Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTCATTTCTGACATTTAATTGATGTTGCTGATGAAAATTAGTGGGTAATTTAAACGTTAAAGCGGGTTCTTTATCACGTTGGTTGGTGACCAGAACCCGACAAGAAAAGAAAAAGGCAAAAATAAAATAAACTGAAAATAAAAAGTGGAGGAAGTAAAAGTAAAAACAGAGATTTCCAAATTGAAGGAACTGAGACAGGGTAAACCAACAAGATGCGAGGGCATAGTCAGCAACATGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCGCCGTACTATTCATTTCTGTTAACATGTCCCATCATATTCTGTTAGAAATTATAATAAATCCTTATCGTTACTAATCATCAAGTTTTAAAATTGTAAAACAAAAGGACCAGAATTAATTGTGTGGTATGTCAATCTTAAATGGTATAAAATCAGGTGAACTGGCGGCAACGTTGTTTTGGTATTAATGGTTTCATTAAAATCTGTTGCCTACCATGTTGAGTTCAAAGTCCTTGTGTGGTTTCTGTCTCTGTTTTTCTGGATTGCAACAACCATTTGCAAGTGATATTGTTGGTTGCTGACATGTTTAACCTTATGGACCATTGTGCTCTTGGGAATTTTGTTGCAGGATCCCCTTGGAGCATTTCTGATCAAACCTGGAATGAAAGGAGATAGTCCCACCCAGTGCCCATCAACCACACCACTTGACGCTGAAGAAGATGGCGATGATGATGATGAGGACGGGGATGGTGACTTGAGTGAAGGTGAAGGTGAAGAGGATTTATCATCTGAAGATGGAGATGATGACTACACCAACAACTTCAACGACAATAACAAAGGTAATTCAAAGAAGAATCCGGAGGGTGGAGCTGGTGGGGCAGAAGAGAATGGAGAGGAAGAAGAAGAGTTTGATGGGGAGGAGGATCAAGATGACGACGGCGACGACGATGACGATAACGATGATGGTGATGATGATGACGATGATGATGATGGTGATGACGATGATGATGGTGGAGAGGACGAGGATGAAGTAGCAGATGAGGATGAAGACGAAGAAGAAGAGGATGAGGATGAAGATGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA
mRNA sequence
ATGGATGATCCCCTTGGAGCATTTCTGATCAAACCTGGAATGAAAGGAGATAGTCCCACCCAGTGCCCATCAACCACACCACTTGACGCTGAAGAAGATGGCGATGATGATGATGAGGACGGGGATGGTGACTTGAGTGAAGGTGAAGGTGAAGAGGATTTATCATCTGAAGATGGAGATGATGACTACACCAACAACTTCAACGACAATAACAAAGGTAATTCAAAGAAGAATCCGGAGGGTGGAGCTGGTGGGGCAGAAGAGAATGGAGAGGAAGAAGAAGAGTTTGATGGGGAGGAGGATCAAGATGACGACGGCGACGACGATGACGATAACGATGATGGTGATGATGATGACGATGATGATGATGGTGATGACGATGATGATGGTGGAGAGGACGAGGATGAAGTAGCAGATGAGGATGAAGACGAAGAAGAAGAGGATGAGGATGAAGATGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA
Coding sequence (CDS)
ATGGATGATCCCCTTGGAGCATTTCTGATCAAACCTGGAATGAAAGGAGATAGTCCCACCCAGTGCCCATCAACCACACCACTTGACGCTGAAGAAGATGGCGATGATGATGATGAGGACGGGGATGGTGACTTGAGTGAAGGTGAAGGTGAAGAGGATTTATCATCTGAAGATGGAGATGATGACTACACCAACAACTTCAACGACAATAACAAAGGTAATTCAAAGAAGAATCCGGAGGGTGGAGCTGGTGGGGCAGAAGAGAATGGAGAGGAAGAAGAAGAGTTTGATGGGGAGGAGGATCAAGATGACGACGGCGACGACGATGACGATAACGATGATGGTGATGATGATGACGATGATGATGATGGTGATGACGATGATGATGGTGGAGAGGACGAGGATGAAGTAGCAGATGAGGATGAAGACGAAGAAGAAGAGGATGAGGATGAAGATGAGGAAGCACTCCAGCCTCCCAAGAAGAGGAAGAAGTAA
Protein sequence
MDDPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDEDGDGDLSEGEGEEDLSSEDGDDDYTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDDDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Homology
BLAST of Lsi01G007280 vs. ExPASy TrEMBL
Match:
A0A6J1IJG0 (prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111477642 PE=4 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 8.8e-50
Identity = 149/162 (91.98%), Postives = 153/162 (94.44%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDEDGDGDLSEGEGEEDLSSEDGDDD 62
DPLGAFLIKPGMKGDSPTQCPS PLDAE D DDDD+DGDGDLSEGEG+EDLSSEDG DD
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGD-DDDDDDGDGDLSEGEGDEDLSSEDG-DD 100
Query: 63 YTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD 122
Y NN NDN+K NSKK PEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDD+DD
