Lsi01G006280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G006280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Oxidoreductase-like domain-containing protein
Location	chr01: 5053547 .. 5053855 (+)
RNA-Seq Expression	Lsi01G006280
Synteny	Lsi01G006280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACGAGTCCCTGCAAAAATAATTCCCAATTTCCAATCATCAAGAATTTGCCCTAATTCGATCATGGCTAGTGAGGGAAACAGAGAAATGCAATCATCAGTTGATTCGAAGAAGAAAGGCGTGGAGGAGAAAGAAGAGAAACAGAAAGAGACAGAGAAGAGCGTGAAATTGCCACCGCCGCCGGAGAAGCCATTGCCAGGGGATTGTTGTGGGAGTGGATGCGTTCGATGTGTGTGGGATGTATATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTTCGGCGCCCAATTCTTGA

mRNA sequence

ATGAGACGAGTCCCTGCAAAAATAATTCCCAATTTCCAATCATCAAGAATTTGCCCTAATTCGATCATGGCTAGTGAGGGAAACAGAGAAATGCAATCATCAGTTGATTCGAAGAAGAAAGGCGTGGAGGAGAAAGAAGAGAAACAGAAAGAGACAGAGAAGAGCGTGAAATTGCCACCGCCGCCGGAGAAGCCATTGCCAGGGGATTGTTGTGGGAGTGGATGCGTTCGATGTGTGTGGGATGTATATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTTCGGCGCCCAATTCTTGA

Coding sequence (CDS)

ATGAGACGAGTCCCTGCAAAAATAATTCCCAATTTCCAATCATCAAGAATTTGCCCTAATTCGATCATGGCTAGTGAGGGAAACAGAGAAATGCAATCATCAGTTGATTCGAAGAAGAAAGGCGTGGAGGAGAAAGAAGAGAAACAGAAAGAGACAGAGAAGAGCGTGAAATTGCCACCGCCGCCGGAGAAGCCATTGCCAGGGGATTGTTGTGGGAGTGGATGCGTTCGATGTGTGTGGGATGTATATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTTCGGCGCCCAATTCTTGA

Protein sequence

MRRVPAKIIPNFQSSRICPNSIMASEGNREMQSSVDSKKKGVEEKEEKQKETEKSVKLPPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAPNS

Homology

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BLAST of Lsi01G006280 vs. ExPASy Swiss-Prot
Match: Q9USH2 (UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCP31B10.02 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 56 VKLPPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEK 97
          +++PP PE+PL  +CC SGC  CVWDVY ++LE+YN+   K
Sbjct: 52 IRVPPKPEEPL--NCCQSGCAICVWDVYADDLEEYNRARRK 90

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BLAST of Lsi01G006280 vs. ExPASy Swiss-Prot
Match: B1AS42 (NADH-cytochrome b5 reductase-like OS=Mus musculus OX=10090 GN=Cyb5rl PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 47 EKQKETEKSVKLPPPPEKPLPGDCCGSGCVRCVWDVYYEELE 89
          E ++E +    L   P +PLP  CCGSGC  CV+D+YY +LE
Sbjct: 3  ETEEEEDSEAWLRLKPVEPLPSQCCGSGCSPCVFDLYYRDLE 44

[Close]

BLAST of Lsi01G006280 vs. ExPASy TrEMBL
Match: A0A6J1KP06 (uncharacterized protein LOC111497385 OS=Cucurbita maxima OX=3661 GN=LOC111497385 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   MRRVPAKIIPNFQSSRICPNSIMASEGNREMQSSVDSKKKGVEEKEEKQKETEKSVKLPP 60
           MRR PAKIIPNFQSS + P SIMAS+G RE Q SVD ++ GVEEKE  +KETEK+VKLPP
Sbjct: 42  MRRFPAKIIPNFQSSSVYPKSIMASDGARETQ-SVDLQRTGVEEKE--KKETEKAVKLPP 101

Query: 61  PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAPNS 103
           PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSA NS
Sbjct: 102 PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSASNS 140

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BLAST of Lsi01G006280 vs. ExPASy TrEMBL
Match: A0A6J1BUD5 (uncharacterized protein LOC111005446 OS=Momordica charantia OX=3673 GN=LOC111005446 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.0e-37
Identity = 82/102 (80.39%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   MRRVPAKIIPNFQSSRICPNSIMASEGNREMQSSVDSKKKG--VEEKEEKQKETEKSVKL 60
           MRRVPAKIIPN QSS + P SIMASEG RE   SV+S+KKG  VEEKE+K+KE EK++KL
Sbjct: 38  MRRVPAKIIPNLQSSSVYPKSIMASEGTRE-NLSVESQKKGVDVEEKEDKEKEKEKTLKL 97

Query: 61  PPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAP 101
           PPPPEKPLPGDCCGSGCVRCVWDVYYEELE YNKLC+KGSAP
Sbjct: 98  PPPPEKPLPGDCCGSGCVRCVWDVYYEELEAYNKLCDKGSAP 138

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BLAST of Lsi01G006280 vs. ExPASy TrEMBL
Match: A0A6J1HE87 (uncharacterized protein LOC111463382 OS=Cucurbita moschata OX=3662 GN=LOC111463382 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MRRVPAKIIPNFQSSRICPNSIMASEGNREMQSSVDSKKKGVEEKEEKQKETEKSVKL-P 60
           MRRVPAKIIPNFQSS + P SIMAS+G RE+Q SVD ++ GVEEKE+K  E +K+VKL P
Sbjct: 42  MRRVPAKIIPNFQSSSVYPKSIMASDGAREIQ-SVDLQRTGVEEKEKKATE-KKAVKLPP 101

Query: 61  PPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAPNS 103
           PPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSA NS
Sbjct: 102 PPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSASNS 142

[Close]

BLAST of Lsi01G006280 vs. ExPASy TrEMBL
Match: A0A5D3CL09 (UPF0651 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001550 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 70/83 (84.34%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 23  MASEGNREMQSSVDSKKKG-----VEEKEEKQKETEKSVKLPPPPEKPLPGDCCGSGCVR 82
           MAS+  REMQSSVDSKKKG     VE++EEK+KE EK VKLPPPPEKPLPGDCCGSGCVR
Sbjct: 1   MASDATREMQSSVDSKKKGAEEEKVEKEEEKEKEKEKIVKLPPPPEKPLPGDCCGSGCVR 60

Query: 83  CVWDVYYEELEDYNKLCEKGSAP 101
           CVWDVYYEELEDYNKLCEKGSAP
Sbjct: 61  CVWDVYYEELEDYNKLCEKGSAP 83

[Close]

BLAST of Lsi01G006280 vs. ExPASy TrEMBL
Match: A0A0A0KKK8 (Glutaredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G504670 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 70/77 (90.91%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 23 MASEGNREMQSSVDSKKKGV-EEKEEKQKETEKSVKLPPPPEKPLPGDCCGSGCVRCVWD 82
          MASEG REMQSSVDSKKKGV EEK EK+KE E+ VKLPPPPEKPLPGDCCGSGCVRCVWD
Sbjct: 1  MASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLPPPPEKPLPGDCCGSGCVRCVWD 60

Query: 83 VYYEELEDYNKLCEKGS 99
          VYYEELEDYNKLCEKGS
Sbjct: 61 VYYEELEDYNKLCEKGS 77

[Close]

BLAST of Lsi01G006280 vs. NCBI nr
Match: KAE8647601.1 (hypothetical protein Csa_004062 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 4.6e-43
Identity = 92/101 (91.09%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MRRVPAKIIPNFQSSRICPNSIMASEGNREMQSSVDSKKKGV-EEKEEKQKETEKSVKLP 60
           MRRVP KIIPNFQSSRI PNSIMASEG REMQSSVDSKKKGV EEK EK+KE E+ VKLP
Sbjct: 42  MRRVPTKIIPNFQSSRIYPNSIMASEGTREMQSSVDSKKKGVEEEKAEKEKEKEEMVKLP 101

Query: 61  PPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAP 101
           PPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAP
Sbjct: 102 PPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAP 142

[Close]

BLAST of Lsi01G006280 vs. NCBI nr
Match: XP_038881411.1 (uncharacterized protein LOC120072947 [Benincasa hispida])

HSP 1 Score: 169.1 bits (427), Expect = 2.0e-38
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MRRVPAKIIPNFQSSRICPNSIMASEGNREMQSSVDSKKKGVEEKEEKQKETEKSVKLPP 60
           MRRVPAKIIPNFQS RI PNSIMASEG REMQSSVDSK+KG E+KE+K    EK+VKLPP
Sbjct: 42  MRRVPAKIIPNFQSPRIYPNSIMASEGTREMQSSVDSKEKGTEKKEKK----EKNVKLPP 101

Query: 61  PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEK 97
           PPEKPLPGDCCGSGCVRCVWD+YYEELEDYNKLCEK
Sbjct: 102 PPEKPLPGDCCGSGCVRCVWDIYYEELEDYNKLCEK 133

[Close]

BLAST of Lsi01G006280 vs. NCBI nr
Match: XP_023003942.1 (uncharacterized protein LOC111497385 [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-37
Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   MRRVPAKIIPNFQSSRICPNSIMASEGNREMQSSVDSKKKGVEEKEEKQKETEKSVKLPP 60
           MRR PAKIIPNFQSS + P SIMAS+G RE Q SVD ++ GVEEKE  +KETEK+VKLPP
Sbjct: 42  MRRFPAKIIPNFQSSSVYPKSIMASDGARETQ-SVDLQRTGVEEKE--KKETEKAVKLPP 101

Query: 61  PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAPNS 103
           PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSA NS
Sbjct: 102 PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSASNS 140

[Close]

BLAST of Lsi01G006280 vs. NCBI nr
Match: XP_023518260.1 (uncharacterized protein LOC111781791 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MRRVPAKIIPNFQSSRICPNSIMASEGNREMQSSVDSKKKGVEEKEEKQKETEKSVKLPP 60
           MRRVPAKIIPNFQSS + P SIMAS+G RE+Q SVD ++ GVEEKE+K  E +K+VKLPP
Sbjct: 42  MRRVPAKIIPNFQSSSVYPKSIMASDGAREIQ-SVDLQRTGVEEKEKKATE-KKAVKLPP 101

Query: 61  PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAPNS 103
           PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSA NS
Sbjct: 102 PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSASNS 141

[Close]

BLAST of Lsi01G006280 vs. NCBI nr
Match: KAG6594792.1 (hypothetical protein SDJN03_11345, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026759.1 SPCP31B10.02, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MRRVPAKIIPNFQSSRICPNSIMASEGNREMQSSVDSKKKGVEEKEEKQKETEKSVKLPP 60
           MRRVPAKIIPNFQSS + P SIMAS+G RE+Q SVD ++ GVEEKE+K  E +K+VKLPP
Sbjct: 42  MRRVPAKIIPNFQSSSVYPKSIMASDGAREIQ-SVDLQRTGVEEKEKKATE-KKAVKLPP 101

Query: 61  PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSAPNS 103
           PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSA NS
Sbjct: 102 PPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSASNS 141

[Close]

BLAST of Lsi01G006280 vs. TAIR 10
Match: AT5G17280.1 (CONTAINS InterPro DOMAIN/s: Oxidoreductase-like, N-terminal (InterPro:IPR019180); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-17
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 2   RRVPAK-IIPNFQSSRICPNSIMASE---GNREMQSSVDSKKKGVEEKEEKQKETEKSVK 61
           R +P K    N+  + + P   + S       E ++ V++ K+   +KE + K+ E  V 
Sbjct: 33  RHLPLKRSFSNYSITSVSPEQQLKSPVTMATTESKNLVEASKEETNKKETEDKK-EVGVS 92

Query: 62  LPPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNK 93
           +PPPPEKP PGDCCGSGCVRCVWDVYY+ELEDYNK
Sbjct: 93  VPPPPEKPEPGDCCGSGCVRCVWDVYYDELEDYNK 126

The following BLAST results are available for this feature:

BLAST of Lsi01G006280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9USH2	2.5e-07	53.66	UPF0651 protein P31B10.02, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
B1AS42	1.5e-04	47.62	NADH-cytochrome b5 reductase-like OS=Mus musculus OX=10090 GN=Cyb5rl PE=2 SV=1	[more]

BLAST of Lsi01G006280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KP06	1.1e-37	82.35	uncharacterized protein LOC111497385 OS=Cucurbita maxima OX=3661 GN=LOC111497385...	[more]
A0A6J1BUD5	9.0e-37	80.39	uncharacterized protein LOC111005446 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1HE87	1.3e-35	80.58	uncharacterized protein LOC111463382 OS=Cucurbita moschata OX=3662 GN=LOC1114633...	[more]
A0A5D3CL09	1.3e-30	84.34	UPF0651 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0015...	[more]
A0A0A0KKK8	1.3e-30	90.91	Glutaredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G50467...	[more]

BLAST of Lsi01G006280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647601.1	4.6e-43	91.09	hypothetical protein Csa_004062 [Cucumis sativus]	[more]
XP_038881411.1	2.0e-38	86.46	uncharacterized protein LOC120072947 [Benincasa hispida]	[more]
XP_023003942.1	2.2e-37	82.35	uncharacterized protein LOC111497385 [Cucurbita maxima]	[more]
XP_023518260.1	1.1e-36	81.37	uncharacterized protein LOC111781791 [Cucurbita pepo subsp. pepo]	[more]
KAG6594792.1	1.1e-36	81.37	hypothetical protein SDJN03_11345, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi01G006280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17280.1	2.1e-17	48.42	CONTAINS InterPro DOMAIN/s: Oxidoreductase-like, N-terminal (InterPro:IPR019180)...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019180	Oxidoreductase-like, N-terminal	PFAM	PF09791	Oxidored-like	coord: 56..95 e-value: 1.7E-15 score: 56.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..65
IPR039251	Oxidoreductase-like domain-containing protein 1	PANTHER	PTHR21193	OXIDOREDUCTASE-LIKE DOMAIN-CONTAINING PROTEIN 1	coord: 21..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G006280.1	Lsi01G006280.1	mRNA