Lsi01G006240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G006240
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 5034357 .. 5035014 (+)
RNA-Seq ExpressionLsi01G006240
SyntenyLsi01G006240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGAGAAAGGGGTTGTGGGGTTCTTTTGGTTCTTGGAATTGTGTTGAGCACTTACTTGGTTGAGGGTAAGGGGGTGAAGAGTTTTGAAAAAAGTGAGTCTTGGTACTACATCCAATCAATGGTCTAATTTGGATCAAACCCTCTTTGGAGTTGGTGTAACCGGAAGAAATGTGACTGTTACCGCCGGCAAGGGTGGAGGAAGTTCATCCCGTGAAGGCGGCGGCGGCGGTGGTGGTGGAGGAGTAGGGGAAAGTGGTGGTGGTGGGGTAAGAAAGAAAGATACAAAACATAATAAAAAGCATGGAAAAAGCGGGAATGGCGGCGGGGCAGGTGGCGGAGGCGGCAATGGCGGGGGCGGAGGCGGTGGAGGTGGAAAGGGCGGTGGTGGAGGTGGAGGTGGAGGGGGAAATGGAAAAGGCTATGGATGGGGAGAGGGCAGTGGAGGTGGTGGCGGCGGTGGAGGAGGAGGAGGTGGAGGTGGAGGTGGAGGTGGTGGCGGTGGAGGAGGAGGAAGTGGTGGAGGTGGAGGTGGAGGAAGTGGTGGAGGATGGGGTTTTGGCGGAGGAGGGAGTAGGGGTTTTTGTTGGATTTGGGGATGCGGCGGCGGCGGTCATGGAAAAGCATTGGGTAGAAGAGGAGGTCCCTCAAATTAA

mRNA sequence

ATGGAGAGAGAAAGGGGTTGTGGGGTTCTTTTGGTTCTTGGAATTGTGTTGAGCACTTACTTGGTTGAGGTTGGTGTAACCGGAAGAAATGTGACTGTTACCGCCGGCAAGGGTGGAGGAAGTTCATCCCGTGAAGGCGGCGGCGGCGGTGGTGGTGGAGGAGTAGGGGAAAGTGGTGGTGGTGGGGTAAGAAAGAAAGATACAAAACATAATAAAAAGCATGGAAAAAGCGGGAATGGCGGCGGGGCAGGTGGCGGAGGCGGCAATGGCGGGGGCGGAGGCGGTGGAGGTGGAAAGGGCGGTGGTGGAGGTGGAGGTGGAGGGGGAAATGGAAAAGGCTATGGATGGGGAGAGGGCAGTGGAGGTGGTGGCGGCGGTGGAGGAGGAGGAGGTGGAGGTGGAGGTGGAGGTGGTGGCGGTGGAGGAGGAGGAAGTGGTGGAGGTGGAGGTGGAGGAAGTGGTGGAGGATGGGGTTTTGGCGGAGGAGGGAGTAGGGGTTTTTGTTGGATTTGGGGATGCGGCGGCGGCGGTCATGGAAAAGCATTGGGTAGAAGAGGAGGTCCCTCAAATTAA

Coding sequence (CDS)

ATGGAGAGAGAAAGGGGTTGTGGGGTTCTTTTGGTTCTTGGAATTGTGTTGAGCACTTACTTGGTTGAGGTTGGTGTAACCGGAAGAAATGTGACTGTTACCGCCGGCAAGGGTGGAGGAAGTTCATCCCGTGAAGGCGGCGGCGGCGGTGGTGGTGGAGGAGTAGGGGAAAGTGGTGGTGGTGGGGTAAGAAAGAAAGATACAAAACATAATAAAAAGCATGGAAAAAGCGGGAATGGCGGCGGGGCAGGTGGCGGAGGCGGCAATGGCGGGGGCGGAGGCGGTGGAGGTGGAAAGGGCGGTGGTGGAGGTGGAGGTGGAGGGGGAAATGGAAAAGGCTATGGATGGGGAGAGGGCAGTGGAGGTGGTGGCGGCGGTGGAGGAGGAGGAGGTGGAGGTGGAGGTGGAGGTGGTGGCGGTGGAGGAGGAGGAAGTGGTGGAGGTGGAGGTGGAGGAAGTGGTGGAGGATGGGGTTTTGGCGGAGGAGGGAGTAGGGGTTTTTGTTGGATTTGGGGATGCGGCGGCGGCGGTCATGGAAAAGCATTGGGTAGAAGAGGAGGTCCCTCAAATTAA

Protein sequence

MERERGCGVLLVLGIVLSTYLVEVGVTGRNVTVTAGKGGGSSSREGGGGGGGGGVGESGGGGVRKKDTKHNKKHGKSGNGGGAGGGGGNGGGGGGGGGKGGGGGGGGGGNGKGYGWGEGSGGGGGGGGGGGGGGGGGGGGGGGGSGGGGGGGSGGGWGFGGGGSRGFCWIWGCGGGGHGKALGRRGGPSN
Homology
[Close]
BLAST of Lsi01G006240 vs. NCBI nr
Match: KAG6603927.1 (hypothetical protein SDJN03_04536, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-16
Identity = 139/226 (61.50%), Postives = 144/226 (63.72%), Query Frame = 0 

Query: 1   MERERGCGVLLVLGIVLSTYLVE---------------------------VGVTGRNVTV 60
           MER RGCGVLLV+GIVLS YLVE                           VGV+GRN TV
Sbjct: 39  MERGRGCGVLLVVGIVLSLYLVEGVKGFERSGRVGASNEWSKLDGRPFEGVGVSGRNATV 98

Query: 61  TAGK-----------GGGSSSREGGGGGGGGGVGESGGGGVRKKDTKHNKKHGKSGNGGG 120
             G+           GGG     GGGGGGGG  GE  G GVRKKDTKH+KKHGK GNGG 
Sbjct: 99  NGGRDSVKRGITNGGGGGGGGGGGGGGGGGGAGGEGSGVGVRKKDTKHSKKHGKGGNGG- 158

Query: 121 AGGGGGNGGGGGGGGGKGGGGGGGGGGNGKGYGWGEGSGGGGGGGGGGGGGGGGGGGGGG 180
                  GGGGGGGGGKG G GGGGGG G       G GGGGGGGGGGGGGGGGGGGGG 
Sbjct: 159 -------GGGGGGGGGKGYGWGGGGGGGG-------GGGGGGGGGGGGGGGGGGGGGGGS 218

Query: 181 GGSGGGGGGGSGGGWGFGGGGSRGFCWIWGCGGGGHGKALGRRGGP 189
           GG GGGGGGGSGGGWGFGGGGSR FCWIWGCGGG   KA  R+ GP
Sbjct: 219 GGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPRKEGP 249

The following BLAST results are available for this feature:
BLAST of Lsi01G006240 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G006240 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G006240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603927.18.9e-1661.50hypothetical protein SDJN03_04536, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi01G006240 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 123..133
score: 45.45
coord: 98..113
score: 52.34
coord: 38..49
score: 34.38
coord: 147..165
score: 40.79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G006240.1Lsi01G006240.1mRNA