Sbjct: 101 YANNLNDNSKSNSKKTPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDD 160
Query: 123 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 200
BLAST of Lsi01G007280 vs. ExPASy TrEMBL
Match:
A0A6J1GGT6 (prostatic spermine-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111453777 PE=4 SV=1)
HSP 1 Score: 204.1 bits (518), Expect = 4.4e-49
Identity = 150/163 (92.02%), Postives = 154/163 (94.48%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDEDGDGDLSEGEGEEDLSSEDGDDD 62
DPLGAFLIKPGMKGDSPTQCPS PLDAE D DDDD+DGDGDLSEGEG+EDLSSEDG DD
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGD-DDDDDDGDGDLSEGEGDEDLSSEDG-DD 100
Query: 63 YTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD 122
Y NN NDN+K NSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDD+DD
Sbjct: 101 YANNLNDNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDD 160
Query: 123 DG-DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
DG DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DGDDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 201
BLAST of Lsi01G007280 vs. ExPASy TrEMBL
Match:
A0A6J1BSS9 (phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Momordica charantia OX=3673 GN=LOC111005439 PE=4 SV=1)
HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45
Identity = 144/162 (88.89%), Postives = 149/162 (91.98%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDEDGDGDLSEGEGEEDLSSEDGDDD 62
+PLG FLI+PGMKGDSPTQCPS+TPLDAE DGDDDDEDGDGD + GEEDLSSEDG DD
Sbjct: 41 NPLGIFLIRPGMKGDSPTQCPSSTPLDAEGDGDDDDEDGDGD-GDLSGEEDLSSEDG-DD 100
Query: 63 YTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD 122
Y NN NDNNK NSKKNPE GGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD
Sbjct: 101 YANNLNDNNKSNSKKNPE---GGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD 160
Query: 123 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
DGDDDDDGGEDEDEVADEDEDEEEE+EDEDEEALQPPKKRKK
Sbjct: 161 DGDDDDDGGEDEDEVADEDEDEEEEEEDEDEEALQPPKKRKK 197
BLAST of Lsi01G007280 vs. ExPASy TrEMBL
Match:
A0A0A0KIZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501250 PE=4 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 3.6e-43
Identity = 144/165 (87.27%), Postives = 148/165 (89.70%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDE-DGDGDLSEGEGEEDLSSEDGDD 62
D LGAFLI P MKGDS T CPS+TPLDA D DDDDE DGDGDLSEGEGEEDLSSEDG D
Sbjct: 53 DSLGAFLINPEMKGDSSTLCPSSTPLDAGGDVDDDDEGDGDGDLSEGEGEEDLSSEDG-D 112
Query: 63 DYTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDD 122
DYTNN NDNNK NSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGD+DDDD
Sbjct: 113 DYTNNLNDNNKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDEDDDD 172
Query: 123 DDG--DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
+DG DDDDDGGEDEDEVAD DE+EEDEDEDEEALQPPKKRKK
Sbjct: 173 EDGDDDDDDDGGEDEDEVAD---DEDEEDEDEDEEALQPPKKRKK 213
BLAST of Lsi01G007280 vs. ExPASy TrEMBL
Match:
A0A6J1KLW4 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucurbita maxima OX=3661 GN=LOC111496904 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 140/162 (86.42%), Postives = 148/162 (91.36%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDEDGDGDLSEGEGEEDLSSEDGDDD 62
