Lsi01G007240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G007240
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranslation initiation factor IF-2, putative isoform 1
Locationchr01: 5740196 .. 5742970 (-)
RNA-Seq ExpressionLsi01G007240
SyntenyLsi01G007240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAATTTGAAACGAGTATTTTTCCTCCGCCCAATCTTCTTCCCCACGTCTTAACATTGGTCCTCCGCAGGATCTGAAAAGGAGGAAAAAGGAAATTTCGCGGCAGTTCACCGGCGTAGTTTAATCCATTTATTCCCATCTCTGGCGGTTGCACGTCTTCAAGTTTTGGAAACCCACTGAGAACTTTAATTAATTTCACTGTGCACTACATTAGGGTTTGAAAGTCTTTATTGTCGTTTTCATTTATGAAAATCCAGTGACGAAGTGCGGATTCGTCTCAGAATGCTGCAACGTGAGTAGTCCATTAAAGTCAAGAAAGACTGGTTGCTGGGAATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGGTATGTTGAAATTCGTAGTGATTCCGATCCTTTTTCCCGAAGCCGGAATTTAAGTGAAGGAAAATTGTTTTTTTTTCCCCTCTTCCGGCGACTAATTGTCCGCGGATTTAACATAATTGTTCCGCTGCTTTCGCCTTCACTTGTGTTTAGTTGAACGGCATGCTGCTGCAATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGGTATCTGTAGATTTTGGATTTTGTTGCGCGTTCTGATTGGTAACTGCTCCCTTATATGACGTTTCTTTGCTGCAACTCATCTTCTTTCCTCTGCTGGTGGCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTAAGTAATTTTTCATTGTATATCTTAAATTGTATCGTAGTAGAACGATTGACACCTTGCGAGCTCACAAATATGATTTAGCTTGTCTATATCTTTTGTTTCATGTTGTTGATTTGTGGAAGAACGCTACTAGAAATATAACCGTGTACTATTTGGTGTTGACTTATATATTTATTGACAATTCTTGATTTTAGGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGCATCTTTATGGTTTTTGCACATCGATTACTGCATTAGCCTTTTCATGTTAATATCCCATAGTTGTCTGATATAGCCATTTTTTCAATATTTGGTGGTGTTTTTACTCAAAATCTCTGGGCACATAGACGGTCCGGGTCAAAGGAATAGAATTATTGTAGTGATAGTGTGTCTGCAATCAATTATTGATGTTTTGTTTTCAATAATTAAAGATGTTTTGTTTTAAACACTAAGGGTGTCTAAGCTTAGCTAACTTATGTATATAAACTAATTATTGACGACTATCTAGACTTTATTAGCTTGATCTTGAGCTTCAATAAGTTTGAATACATGACGTCTTGGTAATAAGTTGGGATCTTGTTGCTCACCATTGGTTAGGCTTAGTGGTTAATAAAGTCCAATGTAAATAGTGCAAACAACTTAAAGAGAATGAGTTCAACACATGGTGACCACCTCGCCTGCCAAAGATTTGATAACCTACGAGTTTTTTGACAACAAAATTAGGGTCACGGTTAGATGGTTTTTTTCGGTGAGGATGGTTGAGGCGCACAAGCTGACCTTATGAAGACTCCTTTGTATACGCATTGGTAAATTGAAATAAACTTTGTAACTAGTATTGGTTTGAACTTTGTTATCAAATAAGTATTGCTTTTACAATAGGATGCTGTTTGAAATTTGAAAATACTAGTTTTTGGTACATTGGATTGTAGTTTTGTTTTTTCCTCCCTCTTTTAGCGCTTCATTTTGGATTTTATTATTTCTACTCGAGTCTTCAGTAAATGTTCCTATGGATGTCAATACCATGATAAATGTTGTTCATTTATATATGTTCTCTGCCATCATCTATTGGTCAATATTATCAACTAGTAGAGAAATTAATTCCCGGGCTAAGTTGCAAAAAAGTTATTGGGAGGCATTAGTCGATCATTTATCATTAAAAGTATAATTTAGCGCGTCAAAAATAATCACTCAGTGTGACTAGATTGTAGAGGGAATGATGGAAGTGCTGGTTTCATTTCAAGTCATAATTACCATTATAACTATTACAGATATGGATAAAAATCATTTATTGACAGAAAAAGATCTAGAAAAAGCTAGGGAAATTCTTGACCCATGGAAGGAAGCTGCATAGATGAATTTTTCCAAGTACAAAAATCAGCATGGCTATTACTAAAAAAACATGTAAAGCTTACATTTTAGTAACATCTCAGGCTTGTTTGAGGAATTGTCTCAACAAAACTTTCTTAAGGCTGTTTTTCCTCTATTTAATGTATTCTACAATAAGCTAACGTTCTCGTTCCTTAGGTGAGTAACCAAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGTTCATTTAG

mRNA sequence

TTCAATTTGAAACGAGTATTTTTCCTCCGCCCAATCTTCTTCCCCACGTCTTAACATTGGTCCTCCGCAGGATCTGAAAAGGAGGAAAAAGGAAATTTCGCGGCAGTTCACCGGCGTAGTTTAATCCATTTATTCCCATCTCTGGCGGTTGCACGTCTTCAAGTTTTGGAAACCCACTGAGAACTTTAATTAATTTCACTGTGCACTACATTAGGGTTTGAAAGTCTTTATTGTCGTTTTCATTTATGAAAATCCAGTGACGAAGTGCGGATTCGTCTCAGAATGCTGCAACGTGAGTAGTCCATTAAAGTCAAGAAAGACTGGTTGCTGGGAATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGCATCTTTATGTTGTCTGATATAGCCATTTTTTCAATATTTGGTGGTGTTTTTACTCAAAATCTCTGGGCACATAGACGCGCTTCATTTTGGATTTTATTATTTCTACTCGAGTCTTCAGTAAATGTTCCTATGGATGTCAATACCATGATAAATGTGAGTAACCAAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGTTCATTTAG

Coding sequence (CDS)

ATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGCATCTTTATGTTGTCTGATATAGCCATTTTTTCAATATTTGGTGGTGTTTTTACTCAAAATCTCTGGGCACATAGACGCGCTTCATTTTGGATTTTATTATTTCTACTCGAGTCTTCAGTAAATGTTCCTATGGATGTCAATACCATGATAAATGTGAGTAACCAAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGTTCATTTAG

Protein sequence

MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINVSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI
Homology
BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match: A0A5A7SXV4 (Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002410 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 3.4e-102
Identity = 212/287 (73.87%), Postives = 218/287 (75.96%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELR 60
           MARRKAKKTVKKSS S  R AKDEAA      +DEDVERHAAAI AIRDVEIERLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
           SLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
           ILQTPG                                                     +
Sbjct: 181 ILQTPG-----------------------------------------------------I 234

Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI 282
           SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG+FI
Sbjct: 241 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGIFI 234

BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match: A0A0A0KK81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.2e-101
Identity = 210/277 (75.81%), Postives = 212/277 (76.53%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYF 60
           MARRKAKKTVKKSS SP+ EAKDEAANDEDVERHAAAI AIRDVEIERLIT LRLLRSYF
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIERLITVLRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 STAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPG 180
           S AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNFVLEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180

Query: 181 VRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINVSNQRLS 240
                                                                VSNQRLS
Sbjct: 181 -----------------------------------------------------VSNQRLS 224

Query: 241 FGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
            GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 241 IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 224

BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match: A0A0A0KRH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622550 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 6.4e-101
Identity = 209/283 (73.85%), Postives = 217/283 (76.68%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELR 60
           MARRKAKKTVKKSS S  R+AKDEA N      DEDVERHAAAI AIRDVEIERLIT LR
Sbjct: 3   MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSDEDVERHAAAIRAIRDVEIERLITVLR 62

