Lsi01G006610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G006610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr01: 5320718 .. 5321416 (-)
RNA-Seq Expression	Lsi01G006610
Synteny	Lsi01G006610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACAGAGGAAGTTAAAGCAATGGGAGTCTATAATCTTCTTCAAATCATGGTGAAATTTTTTCGATTCACAGAGGTTTTTGTGGCAATGGGTTTTCTCTTCTGGACATTTAGCCGTCTCCCTTTGGTCTTGAGAGTTTCGAGCGATTACATTTCTCAAATCTCCAACTATTTTACAAGCCCTGTTTTCGGCTTCATACTCTGTAACACCATCATCGTTGCTCTAATTACCAAACCCCACTACTTCTCCGGCGGAAAAATAAGCAGTGACAATGTCGAAACCGAGCTTTTAAACGAACTGGTAAAAGACGGCGCCGTTGGGTCTCTGTCTTTCCCTGAGAGTGAGCCAATTGGGAGGCTCTGCTCTAATCCAGAGCAAGAGGAGATCGCCTACGAAGACAAGGAGGTAATTTCTGAGGTGAGATCGATGCGGGCGGCGGTCTTTACCGAAAAAATGGACGATTTTGGTTCGGAATCGGAGAAATTGAAGCTAGCATGGACAGAATTCGGTGGAGGAGAGTTCCGACGGCTAGAAGCAGAGGAGGAAGTGATTTGGGGAGGTGGGGTTTCGCCGGAAAGTGTACGGCACGGGGAGGAGCTGAGCAATAAGGAGTTTCAGCGAAGGATCGACGCGTTCATTGCAAGAGAGTTGAGGTTTCGCTGGGAAGAATCCGGCGCCGTCGTCCTCCGAAGTTAA

mRNA sequence

ATGAAAACAGAGGAAGTTAAAGCAATGGGAGTCTATAATCTTCTTCAAATCATGGTGAAATTTTTTCGATTCACAGAGGTTTTTGTGGCAATGGGTTTTCTCTTCTGGACATTTAGCCGTCTCCCTTTGGTCTTGAGAGTTTCGAGCGATTACATTTCTCAAATCTCCAACTATTTTACAAGCCCTGTTTTCGGCTTCATACTCTGTAACACCATCATCGTTGCTCTAATTACCAAACCCCACTACTTCTCCGGCGGAAAAATAAGCAGTGACAATGTCGAAACCGAGCTTTTAAACGAACTGGTAAAAGACGGCGCCGTTGGGTCTCTGTCTTTCCCTGAGAGTGAGCCAATTGGGAGGCTCTGCTCTAATCCAGAGCAAGAGGAGATCGCCTACGAAGACAAGGAGGTAATTTCTGAGGTGAGATCGATGCGGGCGGCGGTCTTTACCGAAAAAATGGACGATTTTGGTTCGGAATCGGAGAAATTGAAGCTAGCATGGACAGAATTCGGTGGAGGAGAGTTCCGACGGCTAGAAGCAGAGGAGGAAGTGATTTGGGGAGGTGGGGTTTCGCCGGAAAGTGTACGGCACGGGGAGGAGCTGAGCAATAAGGAGTTTCAGCGAAGGATCGACGCGTTCATTGCAAGAGAGTTGAGGTTTCGCTGGGAAGAATCCGGCGCCGTCGTCCTCCGAAGTTAA

Coding sequence (CDS)