+PLGA LIKPGMKG+SPTQC S TPLDAEEDG DDDEDGDGDLSEGE EEDLSSEDG D
Sbjct: 41 EPLGARLIKPGMKGNSPTQCSSCTPLDAEEDG-DDDEDGDGDLSEGEDEEDLSSEDG-DK 100
Query: 63 YTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD 122
Y NN N NNK NSKK+ EGGAGGAEENGE+EEEFDG EDQDDDGDDDDDNDDGDDDD+DD
Sbjct: 101 YANNLNGNNKSNSKKSQEGGAGGAEENGEDEEEFDG-EDQDDDGDDDDDNDDGDDDDEDD 160
Query: 123 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
DG+DDDDGGEDEDEVADE+ED E+EDEDEDEEALQPPKKRKK
Sbjct: 161 DGEDDDDGGEDEDEVADEEED-EDEDEDEDEEALQPPKKRKK 198
BLAST of Lsi01G007280 vs. NCBI nr
Match:
XP_038881735.1 (nucleolin [Benincasa hispida] >XP_038881737.1 nucleolin [Benincasa hispida])
HSP 1 Score: 214.2 bits (544), Expect = 8.7e-52
Identity = 151/163 (92.64%), Postives = 158/163 (96.93%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDE-DGDGDLSEGEGEEDLSSEDGDD 62
DPLGAFLI PGMKGDSPTQCPS+TPLDAEEDGDDDD+ DGDGDLSEGEGEEDLSSEDG D
Sbjct: 41 DPLGAFLINPGMKGDSPTQCPSSTPLDAEEDGDDDDDGDGDGDLSEGEGEEDLSSEDG-D 100
Query: 63 DYTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDD 122
DYTNN N+NNK NSKKNPEGGAGGAEENGEEE+EFDGEEDQDDDGDDDDDNDDGDDDD+D
Sbjct: 101 DYTNNLNENNKSNSKKNPEGGAGGAEENGEEEDEFDGEEDQDDDGDDDDDNDDGDDDDED 160
Query: 123 DDGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
DDGD+DDDGGEDEDEVADE+EDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DDGDEDDDGGEDEDEVADEEEDEEEEDEDEDEEALQPPKKRKK 202
BLAST of Lsi01G007280 vs. NCBI nr
Match:
XP_023543922.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo] >XP_023543924.1 prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 208.8 bits (530), Expect = 3.6e-50
Identity = 150/162 (92.59%), Postives = 154/162 (95.06%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDEDGDGDLSEGEGEEDLSSEDGDDD 62
DPLGAFLIKPGMKGDSPTQCPS PLDAE D DDDD+DGDGDLSEGEG+EDLSSEDG DD
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGD-DDDDDDGDGDLSEGEGDEDLSSEDG-DD 100
Query: 63 YTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD 122
Y NN NDN+K NSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDD+DD
Sbjct: 101 YANNLNDNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDD 160
Query: 123 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 200
BLAST of Lsi01G007280 vs. NCBI nr
Match:
XP_022977276.1 (prostatic spermine-binding protein-like [Cucurbita maxima])
HSP 1 Score: 206.5 bits (524), Expect = 1.8e-49
Identity = 149/162 (91.98%), Postives = 153/162 (94.44%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDEDGDGDLSEGEGEEDLSSEDGDDD 62
DPLGAFLIKPGMKGDSPTQCPS PLDAE D DDDD+DGDGDLSEGEG+EDLSSEDG DD
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGD-DDDDDDGDGDLSEGEGDEDLSSEDG-DD 100
Query: 63 YTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD 122
Y NN NDN+K NSKK PEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDD+DD
Sbjct: 101 YANNLNDNSKSNSKKTPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDD 160
Query: 123 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 200
BLAST of Lsi01G007280 vs. NCBI nr
Match:
