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Lsi01G005390 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTGGTTTTAGGAATTACATAATAAAGTGCTCAAATTCGACACCAGTTACTCTTGGTTCTAATCCTAGATATAAGCAAACAAAAATAAATATTACTATGTTTTTTGCTAACTTCAGTCATCATTCACACCAAAAGTCTCATTCCATGAAATATTGATTGTTTGTGTGGGGTTCGTTCTTCCAAATGCTCCAAGGCATATCTCAATCTTCCTATTTTCAAATTTGGATATATAGACATGGTAGAAAGTCCTTCACACAAGAAGCATGTATTAAGACCTTACAATGTCATTCAATTGTATAAGTGCATACCATAACATCAAATTGCTCAGGCTTTGAGACAAGTTGCATGCAGCAGTTGTCGACAATAACTTCGTTGTACTTTATTCCAGGATACTTTGTGGCAACCTCTCGACAAGATTCTAGAAATAGACCATCTGCAAGCTTCATGATATTTGCTTTGTGCACAGCTGTAACTTTCTTTCTGTTGTTCAGGTAAGCATACTCGAAAGCATATTTAGCAATGCGCTCAGAACAGAACTTTGTTATCACCTGGCAAAAGAGTGAGTATGAGAGACAAAGATACTAGGAAAAGGGGGGAAATCCTTATCATGTATTGAAGGTTAAAATTCTAAAAGACCTTCTTCTATTGATATGCTAAGCCACATAGTATTGGTGCGACAAAATACATATAACTAGTTACATCATACCAATGAGATGCCTACACTACAGCAGAGAAGGGTCTAGTCTAACATAACTACTCTTCTCATAACTCACAAAAACTGCTCAGAAACATTTTGAAGGAACTTCTCTCGTAAGGAGGAAAAAAGAAAAACCCTGAGAATTGCATGGTATCTACCAACTTCGAGATCTTAAAAATGTAGATGACCAAACCTAAAGACTGTCTAAAACATTAACGTCCCGTCTAATGGCCTTTTTCTAATTTTTGAAGATTAAGCTTATACAGAGTACTTCAACCTAACCTACCCATGTGTTTCTTGGCTTTGTTATGTAATATTAAGAATGTTTTTATAACCTAAGCCAAAATGTAAAAATCAAAAAACACAATTTAAACAAAAAAAATGTTTCTGTTTTTGAAACTTAGCAAATAATTTGAATATGTTTTCAAGGAGGGCGAGAACTATAGAAAAGAAACTGCAATGAAGAAGCATACTTTATGTAAACACAAAACTAAAAGTGAAACTCTTATCAAACGGTCACGGACAATCTCAGTCACTTGAAACCAGTTATTACCAGATCATGCTCATTAACTAATACTTGCCACGTTCTGAGACATGATTACAAGCAAGGAGAGCCCTTCACGTTTACCCATACATGTACTGTAACAAATTCCATCTTGAATTTTATATTAAAAGACTGAAGAAAAGTTGGGGAAAGAAAACGAAAATCTAAATCATAAGCTTATAATATACGATACATCACCGTCCAAACATGCACCTGAAACGTATATATATATATATATTGATAGAATCACAGGCATCATTCTTGAAAAAACAGGGGAAAAACTACAGAAGCTTCAAATTGTGAACATGGTAACTCAATTAAGGGAAAACCCCATGTATCGAACTGAAATAACCAGCAGGACGTGTAAGGATAGAAGCACCTTAAGGCTTTCGACGACACCAGGAACGACCTCGTGCTCCAAACCAGAGTACTCACCCTCTGTATTCTCCCTAATCACAACAATATCGACATTCTCATGCCTGGTAGGAAGCCCAGGAAGATTAAAACAATTCACAAGCGACGCATAAAGATCAAGCTCTTTCCTCAGTTGCACATTCAACGAACTCACACCACCGCCAACAGGAGTCACCAATCCTCCCTTCAAACACACTTTATTTTTCTTAATCGAGTCAATTACTTCTTGGGGCACCTTCTTCATATCGCCATGAATCTCAAACTTCTCGAAATACAAAGGGGCGTGCATCGCATCCATGACTTGCTCCACGGCGCCAGTAACCAAGGGGCCAATTCCGTCTCCGGGAATCAAGGTAACGGCTCGGGGGGCGCCGTCTCCGGGTCGGGGCATGTAAGTGACGGATCGATTTTGAGCGTCGACTGTGGATTTGAAACATGA ATGACTGGCATCATTCTTGAAAAAACAGGGGAAAAACTACAGAAGCTTCAAATTGTGAACATGAAGCACCTTAAGGCTTTCGACGACACCAGGAACGACCTCGTGCTCCAAACCAGAGTACTCACCCTCTGTATTCTCCCTAATCACAACAATATCGACATTCTCATGCCTGGTAGGAAGCCCAGGAAGATTAAAACAATTCACAAGCGACGCATAAAGATCAAGCTCTTTCCTCAGTTGCACATTCAACGAACTCACACCACCGCCAACAGGAGTCACCAATCCTCCCTTCAAACACACTTTATTTTTCTTAATCGAGTCAATTACTTCTTGGGGCACCTTCTTCATATCGCCATGAATCTCAAACTTCTCGAAATACAAAGGGGCGTGCATCGCATCCATGACTTGCTCCACGGCGCCAGTAACCAAGGGGCCAATTCCGTCTCCGGGAATCAAGGTAACGGCTCGGGGGGCGCCGTCTCCGGGTCGGGGCATGTAAGTGACGGATCGATTTTGAGCGTCGACTGTGGATTTGAAACATGA ATGACTGGCATCATTCTTGAAAAAACAGGGGAAAAACTACAGAAGCTTCAAATTGTGAACATGAAGCACCTTAAGGCTTTCGACGACACCAGGAACGACCTCGTGCTCCAAACCAGAGTACTCACCCTCTGTATTCTCCCTAATCACAACAATATCGACATTCTCATGCCTGGTAGGAAGCCCAGGAAGATTAAAACAATTCACAAGCGACGCATAAAGATCAAGCTCTTTCCTCAGTTGCACATTCAACGAACTCACACCACCGCCAACAGGAGTCACCAATCCTCCCTTCAAACACACTTTATTTTTCTTAATCGAGTCAATTACTTCTTGGGGCACCTTCTTCATATCGCCATGAATCTCAAACTTCTCGAAATACAAAGGGGCGTGCATCGCATCCATGACTTGCTCCACGGCGCCAGTAACCAAGGGGCCAATTCCGTCTCCGGGAATCAAGGTAACGGCTCGGGGGGCGCCGTCTCCGGGTCGGGGCATGTAAGTGACGGATCGATTTTGAGCGTCGACTGTGGATTTGAAACATGA MTGIILEKTGEKLQKLQIVNMKHLKAFDDTRNDLVLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLFPQLHIQRTHTTANRSHQSSLQTHFIFLNRVNYFLGHLLHIAMNLKLLEIQRGVHRIHDLLHGASNQGANSVSGNQGNGSGGAVSGSGHVSDGSILSVDCGFET Homology
BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A7C8YSI6 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22 Identity = 60/117 (51.28%), Postives = 85/117 (72.65%), Query Frame = 0
BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A7J7HHX6 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009528 PE=4 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 4.2e-13 Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 0
BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A199UNI7 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_19469 PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 6.1e-12 Identity = 49/150 (32.67%), Postives = 93/150 (62.00%), Query Frame = 0
BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A4S8IEH1 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb09t06710 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 8.2e-09 Identity = 34/86 (39.53%), Postives = 60/86 (69.77%), Query Frame = 0
BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A2M3ZHK9 (Uncharacterized protein (Fragment) OS=Anopheles braziliensis OX=58242 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 2.5e-05 Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 0
BLAST of Lsi01G005390 vs. NCBI nr
Match: KAF5951584.1 (hypothetical protein HYC85_009528 [Camellia sinensis]) HSP 1 Score: 84.7 bits (208), Expect = 8.7e-13 Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 0
BLAST of Lsi01G005390 vs. NCBI nr
Match: OAY66319.1 (hypothetical protein ACMD2_19469 [Ananas comosus]) HSP 1 Score: 80.9 bits (198), Expect = 1.3e-11 Identity = 49/150 (32.67%), Postives = 93/150 (62.00%), Query Frame = 0
BLAST of Lsi01G005390 vs. NCBI nr
Match: THU46608.1 (hypothetical protein C4D60_Mb09t06710 [Musa balbisiana]) HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08 Identity = 34/86 (39.53%), Postives = 60/86 (69.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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