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEV+WKDTEDELHTNPADG+DIHA
Sbjct: 63  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADGVDIHA 122

Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
           SLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSD++ LGMPD
Sbjct: 123 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMTLGMPD 182

Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
           I+QTPGVRIFM                                                +
Sbjct: 183 IVQTPGVRIFM------------------------------------------------I 237

Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
           SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 243 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 237

BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match: A0A1S4DWB9 (uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 4.2e-100
Identity = 209/283 (73.85%), Postives = 214/283 (75.62%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELR 60
           MARRKAKKTVKKSS S  R AKDEAA      +DEDVERHAAAI AIRDVEIERLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
           SLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
           ILQTPG                                                     +
Sbjct: 181 ILQTPG-----------------------------------------------------I 230

Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
           SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 241 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 230

BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match: A0A5D3CLG2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002490 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 5.4e-100
Identity = 208/277 (75.09%), Postives = 210/277 (75.81%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYF 60
           MARRKAKKTVKKS+ SPV EAKDE ANDEDVERHAAAI AIRDVEI RLITELRLLRSYF
Sbjct: 1   MARRKAKKTVKKSNPSPVLEAKDETANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 STAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPG 180
           S AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNF LEEPSDN+VLGMPDILQTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFDLEEPSDNMVLGMPDILQTPG 180

Query: 181 VRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINVSNQRLS 240
                                                                V NQRLS
Sbjct: 181 -----------------------------------------------------VINQRLS 224

Query: 241 FGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
            GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 241 IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 224

BLAST of Lsi01G007240 vs. NCBI nr
Match: KAG7034170.1 (hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.2 bits (1001), Expect = 1.5e-104
Identity = 216/289 (74.74%), Postives = 222/289 (76.82%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAAN------------DEDVERHAAAICAIRDVEIER 60
           MARRKAKK+VKKSS SPVREAKD +AN            DEDVERHA AI AIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNV 180
           GIDIHASLLHRLSTAYPN SAGMRSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDN+
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDV 240
           VLGMPD+LQTPGVRIFM                                           
Sbjct: 181 VLGMPDLLQTPGVRIFM------------------------------------------- 240

Query: 241 NTMINVSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
                VSNQRLS GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Sbjct: 241 -----VSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIH 241

BLAST of Lsi01G007240 vs. NCBI nr
Match: KAA0034696.1 (Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa] >TYK09247.1 Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 7.0e-102
Identity = 212/287 (73.87%), Postives = 218/287 (75.96%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELR 60
           MARRKAKKTVKKSS S  R AKDEAA      +DEDVERHAAAI AIRDVEIERLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
           SLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
           ILQTPG                                                     +
Sbjct: 181 ILQTPG-----------------------------------------------------I 234

Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI 282
           SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG+FI
Sbjct: 241 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGIFI 234

BLAST of Lsi01G007240 vs. NCBI nr
Match: KAG6604007.1 (hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379.0 bits (972), Expect = 3.5e-101
Identity = 210/289 (72.66%), Postives = 217/289 (75.09%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAAN------------DEDVERHAAAICAIRDVEIER 60
           MARRKAKK+VKKSS SP+REAKD +AN            DEDVERHA AI AIRDVEIER
Sbjct: 1   MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNV 180
           GIDIHASLLHRLSTAYPN SAGMRSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDN+
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDV 240
           VLGMPD+LQTPG                                                
Sbjct: 181 VLGMPDLLQTPG------------------------------------------------ 236

Query: 241 NTMINVSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
                VSNQRLS GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Sbjct: 241 -----VSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIH 236

BLAST of Lsi01G007240 vs. NCBI nr
Match: XP_004143493.2 (uncharacterized protein LOC101215210 [Cucumis sativus] >KAE8647570.1 hypothetical protein Csa_004420 [Cucumis sativus])

HSP 1 Score: 378.6 bits (971), Expect = 4.6e-101
Identity = 210/277 (75.81%), Postives = 212/277 (76.53%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYF 60
           MARRKAKKTVKKSS SP+ EAKDEAANDEDVERHAAAI AIRDVEI RLITELRLLRSYF
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 STAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPG 180
           S AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNFVLEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180

Query: 181 VRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINVSNQRLS 240
                                                                VSNQRLS
Sbjct: 181 -----------------------------------------------------VSNQRLS 224

Query: 241 FGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
            GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 241 IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 224

BLAST of Lsi01G007240 vs. NCBI nr
Match: XP_031741813.1 (uncharacterized protein LOC101204054 [Cucumis sativus] >KGN52240.1 hypothetical protein Csa_007879 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 1.3e-100
Identity = 209/283 (73.85%), Postives = 217/283 (76.68%), Query Frame = 0

Query: 1   MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELR 60
           MARRKAKKTVKKSS S  R+AKDEA N      DEDVERHAAAI AIRDVEIERLIT LR
Sbjct: 3   MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSDEDVERHAAAIRAIRDVEIERLITVLR 62

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEV+WKDTEDELHTNPADG+DIHA
Sbjct: 63  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADGVDIHA 122

Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
           SLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSD++ LGMPD
Sbjct: 123 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMTLGMPD 182

Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
           I+QTPGVRIFM                                                +
Sbjct: 183 IVQTPGVRIFM------------------------------------------------I 237

Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
           SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 243 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 237

BLAST of Lsi01G007240 vs. TAIR 10
Match: AT4G39630.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 175.3 bits (443), Expect = 7.1e-44
Identity = 120/285 (42.11%), Postives = 156/285 (54.74%), Query Frame = 0

Query: 1   MARRKAKKTVK-----KSSLSPVR-EAKDEAANDEDVERHAAAICAIRDVEIERLITELR 60
           M +RKAK+ VK     ++    +R E K E   DE+VER  AAI AIRDVEIE+++T LR
Sbjct: 1   MPKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYF +EQL TP+L FF+E LP LSISR  E GEIE++W+D   +      +G+D++ 
Sbjct: 61  LLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNY 120

Query: 121 SLLHRLSTAYPN-YSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMP 180
           S+L RLS  + + YS    S  G++    +VK N    +N Q+ N V +  S+N +L   
Sbjct: 121 SILKRLSMRFTDLYSRS--SLGGYDLPD-NVKANLLGTDNPQLDNLVFQGTSENQMLPGH 180

Query: 181 DILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMIN 240
           D  QTPG                                                     
Sbjct: 181 DAFQTPG----------------------------------------------------- 229

Query: 241 VSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIH 278
           V+ QRLSFGMTPKT RLPK GEM++S+HGSPLGVYKED NM AI+
Sbjct: 241 VNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAIN 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SXV43.4e-10273.87Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. maku... [more]
A0A0A0KK812.2e-10175.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1[more]
A0A0A0KRH46.4e-10173.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622550 PE=4 SV=1[more]
A0A1S4DWB94.2e-10073.85uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=... [more]
A0A5D3CLG25.4e-10075.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAG7034170.11.5e-10474.74hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0034696.17.0e-10273.87Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa... [more]
KAG6604007.13.5e-10172.66hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004143493.24.6e-10175.81uncharacterized protein LOC101215210 [Cucumis sativus] >KAE8647570.1 hypothetica... [more]
XP_031741813.11.3e-10073.85uncharacterized protein LOC101204054 [Cucumis sativus] >KGN52240.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
AT4G39630.17.1e-4442.11unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..29
NoneNo IPR availablePANTHERPTHR37248TRANSLATION INITIATION FACTORcoord: 233..278
coord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G007240.1Lsi01G007240.1mRNA