XP_022950769.1 (prostatic spermine-binding protein [Cucurbita moschata] >XP_022950770.1 prostatic spermine-binding protein [Cucurbita moschata] >XP_022950773.1 prostatic spermine-binding protein [Cucurbita moschata])
HSP 1 Score: 204.1 bits (518), Expect = 9.0e-49
Identity = 150/163 (92.02%), Postives = 154/163 (94.48%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDEDGDGDLSEGEGEEDLSSEDGDDD 62
DPLGAFLIKPGMKGDSPTQCPS PLDAE D DDDD+DGDGDLSEGEG+EDLSSEDG DD
Sbjct: 41 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGD-DDDDDDGDGDLSEGEGDEDLSSEDG-DD 100
Query: 63 YTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD 122
Y NN NDN+K NSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDD+DD
Sbjct: 101 YANNLNDNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDEDD 160
Query: 123 DG-DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
DG DDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 161 DGDDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 201
BLAST of Lsi01G007280 vs. NCBI nr
Match:
KAG7034174.1 (hypothetical protein SDJN02_03901, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 203.8 bits (517), Expect = 1.2e-48
Identity = 147/162 (90.74%), Postives = 154/162 (95.06%), Query Frame = 0
Query: 3 DPLGAFLIKPGMKGDSPTQCPSTTPLDAEEDGDDDDEDGDGDLSEGEGEEDLSSEDGDDD 62
DPLGAFLIKPGMKGDSPTQCPS PLDAE + DDDD+DGDGDLSEGEG+EDLSSEDG DD
Sbjct: 9 DPLGAFLIKPGMKGDSPTQCPSPPPLDAEGE-DDDDDDGDGDLSEGEGDEDLSSEDG-DD 68
Query: 63 YTNNFNDNNKGNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDDNDDGDDDDDDD 122
Y NN N+N+K NSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDD+NDDGDDDD+DD
Sbjct: 69 YANNLNNNSKSNSKKNPEGGAGGAEENGEEEEEFDGEEDQDDDGDDDDENDDGDDDDEDD 128
Query: 123 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 165
DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK
Sbjct: 129 DGDDDDDGGEDEDEVADEDEDEEEEDEDEDEEALQPPKKRKK 168
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1IJG0 | 8.8e-50 | 91.98 | prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111477... | [more] |
A0A6J1GGT6 | 4.4e-49 | 92.02 | prostatic spermine-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111453777... | [more] |
A0A6J1BSS9 | 2.2e-45 | 88.89 | phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Momordica charantia OX... | [more] |
A0A0A0KIZ3 | 3.6e-43 | 87.27 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501250 PE=4 SV=1 | [more] |
A0A6J1KLW4 | 1.5e-41 | 86.42 | phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucurbita maxima ... | [more] |
Match Name | E-value | Identity | Description | |
XP_038881735.1 | 8.7e-52 | 92.64 | nucleolin [Benincasa hispida] >XP_038881737.1 nucleolin [Benincasa hispida] | [more] |
XP_023543922.1 | 3.6e-50 | 92.59 | prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo] >XP_0235439... | [more] |
XP_022977276.1 | 1.8e-49 | 91.98 | prostatic spermine-binding protein-like [Cucurbita maxima] | [more] |
XP_022950769.1 | 9.0e-49 | 92.02 | prostatic spermine-binding protein [Cucurbita moschata] >XP_022950770.1 prostati... | [more] |
KAG7034174.1 | 1.2e-48 | 90.74 | hypothetical protein SDJN02_03901, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |