Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAATTTGAAACGAGTATTTTTCCTCCGCCCAATCTTCTTCCCCACGTCTTAACATTGGTCCTCCGCAGGATCTGAAAAGGAGGAAAAAGGAAATTTCGCGGCAGTTCACCGGCGTAGTTTAATCCATTTATTCCCATCTCTGGCGGTTGCACGTCTTCAAGTTTTGGAAACCCACTGAGAACTTTAATTAATTTCACTGTGCACTACATTAGGGTTTGAAAGTCTTTATTGTCGTTTTCATTTATGAAAATCCAGTGACGAAGTGCGGATTCGTCTCAGAATGCTGCAACGTGAGTAGTCCATTAAAGTCAAGAAAGACTGGTTGCTGGGAATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGGTATGTTGAAATTCGTAGTGATTCCGATCCTTTTTCCCGAAGCCGGAATTTAAGTGAAGGAAAATTGTTTTTTTTTCCCCTCTTCCGGCGACTAATTGTCCGCGGATTTAACATAATTGTTCCGCTGCTTTCGCCTTCACTTGTGTTTAGTTGAACGGCATGCTGCTGCAATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGGTATCTGTAGATTTTGGATTTTGTTGCGCGTTCTGATTGGTAACTGCTCCCTTATATGACGTTTCTTTGCTGCAACTCATCTTCTTTCCTCTGCTGGTGGCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTAAGTAATTTTTCATTGTATATCTTAAATTGTATCGTAGTAGAACGATTGACACCTTGCGAGCTCACAAATATGATTTAGCTTGTCTATATCTTTTGTTTCATGTTGTTGATTTGTGGAAGAACGCTACTAGAAATATAACCGTGTACTATTTGGTGTTGACTTATATATTTATTGACAATTCTTGATTTTAGGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGCATCTTTATGGTTTTTGCACATCGATTACTGCATTAGCCTTTTCATGTTAATATCCCATAGTTGTCTGATATAGCCATTTTTTCAATATTTGGTGGTGTTTTTACTCAAAATCTCTGGGCACATAGACGGTCCGGGTCAAAGGAATAGAATTATTGTAGTGATAGTGTGTCTGCAATCAATTATTGATGTTTTGTTTTCAATAATTAAAGATGTTTTGTTTTAAACACTAAGGGTGTCTAAGCTTAGCTAACTTATGTATATAAACTAATTATTGACGACTATCTAGACTTTATTAGCTTGATCTTGAGCTTCAATAAGTTTGAATACATGACGTCTTGGTAATAAGTTGGGATCTTGTTGCTCACCATTGGTTAGGCTTAGTGGTTAATAAAGTCCAATGTAAATAGTGCAAACAACTTAAAGAGAATGAGTTCAACACATGGTGACCACCTCGCCTGCCAAAGATTTGATAACCTACGAGTTTTTTGACAACAAAATTAGGGTCACGGTTAGATGGTTTTTTTCGGTGAGGATGGTTGAGGCGCACAAGCTGACCTTATGAAGACTCCTTTGTATACGCATTGGTAAATTGAAATAAACTTTGTAACTAGTATTGGTTTGAACTTTGTTATCAAATAAGTATTGCTTTTACAATAGGATGCTGTTTGAAATTTGAAAATACTAGTTTTTGGTACATTGGATTGTAGTTTTGTTTTTTCCTCCCTCTTTTAGCGCTTCATTTTGGATTTTATTATTTCTACTCGAGTCTTCAGTAAATGTTCCTATGGATGTCAATACCATGATAAATGTTGTTCATTTATATATGTTCTCTGCCATCATCTATTGGTCAATATTATCAACTAGTAGAGAAATTAATTCCCGGGCTAAGTTGCAAAAAAGTTATTGGGAGGCATTAGTCGATCATTTATCATTAAAAGTATAATTTAGCGCGTCAAAAATAATCACTCAGTGTGACTAGATTGTAGAGGGAATGATGGAAGTGCTGGTTTCATTTCAAGTCATAATTACCATTATAACTATTACAGATATGGATAAAAATCATTTATTGACAGAAAAAGATCTAGAAAAAGCTAGGGAAATTCTTGACCCATGGAAGGAAGCTGCATAGATGAATTTTTCCAAGTACAAAAATCAGCATGGCTATTACTAAAAAAACATGTAAAGCTTACATTTTAGTAACATCTCAGGCTTGTTTGAGGAATTGTCTCAACAAAACTTTCTTAAGGCTGTTTTTCCTCTATTTAATGTATTCTACAATAAGCTAACGTTCTCGTTCCTTAGGTGAGTAACCAAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGTTCATTTAG
mRNA sequence
TTCAATTTGAAACGAGTATTTTTCCTCCGCCCAATCTTCTTCCCCACGTCTTAACATTGGTCCTCCGCAGGATCTGAAAAGGAGGAAAAAGGAAATTTCGCGGCAGTTCACCGGCGTAGTTTAATCCATTTATTCCCATCTCTGGCGGTTGCACGTCTTCAAGTTTTGGAAACCCACTGAGAACTTTAATTAATTTCACTGTGCACTACATTAGGGTTTGAAAGTCTTTATTGTCGTTTTCATTTATGAAAATCCAGTGACGAAGTGCGGATTCGTCTCAGAATGCTGCAACGTGAGTAGTCCATTAAAGTCAAGAAAGACTGGTTGCTGGGAATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGCATCTTTATGTTGTCTGATATAGCCATTTTTTCAATATTTGGTGGTGTTTTTACTCAAAATCTCTGGGCACATAGACGCGCTTCATTTTGGATTTTATTATTTCTACTCGAGTCTTCAGTAAATGTTCCTATGGATGTCAATACCATGATAAATGTGAGTAACCAAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGTTCATTTAG
Coding sequence (CDS)
ATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGCATCTTTATGTTGTCTGATATAGCCATTTTTTCAATATTTGGTGGTGTTTTTACTCAAAATCTCTGGGCACATAGACGCGCTTCATTTTGGATTTTATTATTTCTACTCGAGTCTTCAGTAAATGTTCCTATGGATGTCAATACCATGATAAATGTGAGTAACCAAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGTTCATTTAG
Protein sequence
MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINVSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI
Homology
BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match:
A0A5A7SXV4 (Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002410 PE=4 SV=1)
HSP 1 Score: 381.3 bits (978), Expect = 3.4e-102
Identity = 212/287 (73.87%), Postives = 218/287 (75.96%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELR 60
MARRKAKKTVKKSS S R AKDEAA +DEDVERHAAAI AIRDVEIERLITELR
Sbjct: 1 MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60
Query: 61 LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61 LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120
Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
SLLHRLSTAYP SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180
Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
ILQTPG +
Sbjct: 181 ILQTPG-----------------------------------------------------I 234
Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI 282
SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG+FI
Sbjct: 241 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGIFI 234
BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match:
A0A0A0KK81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1)
HSP 1 Score: 378.6 bits (971), Expect = 2.2e-101
Identity = 210/277 (75.81%), Postives = 212/277 (76.53%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYF 60
MARRKAKKTVKKSS SP+ EAKDEAANDEDVERHAAAI AIRDVEIERLIT LRLLRSYF
Sbjct: 1 MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIERLITVLRLLRSYF 60
Query: 61 NKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRL 120
NKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHASLLHRL
Sbjct: 61 NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
Query: 121 STAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPG 180
S AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNFVLEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180
Query: 181 VRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINVSNQRLS 240
VSNQRLS
Sbjct: 181 -----------------------------------------------------VSNQRLS 224
Query: 241 FGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 241 IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 224
BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match:
A0A0A0KRH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622550 PE=4 SV=1)
HSP 1 Score: 377.1 bits (967), Expect = 6.4e-101
Identity = 209/283 (73.85%), Postives = 217/283 (76.68%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELR 60
MARRKAKKTVKKSS S R+AKDEA N DEDVERHAAAI AIRDVEIERLIT LR
Sbjct: 3 MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSDEDVERHAAAIRAIRDVEIERLITVLR 62
Query: 61 LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEV+WKDTEDELHTNPADG+DIHA
Sbjct: 63 LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADGVDIHA 122
Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
SLLHRLSTAYP SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSD++ LGMPD
Sbjct: 123 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMTLGMPD 182
Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
I+QTPGVRIFM +
Sbjct: 183 IVQTPGVRIFM------------------------------------------------I 237
Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 243 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 237
BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match:
A0A1S4DWB9 (uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=4 SV=1)
HSP 1 Score: 374.4 bits (960), Expect = 4.2e-100
Identity = 209/283 (73.85%), Postives = 214/283 (75.62%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELR 60
MARRKAKKTVKKSS S R AKDEAA +DEDVERHAAAI AIRDVEIERLITELR
Sbjct: 1 MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60
Query: 61 LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61 LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120
Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
SLLHRLSTAYP SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180
Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
ILQTPG +
Sbjct: 181 ILQTPG-----------------------------------------------------I 230
Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 241 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 230
BLAST of Lsi01G007240 vs. ExPASy TrEMBL
Match:
A0A5D3CLG2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002490 PE=4 SV=1)
HSP 1 Score: 374.0 bits (959), Expect = 5.4e-100
Identity = 208/277 (75.09%), Postives = 210/277 (75.81%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYF 60
MARRKAKKTVKKS+ SPV EAKDE ANDEDVERHAAAI AIRDVEI RLITELRLLRSYF
Sbjct: 1 MARRKAKKTVKKSNPSPVLEAKDETANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60
Query: 61 NKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRL 120
NKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHASLLHRL
Sbjct: 61 NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
Query: 121 STAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPG 180
S AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNF LEEPSDN+VLGMPDILQTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFDLEEPSDNMVLGMPDILQTPG 180
Query: 181 VRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINVSNQRLS 240
V NQRLS
Sbjct: 181 -----------------------------------------------------VINQRLS 224
Query: 241 FGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 241 IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 224
BLAST of Lsi01G007240 vs. NCBI nr
Match:
KAG7034170.1 (hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 390.2 bits (1001), Expect = 1.5e-104
Identity = 216/289 (74.74%), Postives = 222/289 (76.82%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAAN------------DEDVERHAAAICAIRDVEIER 60
MARRKAKK+VKKSS SPVREAKD +AN DEDVERHA AI AIRDVEIER
Sbjct: 1 MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
Query: 61 LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61 LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
Query: 121 GIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNV 180
GIDIHASLLHRLSTAYPN SAGMRSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDN+
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
Query: 181 VLGMPDILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDV 240
VLGMPD+LQTPGVRIFM
Sbjct: 181 VLGMPDLLQTPGVRIFM------------------------------------------- 240
Query: 241 NTMINVSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
VSNQRLS GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Sbjct: 241 -----VSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIH 241
BLAST of Lsi01G007240 vs. NCBI nr
Match:
KAA0034696.1 (Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa] >TYK09247.1 Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa])
HSP 1 Score: 381.3 bits (978), Expect = 7.0e-102
Identity = 212/287 (73.87%), Postives = 218/287 (75.96%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAA------NDEDVERHAAAICAIRDVEIERLITELR 60
MARRKAKKTVKKSS S R AKDEAA +DEDVERHAAAI AIRDVEIERLITELR
Sbjct: 1 MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60
Query: 61 LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61 LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120
Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
SLLHRLSTAYP SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180
Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
ILQTPG +
Sbjct: 181 ILQTPG-----------------------------------------------------I 234
Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI 282
SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG+FI
Sbjct: 241 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGIFI 234
BLAST of Lsi01G007240 vs. NCBI nr
Match:
KAG6604007.1 (hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 379.0 bits (972), Expect = 3.5e-101
Identity = 210/289 (72.66%), Postives = 217/289 (75.09%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAAN------------DEDVERHAAAICAIRDVEIER 60
MARRKAKK+VKKSS SP+REAKD +AN DEDVERHA AI AIRDVEIER
Sbjct: 1 MARRKAKKSVKKSSPSPIREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60
Query: 61 LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD
Sbjct: 61 LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120
Query: 121 GIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNV 180
GIDIHASLLHRLSTAYPN SAGMRSFNGFEFSSKSVKTNPFNVENLQIPNF LEEPSDN+
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180
Query: 181 VLGMPDILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDV 240
VLGMPD+LQTPG
Sbjct: 181 VLGMPDLLQTPG------------------------------------------------ 236
Query: 241 NTMINVSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
VSNQRLS GMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Sbjct: 241 -----VSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREDNMEAIH 236
BLAST of Lsi01G007240 vs. NCBI nr
Match:
XP_004143493.2 (uncharacterized protein LOC101215210 [Cucumis sativus] >KAE8647570.1 hypothetical protein Csa_004420 [Cucumis sativus])
HSP 1 Score: 378.6 bits (971), Expect = 4.6e-101
Identity = 210/277 (75.81%), Postives = 212/277 (76.53%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYF 60
MARRKAKKTVKKSS SP+ EAKDEAANDEDVERHAAAI AIRDVEI RLITELRLLRSYF
Sbjct: 1 MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60
Query: 61 NKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRL 120
NKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHASLLHRL
Sbjct: 61 NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
Query: 121 STAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPG 180
S AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNFVLEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180
Query: 181 VRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINVSNQRLS 240
VSNQRLS
Sbjct: 181 -----------------------------------------------------VSNQRLS 224
Query: 241 FGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 241 IGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 224
BLAST of Lsi01G007240 vs. NCBI nr
Match:
XP_031741813.1 (uncharacterized protein LOC101204054 [Cucumis sativus] >KGN52240.1 hypothetical protein Csa_007879 [Cucumis sativus])
HSP 1 Score: 377.1 bits (967), Expect = 1.3e-100
Identity = 209/283 (73.85%), Postives = 217/283 (76.68%), Query Frame = 0
Query: 1 MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELR 60
MARRKAKKTVKKSS S R+AKDEA N DEDVERHAAAI AIRDVEIERLIT LR
Sbjct: 3 MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSDEDVERHAAAIRAIRDVEIERLITVLR 62
Query: 61 LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEV+WKDTEDELHTNPADG+DIHA
Sbjct: 63 LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADGVDIHA 122
Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
SLLHRLSTAYP SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSD++ LGMPD
Sbjct: 123 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMTLGMPD 182
Query: 181 ILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINV 240
I+QTPGVRIFM +
Sbjct: 183 IVQTPGVRIFM------------------------------------------------I 237
Query: 241 SNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 278
SNQRLS GMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Sbjct: 243 SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH 237
BLAST of Lsi01G007240 vs. TAIR 10
Match:
AT4G39630.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 175.3 bits (443), Expect = 7.1e-44
Identity = 120/285 (42.11%), Postives = 156/285 (54.74%), Query Frame = 0
Query: 1 MARRKAKKTVK-----KSSLSPVR-EAKDEAANDEDVERHAAAICAIRDVEIERLITELR 60
M +RKAK+ VK ++ +R E K E DE+VER AAI AIRDVEIE+++T LR
Sbjct: 1 MPKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALR 60
Query: 61 LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
LLRSYF +EQL TP+L FF+E LP LSISR E GEIE++W+D + +G+D++
Sbjct: 61 LLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNY 120
Query: 121 SLLHRLSTAYPN-YSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMP 180
S+L RLS + + YS S G++ +VK N +N Q+ N V + S+N +L
Sbjct: 121 SILKRLSMRFTDLYSRS--SLGGYDLPD-NVKANLLGTDNPQLDNLVFQGTSENQMLPGH 180
Query: 181 DILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMIN 240
D QTPG
Sbjct: 181 DAFQTPG----------------------------------------------------- 229
Query: 241 VSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIH 278
V+ QRLSFGMTPKT RLPK GEM++S+HGSPLGVYKED NM AI+
Sbjct: 241 VNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAIN 229
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SXV4 | 3.4e-102 | 73.87 | Translation initiation factor IF-2, putative isoform 1 OS=Cucumis melo var. maku... | [more] |
A0A0A0KK81 | 2.2e-101 | 75.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1 | [more] |
A0A0A0KRH4 | 6.4e-101 | 73.85 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622550 PE=4 SV=1 | [more] |
A0A1S4DWB9 | 4.2e-100 | 73.85 | uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=... | [more] |
A0A5D3CLG2 | 5.4e-100 | 75.09 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAG7034170.1 | 1.5e-104 | 74.74 | hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAA0034696.1 | 7.0e-102 | 73.87 | Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa... | [more] |
KAG6604007.1 | 3.5e-101 | 72.66 | hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_004143493.2 | 4.6e-101 | 75.81 | uncharacterized protein LOC101215210 [Cucumis sativus] >KAE8647570.1 hypothetica... | [more] |
XP_031741813.1 | 1.3e-100 | 73.85 | uncharacterized protein LOC101204054 [Cucumis sativus] >KGN52240.1 hypothetical ... | [more] |
Match Name | E-value | Identity | Description | |
AT4G39630.1 | 7.1e-44 | 42.11 | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... | [more] |