ATGAAAACAGAGGAAGTTAAAGCAATGGGAGTCTATAATCTTCTTCAAATCATGGTGAAATTTTTTCGATTCACAGAGGTTTTTGTGGCAATGGGTTTTCTCTTCTGGACATTTAGCCGTCTCCCTTTGGTCTTGAGAGTTTCGAGCGATTACATTTCTCAAATCTCCAACTATTTTACAAGCCCTGTTTTCGGCTTCATACTCTGTAACACCATCATCGTTGCTCTAATTACCAAACCCCACTACTTCTCCGGCGGAAAAATAAGCAGTGACAATGTCGAAACCGAGCTTTTAAACGAACTGGTAAAAGACGGCGCCGTTGGGTCTCTGTCTTTCCCTGAGAGTGAGCCAATTGGGAGGCTCTGCTCTAATCCAGAGCAAGAGGAGATCGCCTACGAAGACAAGGAGGTAATTTCTGAGGTGAGATCGATGCGGGCGGCGGTCTTTACCGAAAAAATGGACGATTTTGGTTCGGAATCGGAGAAATTGAAGCTAGCATGGACAGAATTCGGTGGAGGAGAGTTCCGACGGCTAGAAGCAGAGGAGGAAGTGATTTGGGGAGGTGGGGTTTCGCCGGAAAGTGTACGGCACGGGGAGGAGCTGAGCAATAAGGAGTTTCAGCGAAGGATCGACGCGTTCATTGCAAGAGAGTTGAGGTTTCGCTGGGAAGAATCCGGCGCCGTCGTCCTCCGAAGTTAA

Protein sequence

MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFTSPVFGFILCNTIIVALITKPHYFSGGKISSDNVETELLNELVKDGAVGSLSFPESEPIGRLCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLEAEEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVLRS

Homology

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BLAST of Lsi01G006610 vs. ExPASy TrEMBL
Match: A0A5A7SYQ4 (Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001910 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.2e-98
Identity = 194/233 (83.26%), Postives = 205/233 (87.98%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKTE VKAMGVYNLLQ MVK FRFTEV  AMGFL WTFSRLPLVL+VSSD+ISQISNYFT
Sbjct: 1   MKTEGVKAMGVYNLLQSMVKIFRFTEVLGAMGFLIWTFSRLPLVLKVSSDFISQISNYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSDN-VETELLNELVKDGAVGSLSFPESEPIG 120
           SPVFGFILCN IIV+LI KPH FSGGKI+ DN VETEL NELV+DGAV SLS   SEP G
Sbjct: 61  SPVFGFILCNIIIVSLIAKPHNFSGGKINGDNDVETELFNELVEDGAVTSLSLAGSEPNG 120

Query: 121 RLCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLE 180
           RLCS+ EQE+IAYEDKEVISEV S RAAVFTEKM++FG ESEKLKL WTEFGGGE RRL+
Sbjct: 121 RLCSDTEQEKIAYEDKEVISEVTSTRAAVFTEKMENFGLESEKLKLVWTEFGGGELRRLK 180

Query: 181 AEEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVLRS 233
           AEEE IWGGGVSPE V + EELSN EFQRRIDAFIARELRFRWEESGAVVLRS
Sbjct: 181 AEEEAIWGGGVSPERVGNREELSNMEFQRRIDAFIARELRFRWEESGAVVLRS 233

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BLAST of Lsi01G006610 vs. ExPASy TrEMBL
Match: A0A1S3B3G2 (uncharacterized protein LOC103485351 OS=Cucumis melo OX=3656 GN=LOC103485351 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.2e-98
Identity = 194/233 (83.26%), Postives = 205/233 (87.98%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKTE VKAMGVYNLLQ MVK FRFTEV  AMGFL WTFSRLPLVL+VSSD+ISQISNYFT
Sbjct: 1   MKTEGVKAMGVYNLLQSMVKIFRFTEVLGAMGFLIWTFSRLPLVLKVSSDFISQISNYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSDN-VETELLNELVKDGAVGSLSFPESEPIG 120
           SPVFGFILCN IIV+LI KPH FSGGKI+ DN VETEL NELV+DGAV SLS   SEP G
Sbjct: 61  SPVFGFILCNIIIVSLIAKPHNFSGGKINGDNDVETELFNELVEDGAVTSLSLAGSEPNG 120

Query: 121 RLCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLE 180
           RLCS+ EQE+IAYEDKEVISEV S RAAVFTEKM++FG ESEKLKL WTEFGGGE RRL+
Sbjct: 121 RLCSDTEQEKIAYEDKEVISEVTSTRAAVFTEKMENFGLESEKLKLVWTEFGGGELRRLK 180

Query: 181 AEEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVLRS 233
           AEEE IWGGGVSPE V + EELSN EFQRRIDAFIARELRFRWEESGAVVLRS
Sbjct: 181 AEEEAIWGGGVSPERVGNREELSNMEFQRRIDAFIARELRFRWEESGAVVLRS 233

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BLAST of Lsi01G006610 vs. ExPASy TrEMBL
Match: A0A0A0KM84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502870 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 5.1e-96
Identity = 190/233 (81.55%), Postives = 204/233 (87.55%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKT EVKAMGVY LLQIMVK FRFTEV VAMGFL WTFSRLPLVLRVSSD+ISQISNYFT
Sbjct: 1   MKTVEVKAMGVYKLLQIMVKIFRFTEVLVAMGFLIWTFSRLPLVLRVSSDFISQISNYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSD-NVETELLNELVKDGAVGSLSFPESEPIG 120
           SPVFGFILCN IIV+LI KPH FS GKI+SD NVET L NELV+DGAV SLS   SEP G
Sbjct: 61  SPVFGFILCNIIIVSLIAKPHNFSCGKINSDKNVETVLFNELVEDGAVTSLSLAGSEPNG 120

Query: 121 RLCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLE 180
           RLCS+ EQEEIAYEDKEVISEV S + AVF+EKM+DFG ESEKLKL W E+GGGE RR++
Sbjct: 121 RLCSDTEQEEIAYEDKEVISEVTSTQTAVFSEKMEDFGLESEKLKLLWREYGGGELRRVK 180

Query: 181 AEEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVLRS 233
           AEEE IWGGGVS E V +GEELSNKEF+RRIDAFIARELRFRWEESGAVVLR+
Sbjct: 181 AEEEAIWGGGVSREGVGNGEELSNKEFERRIDAFIARELRFRWEESGAVVLRN 233

[Close]

BLAST of Lsi01G006610 vs. ExPASy TrEMBL
Match: A0A6J1IPH9 (uncharacterized protein LOC111477644 OS=Cucurbita maxima OX=3661 GN=LOC111477644 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.7e-94
Identity = 181/230 (78.70%), Postives = 199/230 (86.52%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKTEEV+AMG+ + L+ ++KFFRFTEVF AM  L WTFSRLPL+LRVSSDYISQIS YFT
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFFRFTEVFAAMALLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSDNVETELLNELVKDGAVGSLSFPESEPIGR 120
           SPVFGF+LCNTII+ALI KPH FSG K + DNVETEL+NELVKDGA+ SLS P SEP GR
Sbjct: 61  SPVFGFMLCNTIIIALIAKPHRFSGEKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120

Query: 121 LCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLEA 180
           LCS+ E EEIAYEDKEVISEV S  AA FTE+++DF S SEKLKLAW+EFGGGEF R E 
Sbjct: 121 LCSDVELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFERAEV 180

Query: 181 EEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVL 231
           EEE IWGGGV PESVR GEELSNKEF+RRIDAFIARELRFRWEESGAVVL
Sbjct: 181 EEEAIWGGGVLPESVRQGEELSNKEFERRIDAFIARELRFRWEESGAVVL 230

[Close]

BLAST of Lsi01G006610 vs. ExPASy TrEMBL
Match: A0A6J1GFJ2 (uncharacterized protein LOC111453461 OS=Cucurbita moschata OX=3662 GN=LOC111453461 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 1.0e-91
Identity = 179/230 (77.83%), Postives = 197/230 (85.65%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKTEEV+AMG+ + L+ ++KF RFTEVF AM FL WTFSRLPL+LRVSSDYISQIS YFT
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFLRFTEVFAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSDNVETELLNELVKDGAVGSLSFPESEPIGR 120
           SPVFGF+LCNTII+ALI KP  FSGGK + DNVETEL+NELVKDGA+ SLS P S P GR
Sbjct: 61  SPVFGFMLCNTIIIALIAKPPRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSGPNGR 120

Query: 121 LCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLEA 180
           LCS+ E EEIAYEDKEVISEV S  AA FTE+++DF S SEKLKLAW+EFGGGEF R E 
Sbjct: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFCSGSEKLKLAWSEFGGGEFGRAEV 180

Query: 181 EEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVL 231
           E E IWGGGV PESVR GEELSNKEF+RRIDAFIARELRFRWEESGAVVL
Sbjct: 181 EAEAIWGGGVLPESVRQGEELSNKEFERRIDAFIARELRFRWEESGAVVL 230

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BLAST of Lsi01G006610 vs. NCBI nr
Match: XP_038882287.1 (uncharacterized protein LOC120073519 [Benincasa hispida])

HSP 1 Score: 400.6 bits (1028), Expect = 9.3e-108
Identity = 208/232 (89.66%), Postives = 213/232 (91.81%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKTE+VKAMGVYNLLQIMVK FRFTEV VAMGFLFWTFSRLPLVLRVS DYISQISNYFT
Sbjct: 1   MKTEKVKAMGVYNLLQIMVKIFRFTEVLVAMGFLFWTFSRLPLVLRVSKDYISQISNYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSDNVETELLNELVKDGAVGSLSFPESEPIGR 120
            PVFGFILCNTIIVALI KPH FSGGKISSDNVETEL NELVKDGA  SLS P SEPIGR
Sbjct: 61  GPVFGFILCNTIIVALIAKPH-FSGGKISSDNVETELFNELVKDGADRSLSLPGSEPIGR 120

Query: 121 LCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLEA 180
           LCS+  QEEIAYEDKEVISEVRSM+AA+FTEK DDFGSESEKLKLAW EF GGEFRRLEA
Sbjct: 121 LCSDSGQEEIAYEDKEVISEVRSMKAAIFTEKRDDFGSESEKLKLAWMEFSGGEFRRLEA 180

Query: 181 EEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVLRS 233
           EEE IWGGG SPESV HGEELSNKEFQRRIDAFIARELRFRWEESGAV+LRS
Sbjct: 181 EEEAIWGGGFSPESVWHGEELSNKEFQRRIDAFIARELRFRWEESGAVILRS 231

[Close]

BLAST of Lsi01G006610 vs. NCBI nr
Match: XP_008441123.1 (PREDICTED: uncharacterized protein LOC103485351 [Cucumis melo] >KAA0036210.1 putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 [Cucumis melo var. makuwa] >TYK12605.1 putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 8.7e-98
Identity = 194/233 (83.26%), Postives = 205/233 (87.98%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKTE VKAMGVYNLLQ MVK FRFTEV  AMGFL WTFSRLPLVL+VSSD+ISQISNYFT
Sbjct: 1   MKTEGVKAMGVYNLLQSMVKIFRFTEVLGAMGFLIWTFSRLPLVLKVSSDFISQISNYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSDN-VETELLNELVKDGAVGSLSFPESEPIG 120
           SPVFGFILCN IIV+LI KPH FSGGKI+ DN VETEL NELV+DGAV SLS   SEP G
Sbjct: 61  SPVFGFILCNIIIVSLIAKPHNFSGGKINGDNDVETELFNELVEDGAVTSLSLAGSEPNG 120

Query: 121 RLCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLE 180
           RLCS+ EQE+IAYEDKEVISEV S RAAVFTEKM++FG ESEKLKL WTEFGGGE RRL+
Sbjct: 121 RLCSDTEQEKIAYEDKEVISEVTSTRAAVFTEKMENFGLESEKLKLVWTEFGGGELRRLK 180

Query: 181 AEEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVLRS 233
           AEEE IWGGGVSPE V + EELSN EFQRRIDAFIARELRFRWEESGAVVLRS
Sbjct: 181 AEEEAIWGGGVSPERVGNREELSNMEFQRRIDAFIARELRFRWEESGAVVLRS 233

[Close]

BLAST of Lsi01G006610 vs. NCBI nr
Match: XP_011658494.1 (uncharacterized protein LOC105436032 [Cucumis sativus] >KGN48851.1 hypothetical protein Csa_002710 [Cucumis sativus])

HSP 1 Score: 360.5 bits (924), Expect = 1.1e-95
Identity = 190/233 (81.55%), Postives = 204/233 (87.55%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKT EVKAMGVY LLQIMVK FRFTEV VAMGFL WTFSRLPLVLRVSSD+ISQISNYFT
Sbjct: 1   MKTVEVKAMGVYKLLQIMVKIFRFTEVLVAMGFLIWTFSRLPLVLRVSSDFISQISNYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSD-NVETELLNELVKDGAVGSLSFPESEPIG 120
           SPVFGFILCN IIV+LI KPH FS GKI+SD NVET L NELV+DGAV SLS   SEP G
Sbjct: 61  SPVFGFILCNIIIVSLIAKPHNFSCGKINSDKNVETVLFNELVEDGAVTSLSLAGSEPNG 120

Query: 121 RLCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLE 180
           RLCS+ EQEEIAYEDKEVISEV S + AVF+EKM+DFG ESEKLKL W E+GGGE RR++
Sbjct: 121 RLCSDTEQEEIAYEDKEVISEVTSTQTAVFSEKMEDFGLESEKLKLLWREYGGGELRRVK 180

Query: 181 AEEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVLRS 233
           AEEE IWGGGVS E V +GEELSNKEF+RRIDAFIARELRFRWEESGAVVLR+
Sbjct: 181 AEEEAIWGGGVSREGVGNGEELSNKEFERRIDAFIARELRFRWEESGAVVLRN 233

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BLAST of Lsi01G006610 vs. NCBI nr
Match: KAG6603959.1 (hypothetical protein SDJN03_04568, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 356.3 bits (913), Expect = 2.0e-94
Identity = 181/230 (78.70%), Postives = 201/230 (87.39%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKTEEV+AMG+ + L+ ++KFFR TEVF AM FL WTFSRLPL+LRVSSDYISQIS YFT
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFFRLTEVFAAMAFLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSDNVETELLNELVKDGAVGSLSFPESEPIGR 120
           SP+FGF+LCNTII+ALI+KPH FSGGK + DNVETEL+NELVKDGA+ SLS P SEP GR
Sbjct: 61  SPIFGFMLCNTIIIALISKPHRFSGGKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120

Query: 121 LCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLEA 180
           LCS+ E EEIAYEDKEVISEV S  AA FTE+++DF S SEKLKLAW+EFGGGEF R E 
Sbjct: 121 LCSDLELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFGRAEV 180

Query: 181 EEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVL 231
           EEE IWGGGV PESVR GEELSNKEF+RRIDAFIARELRFRWEESGAVVL
Sbjct: 181 EEEAIWGGGVLPESVRQGEELSNKEFERRIDAFIARELRFRWEESGAVVL 230

[Close]

BLAST of Lsi01G006610 vs. NCBI nr
Match: XP_022977278.1 (uncharacterized protein LOC111477644 [Cucurbita maxima])

HSP 1 Score: 354.4 bits (908), Expect = 7.6e-94
Identity = 181/230 (78.70%), Postives = 199/230 (86.52%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           MKTEEV+AMG+ + L+ ++KFFRFTEVF AM  L WTFSRLPL+LRVSSDYISQIS YFT
Sbjct: 1   MKTEEVEAMGLSDHLRTLLKFFRFTEVFAAMALLVWTFSRLPLILRVSSDYISQISGYFT 60

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSDNVETELLNELVKDGAVGSLSFPESEPIGR 120
           SPVFGF+LCNTII+ALI KPH FSG K + DNVETEL+NELVKDGA+ SLS P SEP GR
Sbjct: 61  SPVFGFMLCNTIIIALIAKPHRFSGEKFTGDNVETELVNELVKDGALTSLSLPGSEPNGR 120

Query: 121 LCSNPEQEEIAYEDKEVISEVRSMRAAVFTEKMDDFGSESEKLKLAWTEFGGGEFRRLEA 180
           LCS+ E EEIAYEDKEVISEV S  AA FTE+++DF S SEKLKLAW+EFGGGEF R E 
Sbjct: 121 LCSDVELEEIAYEDKEVISEVSSTTAAAFTEEIEDFSSGSEKLKLAWSEFGGGEFERAEV 180

Query: 181 EEEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIARELRFRWEESGAVVL 231
           EEE IWGGGV PESVR GEELSNKEF+RRIDAFIARELRFRWEESGAVVL
Sbjct: 181 EEEAIWGGGVLPESVRQGEELSNKEFERRIDAFIARELRFRWEESGAVVL 230

[Close]

BLAST of Lsi01G006610 vs. TAIR 10
Match: AT5G66440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-18
Identity = 78/254 (30.71%), Postives = 131/254 (51.57%), Query Frame = 0


Query: 1   MKTEEVKAMGVYNLLQIMVKFFRFTEVFVAMGFLFWTFSRLPLVLRVSSDYISQISNYFT 60
           +K E+ KA+  +N    + +FFR  EV VA+ F+FWTFS+LP V+++S  ++ +I+   +
Sbjct: 9   VKAEKAKALRRFNRFCRIGRFFRAAEVCVALLFIFWTFSQLPFVVQISGAFLRRIAAVIS 68

Query: 61  SPVFGFILCNTIIVALITKPHYFSGGKISSDNVETELLNELVKDGAVGSLSFPESEPIGR 120
           +P+F F+L N+I+V L+TK    +   ++S   ETE+    V+  +V + S P  E +  
Sbjct: 69  TPLFVFLLGNSIVVVLLTKSSDQTTTAVAS--AETEIYQAFVR--SVENRSKPSDEDL-- 128

Query: 121 LCSNPEQEEIAYEDKEVI-SEVRSMRAAVFTEKM------DDFGSESEKLKLAWTEFGGG 180
                  E I Y+DK+VI +++ S       E M       D    S+    + ++  G 
Sbjct: 129 ------TEGIVYDDKQVIVTDLDSNPNLTVDENMPHVEIDSDSSPHSKVYGRSKSDVSGK 188

Query: 181 E------------FRRLEAE---EEVIWGGGVSPESVRHGEELSNKEFQRRIDAFIAREL 233
           +             +R E E   +E         E     ++LSN+EFQ+ I+AFIA++ 
Sbjct: 189 QSSNMVMMMMKRSLQRSETEKFCKETENDDDSEEEKNYPEDDLSNEEFQKTIEAFIAKQR 248

The following BLAST results are available for this feature:

BLAST of Lsi01G006610 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G006610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYQ4	4.2e-98	83.26	Putative TRNA--methyltransferase non-catalytic subunit trm6MTase subunit trm6 OS...	[more]
A0A1S3B3G2	4.2e-98	83.26	uncharacterized protein LOC103485351 OS=Cucumis melo OX=3656 GN=LOC103485351 PE=...	[more]
A0A0A0KM84	5.1e-96	81.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502870 PE=4 SV=1	[more]
A0A6J1IPH9	3.7e-94	78.70	uncharacterized protein LOC111477644 OS=Cucurbita maxima OX=3661 GN=LOC111477644...	[more]
A0A6J1GFJ2	1.0e-91	77.83	uncharacterized protein LOC111453461 OS=Cucurbita moschata OX=3662 GN=LOC1114534...	[more]

BLAST of Lsi01G006610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882287.1	9.3e-108	89.66	uncharacterized protein LOC120073519 [Benincasa hispida]	[more]
XP_008441123.1	8.7e-98	83.26	PREDICTED: uncharacterized protein LOC103485351 [Cucumis melo] >KAA0036210.1 put...	[more]
XP_011658494.1	1.1e-95	81.55	uncharacterized protein LOC105436032 [Cucumis sativus] >KGN48851.1 hypothetical ...	[more]
KAG6603959.1	2.0e-94	78.70	hypothetical protein SDJN03_04568, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022977278.1	7.6e-94	78.70	uncharacterized protein LOC111477644 [Cucurbita maxima]	[more]

BLAST of Lsi01G006610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66440.1	3.3e-18	30.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33640	TRANSMEMBRANE PROTEIN	coord: 2..231
None	No IPR available	PANTHER	PTHR33640:SF3	TRNA-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6MTASE SUBUNIT	coord: 2..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G006610.1	Lsi01G006610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane