Lsi01G006170 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G006170
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Histone H1
Location	chr01: 4940151 .. 4941473 (+)
RNA-Seq Expression	Lsi01G006170
Synteny	Lsi01G006170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGAGAAAACACAAAGTCTCTTACATTTTCTTTTCTATGAAAATACAAGGAAAAACAATCCTCTCATTTGTATTTATCCAAATACCTTCTCCCTTCAGGATTTGGATCTCGTGATAACGATCTGTTCTTTTCCACGTGTGCGCTCCAGATCTTTTTTTAGTACAGGTTGGCTATCCGCGTCCACTCGGACTGCCCAATCACAGCTCGTTTTTCCCTCCACGTCCAGATTCTTCTTCCCCTATAACTGCCTCAGAGCAGTCCTCCGTCTCGAGCATATTCGCTGAGCGGTTGTTTCTCGTTCGGTAGTTTGTGAAAATTTTAATCATGTCATCAACCGGAGAGGCTGAAGTGAAAGTTCCGGCGGAGGATGTTCCTCCTGTGGAGGTTCCGGCTGCAGAGGAGCCGAAGGAGGCCGAGAAGCCGCCGGTGAAGGAGAAGAAACCTAGGGCTCCGAGGGAGAAGAAGCCAAGGCAGTCTAAAGTTGCTTCACATCCACCGTATTTTCAGGTAATTATGTCTGTTGATGTTTTGATTGTGTTGATTTTGATTGAATGGAGTGAGAATTCTGATGAATTGTAATGTGATTGCAGATGATCAATGAAGCAATCTCGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCTATAGCGAAATACATGGAGGAGAAACACAAGGCGGTTCTACCAGCGAATTTCAGGAAAATCTTGGCTCTGCAATTGAAGAATTCCACCGCTAAAGGAAAACTAACGAAGATCAAGGCATCGTATAAGCTGTCCGAAACGGGAATGAAGAAAGAGAAGAACGCAACGAAGGTCGCAAAAGCGAACGCAGAGAAGAAAACTAAACAGGCAAGAACGACAAGAAGTACTGGAAGGAAGAGGAAGGCGGTGAAGAAGGACGAGGTGGCGAGTAAAGCGGTGAAGCCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGATCAACTCCGGCGAAGCCAAAACAGCCGAAATCAATCAGGGCCCCTGCTGCGAAGAGGGCTAAGAAAGCGGTTGCGGGAATGTAGAGTAGAGTTCAAACAAGTTGTCTTTGAATCAATCCTCTTTTGTGAATATCTTGCTTATGAATTACGATCATGTAGTGTGTAAATTCTGGGATCTTGTGATCTTTTAGTCTTTGCTTTAATAACTGCAGTGGAAATAAATCCTTTCTTGTTCAGAATTTCAATGTTCTTGATATGATACAATGTTCATATTCATCCTTTCAATTCGAGACACATGGCTCTGGTTTGCTGTTTGAATTAGAAAAGAGAATCAATAGGAACTCCTGGATTTACTTCAA

mRNA sequence

AACAGAGAAAACACAAAGTCTCTTACATTTTCTTTTCTATGAAAATACAAGGAAAAACAATCCTCTCATTTGTATTTATCCAAATACCTTCTCCCTTCAGGATTTGGATCTCGTGATAACGATCTGTTCTTTTCCACGTGTGCGCTCCAGATCTTTTTTTAGTACAGGTTGGCTATCCGCGTCCACTCGGACTGCCCAATCACAGCTCGTTTTTCCCTCCACGTCCAGATTCTTCTTCCCCTATAACTGCCTCAGAGCAGTCCTCCGTCTCGAGCATATTCGCTGAGCGGTTGTTTCTCGTTCGGTAGTTTGTGAAAATTTTAATCATGTCATCAACCGGAGAGGCTGAAGTGAAAGTTCCGGCGGAGGATGTTCCTCCTGTGGAGGTTCCGGCTGCAGAGGAGCCGAAGGAGGCCGAGAAGCCGCCGGTGAAGGAGAAGAAACCTAGGGCTCCGAGGGAGAAGAAGCCAAGGCAGTCTAAAGTTGCTTCACATCCACCGTATTTTCAGATGATCAATGAAGCAATCTCGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCTATAGCGAAATACATGGAGGAGAAACACAAGGCGGTTCTACCAGCGAATTTCAGGAAAATCTTGGCTCTGCAATTGAAGAATTCCACCGCTAAAGGAAAACTAACGAAGATCAAGGCATCGTATAAGCTGTCCGAAACGGGAATGAAGAAAGAGAAGAACGCAACGAAGGTCGCAAAAGCGAACGCAGAGAAGAAAACTAAACAGGCAAGAACGACAAGAAGTACTGGAAGGAAGAGGAAGGCGGTGAAGAAGGACGAGGTGGCGAGTAAAGCGGTGAAGCCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGATCAACTCCGGCGAAGCCAAAACAGCCGAAATCAATCAGGGCCCCTGCTGCGAAGAGGGCTAAGAAAGCGGTTGCGGGAATGTAGAGTAGAGTTCAAACAAGTTGTCTTTGAATCAATCCTCTTTTGTGAATATCTTGCTTATGAATTACGATCATGTAGTGTGTAAATTCTGGGATCTTGTGATCTTTTAGTCTTTGCTTTAATAACTGCAGTGGAAATAAATCCTTTCTTGTTCAGAATTTCAATGTTCTTGATATGATACAATGTTCATATTCATCCTTTCAATTCGAGACACATGGCTCTGGTTTGCTGTTTGAATTAGAAAAGAGAATCAATAGGAACTCCTGGATTTACTTCAA

Coding sequence (CDS)

ATGTCATCAACCGGAGAGGCTGAAGTGAAAGTTCCGGCGGAGGATGTTCCTCCTGTGGAGGTTCCGGCTGCAGAGGAGCCGAAGGAGGCCGAGAAGCCGCCGGTGAAGGAGAAGAAACCTAGGGCTCCGAGGGAGAAGAAGCCAAGGCAGTCTAAAGTTGCTTCACATCCACCGTATTTTCAGATGATCAATGAAGCAATCTCGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCTATAGCGAAATACATGGAGGAGAAACACAAGGCGGTTCTACCAGCGAATTTCAGGAAAATCTTGGCTCTGCAATTGAAGAATTCCACCGCTAAAGGAAAACTAACGAAGATCAAGGCATCGTATAAGCTGTCCGAAACGGGAATGAAGAAAGAGAAGAACGCAACGAAGGTCGCAAAAGCGAACGCAGAGAAGAAAACTAAACAGGCAAGAACGACAAGAAGTACTGGAAGGAAGAGGAAGGCGGTGAAGAAGGACGAGGTGGCGAGTAAAGCGGTGAAGCCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGATCAACTCCGGCGAAGCCAAAACAGCCGAAATCAATCAGGGCCCCTGCTGCGAAGAGGGCTAAGAAAGCGGTTGCGGGAATGTAG

Protein sequence

MSSTGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVVAKKPKRSTPAKPKQPKSIRAPAAKRAKKAVAGM

Homology

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BLAST of Lsi01G006170 vs. ExPASy Swiss-Prot
Match: P40267 (Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.2e-42
Identity = 118/210 (56.19%), Postives = 145/210 (69.05%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYF 60
           M++ GE E        P V     E  K  E+ P  +KKPRAP+EKKP+ +K  +HPPYF
Sbjct: 1   MTAIGEVE-------NPTVVQRPTEASKVKEQAPATDKKPRAPKEKKPKSAKAVTHPPYF 60

Query: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120
           QMI EA+ +LNEK GSSPYA+AKYME+KHK  LPANFRKIL LQLKNS AKGKL KIKAS
Sbjct: 61  QMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKAS 120

Query: 121 YKLSETGMKKEKNAT---KVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKK 180
           YKLSE G K+    T   K+ KA+++KK +  R T +  +K +  KK    +KA    KK
Sbjct: 121 YKLSEAGKKETTTKTSTKKLPKADSKKKPRSTRATATAAKKTEVPKK----AKATPKPKK 180

Query: 181 VVAKKPKRSTPAKPKQPKSIRAPAAKRAKK 208
           V AK+ ++STPAK KQPKSI++PAAKRAKK
Sbjct: 181 VGAKRTRKSTPAKAKQPKSIKSPAAKRAKK 199

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BLAST of Lsi01G006170 vs. ExPASy Swiss-Prot
Match: P27806 (Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-18
Identity = 99/236 (41.95%), Postives = 131/236 (55.51%), Query Frame = 0


Query: 7   AEVKVPAEDV---PPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYFQMI 66
           A++ VP  +V     V+ PAA   K A+ P   + K   P  KKPR +   +HP Y +M+
Sbjct: 8   ADIPVPQVEVAADAAVDTPAA---KPAKAPKAAKAKKSTPGPKKPRVT--PAHPSYAEMV 67

Query: 67  NEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKL 126
           +EAI++L E++GSS  AI K++E+KHKA LPANFRKIL  Q+K   A GKLTK+K SYKL
Sbjct: 68  SEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKL 127

Query: 127 S--------ETGMKKEKNATKVAKANAEK-------KTKQARTTRSTGRKRKAVKKDEVA 186
           +        +T  KK+  A   AKA A+K       K   A+       K KAV K + A
Sbjct: 128 AKAPAAVKPKTATKKKPAAKPKAKAPAKKTAAKSPAKKAAAKPKAKAPAKAKAVAKPKAA 187

Query: 187 SK---AVKPVKKVVAKK-PKRSTPAKP--KQPKSIRA-----------PAAKRAKK 208
           +K   A KP  K  AKK P  +TP KP  ++P + RA           PAAK+AKK
Sbjct: 188 AKPKAAAKPKAKAAAKKAPAAATPKKPAARKPPTKRATPVKKAAPAKKPAAKKAKK 238

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BLAST of Lsi01G006170 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 87/190 (45.79%), Postives = 107/190 (56.32%), Query Frame = 0


Query: 20  EVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPY 79
           EVP  EEPK   +   K K  +  +  KPR    ASHP Y +MI +AI SL EKNGSS Y
Sbjct: 28  EVPEKEEPKAEVEKTKKAKGSKPKKASKPRNP--ASHPTYEEMIKDAIVSLKEKNGSSQY 87

Query: 80  AIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSETGMKKEKNATKVAK 139
           AIAK++EEK K  LPANF+K+L   LK + A GKL K+K S+KLS      +K A    K
Sbjct: 88  AIAKFIEEKQKQ-LPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAA---KKPAVAKPK 147

Query: 140 ANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVVAKKPKRSTPAKPKQPKSIRA 199
           A    K K  +   +   K KAV K +VASKA     K VA KPK++  AKPK   +   
Sbjct: 148 AKTAAKAKSVKAKPAAKPKAKAVVKPKVASKA-----KAVAAKPKKAA-AKPKTVAAKTK 205

Query: 200 PAAKRAKKAV 210
           P A + K  V
Sbjct: 208 PTAAKPKAVV 205

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BLAST of Lsi01G006170 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 4.6e-16
Identity = 86/212 (40.57%), Postives = 111/212 (52.36%), Query Frame = 0


Query: 3   STGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYFQM 62
           +T   E   P  D  P     A     A+    K KK  AP+++        +H PY +M
Sbjct: 2   ATDVTETPAPLVDAAPEAPADAPAAPAADANAAKAKKATAPKKRAS-----PTHLPYAEM 61

Query: 63  INEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYK 122
           ++EAI+SL E+ GSS YAIAK++E+KHKA LP NFRK+L +QLK   A GKLTK+K SYK
Sbjct: 62  VSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYK 121

Query: 123 LSETGM--KKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVVA 182
           LS       K K A K  K  A+K    A+    T  K K   K + A+K    VK    
Sbjct: 122 LSSATKPNPKPKAAPKKPKTGAKKPKAAAKPKAKTPAKAKPATKPKPAAKPKAVVKPKTP 181

Query: 183 KKPKR--STPAKPKQPKSIRAPAAKRAKKAVA 211
            KPK   +  AKPK   +   P AK+A +A A
Sbjct: 182 AKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKA 208

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BLAST of Lsi01G006170 vs. ExPASy Swiss-Prot
Match: Q08864 (Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-15
Identity = 84/216 (38.89%), Postives = 122/216 (56.48%), Query Frame = 0


Query: 1   MSSTGEAEVKVP-AEDVPPVEVPAAEEPK----EAEKPPVKEKKPRAPREKKPRQSKVAS 60
           MS T  A V  P AE  P  E P A+ PK    +  K P   K+P+AP+EKKP+ +   +
Sbjct: 1   MSETEAAPVVAPAAEAAPAAEAPKAKAPKAKAPKQPKAPKAPKEPKAPKEKKPKAA--PT 60

Query: 61  HPPYFQMINEAISSLNEKNGSSPYAIAKYMEEKH-KAVLPANFRKILALQLKNSTAKGKL 120
           HPPY +M+ +AI++L E+NGSS  A+ K++E K+ K +   NF K L+  +K     GKL
Sbjct: 61  HPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKL 120

Query: 121 TKIKASYKLSETGMKKEKNAT-KVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAV- 180
            K+K S+KLSE    K K +T K AKA+ E K K+   + +  +K +AVKK +   + V 
Sbjct: 121 VKVKGSFKLSEALKAKAKKSTPKKAKADGEAKPKK---SEAKPKKAEAVKKTKAPKEKVE 180

Query: 181 KPVKKVVAKKPKRSTPAKPKQPKSIRAPAAKRAKKA 209
           +P K+   K  K+    K ++PK    P +   KKA
Sbjct: 181 RPKKEKKEKVEKKKATPKAEKPKKAATPKSAGKKKA 211

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BLAST of Lsi01G006170 vs. ExPASy TrEMBL
Match: A0A0A0KJB6 (Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 6.6e-82
Identity = 191/210 (90.95%), Postives = 196/210 (93.33%), Query Frame = 0


Query: 1   MSSTGE-AEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPY 60
           MSSTGE AEVKVPAEDV PVEVPA EEPKE EK PVKEKKPRA REKKPRQSKVASHPPY
Sbjct: 1   MSSTGEAAEVKVPAEDVAPVEVPATEEPKEVEK-PVKEKKPRATREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVV 180
           SYKLSETG KK+ NATKVAKANAEKKTKQARTTR+TGRKRKAVK +E  SKA   VKKVV
Sbjct: 121 SYKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKA---VKKVV 180

Query: 181 AKKPKRSTPAKPKQPKSIRAPAAKRAKKAV 210
           AKKPKRSTPAKPKQPKSI++PAAKRAKKAV
Sbjct: 181 AKKPKRSTPAKPKQPKSIKSPAAKRAKKAV 206

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BLAST of Lsi01G006170 vs. ExPASy TrEMBL
Match: A0A5A7SK97 (Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001460 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.3e-81
Identity = 191/211 (90.52%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MSSTGE-AEVKVPAEDVPPVE-VPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPP 60
           M+STGE AEVKVPAEDV PVE VPA EEPKE EK PVKEKKPRAPREKKPRQSKVASHPP
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEK-PVKEKKPRAPREKKPRQSKVASHPP 60

Query: 61  YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK 120
           YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK
Sbjct: 61  YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK 120

Query: 121 ASYKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKV 180
           ASYKLSE G KK+KNATKVAKANAEK TKQARTTR+TGRKRKAVKK+E  SKA   VKKV
Sbjct: 121 ASYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKA---VKKV 180

Query: 181 VAKKPKRSTPAKPKQPKSIRAPAAKRAKKAV 210
           VAKKPKRSTPAKPKQPKSI++PAAKRAKKAV
Sbjct: 181 VAKKPKRSTPAKPKQPKSIKSPAAKRAKKAV 207

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BLAST of Lsi01G006170 vs. ExPASy TrEMBL
Match: A0A1S3B1Z2 (histone H1 OS=Cucumis melo OX=3656 GN=LOC103485111 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.3e-81
Identity = 191/211 (90.52%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MSSTGE-AEVKVPAEDVPPVE-VPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPP 60
           M+STGE AEVKVPAEDV PVE VPA EEPKE EK PVKEKKPRAPREKKPRQSKVASHPP
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEK-PVKEKKPRAPREKKPRQSKVASHPP 60

Query: 61  YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK 120
           YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK
Sbjct: 61  YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK 120

Query: 121 ASYKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKV 180
           ASYKLSE G KK+KNATKVAKANAEK TKQARTTR+TGRKRKAVKK+E  SKA   VKKV
Sbjct: 121 ASYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKA---VKKV 180

Query: 181 VAKKPKRSTPAKPKQPKSIRAPAAKRAKKAV 210
           VAKKPKRSTPAKPKQPKSI++PAAKRAKKAV
Sbjct: 181 VAKKPKRSTPAKPKQPKSIKSPAAKRAKKAV 207

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BLAST of Lsi01G006170 vs. ExPASy TrEMBL
Match: A0A6J1GFQ2 (histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111453744 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.0e-74
Identity = 179/210 (85.24%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYF 60
           MSSTGEAEVKVPAED P VEVP+AEE KEAEK PV+EKK R PREKKPRQSKVASHPPYF
Sbjct: 1   MSSTGEAEVKVPAEDAPSVEVPSAEETKEAEK-PVEEKKSRTPREKKPRQSKVASHPPYF 60

Query: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120
           QMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKAS
Sbjct: 61  QMIMEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKAS 120

Query: 121 YKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVVA 180
           Y+LSE G KK+K A+KVAKANAEKKTKQARTTR+T  KR    KDE ASKA K +KKVVA
Sbjct: 121 YELSEAG-KKDKKASKVAKANAEKKTKQARTTRATAGKR----KDEAASKAAKAMKKVVA 180

Query: 181 KKPKRSTPAKPKQPKSIRAPAAKRAKKAVA 211
           KKPKR+TPAKPKQPKSIR+PAAKRAKKAVA
Sbjct: 181 KKPKRTTPAKPKQPKSIRSPAAKRAKKAVA 204

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BLAST of Lsi01G006170 vs. ExPASy TrEMBL
Match: A0A6J1IMR2 (histone H1 OS=Cucurbita maxima OX=3661 GN=LOC111478808 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.0e-74
Identity = 177/210 (84.29%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYF 60
           MSSTGE EVKVPAED P  EVP+AEEPKEAEK PV+EKK R PREKKPRQSKVASHPPYF
Sbjct: 1   MSSTGETEVKVPAEDAPSAEVPSAEEPKEAEK-PVEEKKSRTPREKKPRQSKVASHPPYF 60

Query: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120
           QMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKAS
Sbjct: 61  QMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKAS 120

Query: 121 YKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVVA 180
           Y+LSE G KK+K A+KVAKANAEK TKQARTTR+T  KR    KDE ASK  K VKKVVA
Sbjct: 121 YELSEAG-KKDKKASKVAKANAEKNTKQARTTRATAGKR----KDEAASKTAKAVKKVVA 180

Query: 181 KKPKRSTPAKPKQPKSIRAPAAKRAKKAVA 211
           KKPKR+TPAKPKQPKSIR+PAAKRAKKAVA
Sbjct: 181 KKPKRTTPAKPKQPKSIRSPAAKRAKKAVA 204

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BLAST of Lsi01G006170 vs. NCBI nr
Match: XP_038883821.1 (histone H1 [Benincasa hispida])

HSP 1 Score: 341.7 bits (875), Expect = 4.7e-90
Identity = 199/210 (94.76%), Postives = 203/210 (96.67%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYF 60
           MSS GEAEVKVPAEDVPPV VPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYF
Sbjct: 1   MSSIGEAEVKVPAEDVPPVMVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYF 60

Query: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120
           QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKIL+LQLKNSTAKGKLTKIKAS
Sbjct: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILSLQLKNSTAKGKLTKIKAS 120

Query: 121 YKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVVA 180
           YKLSETG KK+KNATKVAKANAEKKTKQARTTR+TGRKRKAVKKDE ASKA K VKKVVA
Sbjct: 121 YKLSETGKKKDKNATKVAKANAEKKTKQARTTRTTGRKRKAVKKDEAASKAAKAVKKVVA 180

Query: 181 KKPKRSTPAKPKQPKSIRAPAAKRAKKAVA 211
           KKPKRSTPAKPK PKSIR+PAAKRAKKAVA
Sbjct: 181 KKPKRSTPAKPKPPKSIRSPAAKRAKKAVA 210

[Close]

BLAST of Lsi01G006170 vs. NCBI nr
Match: XP_004134874.1 (histone H1 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-81
Identity = 191/210 (90.95%), Postives = 196/210 (93.33%), Query Frame = 0


Query: 1   MSSTGE-AEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPY 60
           MSSTGE AEVKVPAEDV PVEVPA EEPKE EK PVKEKKPRA REKKPRQSKVASHPPY
Sbjct: 1   MSSTGEAAEVKVPAEDVAPVEVPATEEPKEVEK-PVKEKKPRATREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVV 180
           SYKLSETG KK+ NATKVAKANAEKKTKQARTTR+TGRKRKAVK +E  SKA   VKKVV
Sbjct: 121 SYKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKA---VKKVV 180

Query: 181 AKKPKRSTPAKPKQPKSIRAPAAKRAKKAV 210
           AKKPKRSTPAKPKQPKSI++PAAKRAKKAV
Sbjct: 181 AKKPKRSTPAKPKQPKSIKSPAAKRAKKAV 206

[Close]

BLAST of Lsi01G006170 vs. NCBI nr
Match: XP_008440801.1 (PREDICTED: histone H1 [Cucumis melo] >KAA0025689.1 histone H1 [Cucumis melo var. makuwa] >TYK12564.1 histone H1 [Cucumis melo var. makuwa])

HSP 1 Score: 310.1 bits (793), Expect = 1.5e-80
Identity = 191/211 (90.52%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MSSTGE-AEVKVPAEDVPPVE-VPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPP 60
           M+STGE AEVKVPAEDV PVE VPA EEPKE EK PVKEKKPRAPREKKPRQSKVASHPP
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEK-PVKEKKPRAPREKKPRQSKVASHPP 60

Query: 61  YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK 120
           YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK
Sbjct: 61  YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK 120

Query: 121 ASYKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKV 180
           ASYKLSE G KK+KNATKVAKANAEK TKQARTTR+TGRKRKAVKK+E  SKA   VKKV
Sbjct: 121 ASYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKA---VKKV 180

Query: 181 VAKKPKRSTPAKPKQPKSIRAPAAKRAKKAV 210
           VAKKPKRSTPAKPKQPKSI++PAAKRAKKAV
Sbjct: 181 VAKKPKRSTPAKPKQPKSIKSPAAKRAKKAV 207

[Close]

BLAST of Lsi01G006170 vs. NCBI nr
Match: KAE8647604.1 (hypothetical protein Csa_003640 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 9.4e-75
Identity = 180/209 (86.12%), Postives = 186/209 (89.00%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYF 60
           MSSTGEA           V+VPA EEPKE EK PVKEKKPRA REKKPRQSKVASHPPYF
Sbjct: 1   MSSTGEA---------AEVKVPATEEPKEVEK-PVKEKKPRATREKKPRQSKVASHPPYF 60

Query: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120
           QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS
Sbjct: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120

Query: 121 YKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVVA 180
           YKLSETG KK+ NATKVAKANAEKKTKQARTTR+TGRKRKAVK +E  SKA   VKKVVA
Sbjct: 121 YKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKA---VKKVVA 180

Query: 181 KKPKRSTPAKPKQPKSIRAPAAKRAKKAV 210
           KKPKRSTPAKPKQPKSI++PAAKRAKKAV
Sbjct: 181 KKPKRSTPAKPKQPKSIKSPAAKRAKKAV 196

[Close]

BLAST of Lsi01G006170 vs. NCBI nr
Match: XP_022950733.1 (histone H1 [Cucurbita moschata])

HSP 1 Score: 289.7 bits (740), Expect = 2.1e-74
Identity = 179/210 (85.24%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 1   MSSTGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYF 60
           MSSTGEAEVKVPAED P VEVP+AEE KEAEK PV+EKK R PREKKPRQSKVASHPPYF
Sbjct: 1   MSSTGEAEVKVPAEDAPSVEVPSAEETKEAEK-PVEEKKSRTPREKKPRQSKVASHPPYF 60

Query: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120
           QMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKAS
Sbjct: 61  QMIMEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKAS 120

Query: 121 YKLSETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVVA 180
           Y+LSE G KK+K A+KVAKANAEKKTKQARTTR+T  KR    KDE ASKA K +KKVVA
Sbjct: 121 YELSEAG-KKDKKASKVAKANAEKKTKQARTTRATAGKR----KDEAASKAAKAMKKVVA 180

Query: 181 KKPKRSTPAKPKQPKSIRAPAAKRAKKAVA 211
           KKPKR+TPAKPKQPKSIR+PAAKRAKKAVA
Sbjct: 181 KKPKRTTPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Lsi01G006170 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-26
Identity = 84/173 (48.55%), Postives = 108/173 (62.43%), Query Frame = 0


Query: 41  RAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKI 100
           + P  KKPR+ K  +HPPYFQMI EA+  L EKNGSSPYAIAK +EEKHK++LP +FRK 
Sbjct: 9   KTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKT 68

Query: 101 LALQLKNSTAKGKLTKIKASYKLSETGMKKEKNATKVAKANAEKKTKQ--ARTTRSTGRK 160
           L+LQLKNS AKGKL KI+ASYKLS+T     +   K  K N +++ K+   RT  S+ R 
Sbjct: 69  LSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRP 128

Query: 161 RKAVKKDEVASKAVKPVKKVVAKKPKRSTPAKPKQPKSIRAPAA-KRAKKAVA 211
           +K V                V K+ K+    K +QPKSI++    K+A KA A
Sbjct: 129 KKTVS---------------VNKQEKKRKVKKARQPKSIKSSVGKKKAMKASA 166

[Close]

BLAST of Lsi01G006170 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-18
Identity = 72/152 (47.37%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 62  MINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASY 121
           MI EA+  L EKNGSSPYAIAK +EEKHK++LP +FRK L+LQLKNS AKGKL KI+ASY
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 122 KLSETGMKKEKNATKVAKANAEKKTKQ--ARTTRSTGRKRKAVKKDEVASKAVKPVKKVV 181
           KLS+T     +   K  K N +++ K+   RT  S+ R +K V                V
Sbjct: 61  KLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRPKKTVS---------------V 120

Query: 182 AKKPKRSTPAKPKQPKSIRAPAA-KRAKKAVA 211
            K+ K+    K +QPKSI++    K+A KA A
Sbjct: 121 NKQEKKRKVKKARQPKSIKSSVGKKKAMKASA 137

[Close]

BLAST of Lsi01G006170 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 74.7 bits (182), Expect = 9.9e-14
Identity = 86/209 (41.15%), Postives = 107/209 (51.20%), Query Frame = 0


Query: 5   GEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYFQMIN 64
           G      P  D    + PAA+  K      VKEKK  A     P++  V+SHP Y +MI 
Sbjct: 14  GNTAADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVA---AAPKKRTVSSHPTYEEMIK 73

Query: 65  EAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLS 124
           +AI +L E+ GSS YAI K++EEK K  LP  FRK+L L LK   A GKL K+KAS+KL 
Sbjct: 74  DAIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLVKVKASFKLP 133

Query: 125 ETGMKKEKNATKVAKANAEKKTKQARTTRSTGRKRKAVKKDEVASKAVKPVKKVVAKKPK 184
               K         KA AE K+  A+   +T    KA +K   ASKA    KK +A KPK
Sbjct: 134 SASAKASS-----PKAAAE-KSAPAKKKPATVAVTKAKRKVAAASKA----KKTIAVKPK 193

Query: 185 ----RSTPAKPKQPKSIRAPAAKRAKKAV 210
               +   AK K     RA AA   +KAV
Sbjct: 194 TAAAKKVTAKAKAKPVPRATAAATKRKAV 208

[Close]

BLAST of Lsi01G006170 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-10
Identity = 74/194 (38.14%), Postives = 101/194 (52.06%), Query Frame = 0


Query: 4   TGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYFQMI 63
           +G A+  V + +  P       +     K   K  K  AP +KK      +SHP Y +MI
Sbjct: 14  SGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKK----TTSSHPTYEEMI 73

