[Close]
BLAST of Lsi01G007810 vs. NCBI nr
Match: XP_008440584.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 1.6e-57
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MTTMNLPTVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL TVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM
Sbjct: 22  MTTMNLATVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM 81

Query: 61  AVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 114
           AVQVPSMPGRA RLDS+SALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP
Sbjct: 82  AVQVPSMPGRASRLDSSSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 134

[Close]
BLAST of Lsi01G007810 vs. NCBI nr
Match: KGN48738.1 (hypothetical protein Csa_003101 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 8.1e-57
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0 

Query: 1   MTTMNLPTVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL TVWATSLLIVLLHLLLLLSASSPPRG+FFEDKTRLGSTPPSCHNKCNECHPCM
Sbjct: 5   MTTMNLATVWATSLLIVLLHLLLLLSASSPPRGMFFEDKTRLGSTPPSCHNKCNECHPCM 64

Query: 61  AVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 114
           AVQVPSMPGRA RLDS SALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP
Sbjct: 65  AVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 117

[Close]
BLAST of Lsi01G007810 vs. NCBI nr
Match: KAG6604039.1 (EPIDERMAL PATTERNING FACTOR-like protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034205.1 EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 6.6e-51
Identity = 101/113 (89.38%), Postives = 103/113 (91.15%), Query Frame = 0 

Query: 1   MTTMNLPTVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL TVWATSLL+VL+HLL LLSAS PP GI FEDKTRLGSTPPSCHNKCNECHPCM
Sbjct: 1   MTTMNLATVWATSLLLVLVHLLPLLSASPPPIGISFEDKTRLGSTPPSCHNKCNECHPCM 60

Query: 61  AVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 114
           AVQVPSMP RAGRLDS SALPMRFFDSS QGNRYSFYKPL WKCRCGN FFNP
Sbjct: 61  AVQVPSMPRRAGRLDSPSALPMRFFDSSPQGNRYSFYKPLSWKCRCGNRFFNP 113

[Close]
BLAST of Lsi01G007810 vs. NCBI nr
Match: KAA0036313.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo var. makuwa] >TYK12707.1 EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 7.3e-42
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 33  GIFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRAGRLDSNSALPMRFFDSSSQGN 92
           GIFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRA RLDS+SALPMRFFDSSSQGN
Sbjct: 29  GIFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRASRLDSSSALPMRFFDSSSQGN 88

Query: 93  RYSFYKPLGWKCRCGNHFFNP 114
           RYSFYKPLGWKCRCGNHFFNP
Sbjct: 89  RYSFYKPLGWKCRCGNHFFNP 109

[Close]
BLAST of Lsi01G007810 vs. NCBI nr
Match: XP_010646934.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Vitis vinifera] >RVX23244.1 Epidermal patterning factor-like protein 1 [Vitis vinifera])

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-28
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 0 

Query: 1   MTTMNLPTVWATSLLIVLLHLLLLLSA-------SSPPRGIFFEDKTRLGSTPPSCHNKC 60
           M ++    ++  +++  +LHLLL  ++       S   RG+ FE+KTRLGSTPPSCHNKC
Sbjct: 1   MNSLGSYLLYTITVVTAVLHLLLSPASCFSQQQGSDSTRGLLFEEKTRLGSTPPSCHNKC 60

Query: 61  NECHPCMAVQVPSMPGRAG-RLDSNSALPMRFFDS--SSQGNRYSFYKPLGWKCRCGNHF 114
           NECHPCMAVQVP++P  +G RL   + +PM FF+S  S+  NRYS YKPLGWKC CG+HF
Sbjct: 61  NECHPCMAVQVPTLPSHSGPRLGLTATVPMEFFESSPSTAANRYSNYKPLGWKCHCGDHF 120

[Close]
BLAST of Lsi01G007810 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-21
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 0 

Query: 9   VWATSLLIVLLHLLLLLSAS-----------SPPRGIFFEDKTRLGSTPPSCHNKCNECH 68
           ++ ++LL++ L L+LL++               P+    EDK RLGSTPPSCHN+CN CH
Sbjct: 4   IYKSTLLLLPLILILLITPQVSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNCH 63

Query: 69  PCMAVQVPSMPGRA--GRLDSNSALPMRFFDS-SSQGNRYSFYKPLGWKCRCGNHFFNP 114
           PCMA+QVP++P R+   R++  S   +R   S ++  ++YS YKP+GWKC C  HF+NP
Sbjct: 64  PCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]
BLAST of Lsi01G007810 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-08
Identity = 37/127 (29.13%), Postives = 59/127 (46.46%), Query Frame = 0 

Query: 9   VWA---TSLLIVLL-----HLLLLLSASSPPRGIFFED----------KTRLGSTPPSCH 68
           VW+   +S L++LL     H  L+ +    P  + F            +  +GS PP C 
Sbjct: 2   VWSSNMSSFLLILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCE 61

Query: 69  N-KCNECHPCMAVQVPSMPG---RAGRLDSNSALPMRFFDSSSQGNRYSFYKPLGWKCRC 114
             +C  C  C A+QVP+ P     +    S+S+         ++G+  + YKP+ WKC+C
Sbjct: 62  RVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKC 121

[Close]
BLAST of Lsi01G007810 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 51.2 bits (121), Expect = 6.3e-07
Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 0 

Query: 39  KTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYK 98
           + R+GS PPSC  KC  C PC A+Q P++          S++P            Y+ Y+
Sbjct: 54  RRRIGSKPPSCEKKCYGCEPCEAIQFPTI----------SSIP-------HLSPHYANYQ 104

Query: 99  PLGWKCRC 107
           P GW+C C
Sbjct: 114 PEGWRCHC 104

[Close]
BLAST of Lsi01G007810 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-07
Identity = 24/72 (33.33%), Postives = 30/72 (41.67%), Query Frame = 0 

Query: 42  LGSTPPSCHNKCNECHPCMAVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYKPLG 101
           LGS+PP C +KC  C PC  V VP  PG     +                     Y P  
Sbjct: 180 LGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAE---------------------YYPEA 230

Query: 102 WKCRCGNHFFNP 114
           W+C+CGN  + P
Sbjct: 240 WRCKCGNKLYMP 230

[Close]
BLAST of Lsi01G007810 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-07
Identity = 24/72 (33.33%), Postives = 30/72 (41.67%), Query Frame = 0 

Query: 42  LGSTPPSCHNKCNECHPCMAVQVPSMPGRAGRLDSNSALPMRFFDSSSQGNRYSFYKPLG 101
           LGS+PP C +KC  C PC  V VP  PG     +                     Y P  
Sbjct: 106 LGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAE---------------------YYPEA 156

Query: 102 WKCRCGNHFFNP 114
           W+C+CGN  + P
Sbjct: 166 WRCKCGNKLYMP 156

The following BLAST results are available for this feature:
BLAST of Lsi01G007810 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFT54.8e-2043.70EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9T0681.0e-0629.13EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
C4B8C48.8e-0635.29EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q1PEY61.1e-0533.33EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
BLAST of Lsi01G007810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B1127.9e-5897.35Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103484960... [more]
A0A0A0KGR13.9e-5796.46Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G499... [more]
A0A5A7T0A63.6e-4297.53Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
F6HJL07.7e-2954.47Epidermal patterning factor-like protein OS=Vitis vinifera OX=29760 GN=VIT_00s03... [more]
A0A438KPW67.7e-2954.47Epidermal patterning factor-like protein OS=Vitis vinifera OX=29760 GN=EPFL1 PE=... [more]
BLAST of Lsi01G007810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008440584.11.6e-5797.35PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo][more]
KGN48738.18.1e-5796.46hypothetical protein Csa_003101 [Cucumis sativus][more]
KAG6604039.16.6e-5189.38EPIDERMAL PATTERNING FACTOR-like protein 1, partial [Cucurbita argyrosperma subs... [more]
KAA0036313.17.3e-4297.53EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo var. makuwa] >TYK12707.... [more]
XP_010646934.11.6e-2854.47PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Vitis vinifera] >RVX23244... [more]
BLAST of Lsi01G007810 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G10310.13.4e-2143.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G37810.17.4e-0829.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13898.16.3e-0735.29unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot... [more]
AT2G30370.18.2e-0733.33allergen-related [more]
AT2G30370.28.2e-0733.33allergen-related [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 41..113
e-value: 4.8E-22
score: 77.7
NoneNo IPR availablePANTHERPTHR33109:SF3EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 1coord: 12..113
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 12..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G007810.1Lsi01G007810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0005576 extracellular region
cellular_component GO:0016021 integral component of membrane