Query: 64  NEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKL 123
            +AI +L E+ GSS YAI K++EEKHK+ LP  FRK+L + LK   A  KL K+KAS+K+
Sbjct: 74  KDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 124 -SETGMKKEKNATKV-AKANAEKKTKQART-TRSTGRKRKAVKKDEVASKAVKPVKKVVA 183
            S       K A  V  KA    K K +RT TR++  K+ A    +VA     P K V  
Sbjct: 134 PSARSAATPKPAAPVKKKATVVAKPKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKV 193

Query: 184 KKP-KRSTPAKPKQ 194
           K P KR++  K K+
Sbjct: 194 KSPAKRASTRKAKK 202

[Close]

BLAST of Lsi01G006170 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-10
Identity = 78/222 (35.14%), Postives = 107/222 (48.20%), Query Frame = 0


Query: 4   TGEAEVKVPAEDVPPVEVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYFQMI 63
           +G A+  V + +  P       +     K   K  K  AP +KK      +SHP Y +MI
Sbjct: 14  SGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKK----TTSSHPTYEEMI 73

Query: 64  NEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKL 123
            +AI +L E+ GSS YAI K++EEKHK+ LP  FRK+L + LK   A  KL K+KAS+K+
Sbjct: 74  KDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLVKVKASFKI 133

Query: 124 --------SETGMKKEKNAT-------KVAKANAEKKTKQARTTRSTGRKRKAVKKDEVA 183
                    +     +K AT       KVA A A  K K A    + G K+ A K    A
Sbjct: 134 PSARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAA----AKGTKKPAAKVVAKA 193

Query: 184 SKAVKPVKKVVAKKPKRSTPAKPKQPKSIRAPAAKRAKKAVA 211
               KP  KV A KPK  + A   + K++ A    + + A A
Sbjct: 194 KVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKA 226

The following BLAST results are available for this feature:

BLAST of Lsi01G006170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40267	2.2e-42	56.19	Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1	[more]
P27806	1.0e-18	41.95	Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2	[more]
P08283	1.3e-18	45.79	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P23444	4.6e-16	40.57	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
Q08864	3.0e-15	38.89	Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3	[more]

BLAST of Lsi01G006170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJB6	6.6e-82	90.95	Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1	[more]
A0A5A7SK97	7.3e-81	90.52	Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001460 PE...	[more]
A0A1S3B1Z2	7.3e-81	90.52	histone H1 OS=Cucumis melo OX=3656 GN=LOC103485111 PE=3 SV=1	[more]
A0A6J1GFQ2	1.0e-74	85.24	histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111453744 PE=3 SV=1	[more]
A0A6J1IMR2	3.0e-74	84.29	histone H1 OS=Cucurbita maxima OX=3661 GN=LOC111478808 PE=3 SV=1	[more]

BLAST of Lsi01G006170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883821.1	4.7e-90	94.76	histone H1 [Benincasa hispida]	[more]
XP_004134874.1	1.4e-81	90.95	histone H1 [Cucumis sativus]	[more]
XP_008440801.1	1.5e-80	90.52	PREDICTED: histone H1 [Cucumis melo] >KAA0025689.1 histone H1 [Cucumis melo var....	[more]
KAE8647604.1	9.4e-75	86.12	hypothetical protein Csa_003640 [Cucumis sativus]	[more]
XP_022950733.1	2.1e-74	85.24	histone H1 [Cucurbita moschata]	[more]

BLAST of Lsi01G006170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18050.1	6.6e-26	48.55	histone H1-3	[more]
AT2G18050.2	1.7e-18	47.37	histone H1-3	[more]
AT1G06760.1	9.9e-14	41.15	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	2.3e-10	38.14	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.1	3.9e-10	35.14	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 147..161 score: 27.41 coord: 69..86 score: 33.33 coord: 183..200 score: 35.19 coord: 42..63 score: 34.34
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 53..120 e-value: 1.9E-29 score: 113.8
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 56..123 e-value: 5.1E-17 score: 62.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 55..125 score: 29.206251
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 54..136 e-value: 1.47374E-18 score: 74.9651
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 51..138 e-value: 1.1E-18 score: 69.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..150
None	No IPR available	PANTHER	PTHR11467:SF50	HISTONE H1	coord: 3..210
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 3..210
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 54..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G006170.1	Lsi01G006170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding