Lsi01G005390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G005390
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 4382799 .. 4384895 (-)
RNA-Seq ExpressionLsi01G005390
SyntenyLsi01G005390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGTTTTAGGAATTACATAATAAAGTGCTCAAATTCGACACCAGTTACTCTTGGTTCTAATCCTAGATATAAGCAAACAAAAATAAATATTACTATGTTTTTTGCTAACTTCAGTCATCATTCACACCAAAAGTCTCATTCCATGAAATATTGATTGTTTGTGTGGGGTTCGTTCTTCCAAATGCTCCAAGGCATATCTCAATCTTCCTATTTTCAAATTTGGATATATAGACATGGTAGAAAGTCCTTCACACAAGAAGCATGTATTAAGACCTTACAATGTCATTCAATTGTATAAGTGCATACCATAACATCAAATTGCTCAGGCTTTGAGACAAGTTGCATGCAGCAGTTGTCGACAATAACTTCGTTGTACTTTATTCCAGGATACTTTGTGGCAACCTCTCGACAAGATTCTAGAAATAGACCATCTGCAAGCTTCATGATATTTGCTTTGTGCACAGCTGTAACTTTCTTTCTGTTGTTCAGGTAAGCATACTCGAAAGCATATTTAGCAATGCGCTCAGAACAGAACTTTGTTATCACCTGGCAAAAGAGTGAGTATGAGAGACAAAGATACTAGGAAAAGGGGGGAAATCCTTATCATGTATTGAAGGTTAAAATTCTAAAAGACCTTCTTCTATTGATATGCTAAGCCACATAGTATTGGTGCGACAAAATACATATAACTAGTTACATCATACCAATGAGATGCCTACACTACAGCAGAGAAGGGTCTAGTCTAACATAACTACTCTTCTCATAACTCACAAAAACTGCTCAGAAACATTTTGAAGGAACTTCTCTCGTAAGGAGGAAAAAAGAAAAACCCTGAGAATTGCATGGTATCTACCAACTTCGAGATCTTAAAAATGTAGATGACCAAACCTAAAGACTGTCTAAAACATTAACGTCCCGTCTAATGGCCTTTTTCTAATTTTTGAAGATTAAGCTTATACAGAGTACTTCAACCTAACCTACCCATGTGTTTCTTGGCTTTGTTATGTAATATTAAGAATGTTTTTATAACCTAAGCCAAAATGTAAAAATCAAAAAACACAATTTAAACAAAAAAAATGTTTCTGTTTTTGAAACTTAGCAAATAATTTGAATATGTTTTCAAGGAGGGCGAGAACTATAGAAAAGAAACTGCAATGAAGAAGCATACTTTATGTAAACACAAAACTAAAAGTGAAACTCTTATCAAACGGTCACGGACAATCTCAGTCACTTGAAACCAGTTATTACCAGATCATGCTCATTAACTAATACTTGCCACGTTCTGAGACATGATTACAAGCAAGGAGAGCCCTTCACGTTTACCCATACATGTACTGTAACAAATTCCATCTTGAATTTTATATTAAAAGACTGAAGAAAAGTTGGGGAAAGAAAACGAAAATCTAAATCATAAGCTTATAATATACGATACATCACCGTCCAAACATGCACCTGAAACGTATATATATATATATATTGATAGAATCACAGGCATCATTCTTGAAAAAACAGGGGAAAAACTACAGAAGCTTCAAATTGTGAACATGGTAACTCAATTAAGGGAAAACCCCATGTATCGAACTGAAATAACCAGCAGGACGTGTAAGGATAGAAGCACCTTAAGGCTTTCGACGACACCAGGAACGACCTCGTGCTCCAAACCAGAGTACTCACCCTCTGTATTCTCCCTAATCACAACAATATCGACATTCTCATGCCTGGTAGGAAGCCCAGGAAGATTAAAACAATTCACAAGCGACGCATAAAGATCAAGCTCTTTCCTCAGTTGCACATTCAACGAACTCACACCACCGCCAACAGGAGTCACCAATCCTCCCTTCAAACACACTTTATTTTTCTTAATCGAGTCAATTACTTCTTGGGGCACCTTCTTCATATCGCCATGAATCTCAAACTTCTCGAAATACAAAGGGGCGTGCATCGCATCCATGACTTGCTCCACGGCGCCAGTAACCAAGGGGCCAATTCCGTCTCCGGGAATCAAGGTAACGGCTCGGGGGGCGCCGTCTCCGGGTCGGGGCATGTAAGTGACGGATCGATTTTGAGCGTCGACTGTGGATTTGAAACATGA

mRNA sequence

ATGACTGGCATCATTCTTGAAAAAACAGGGGAAAAACTACAGAAGCTTCAAATTGTGAACATGAAGCACCTTAAGGCTTTCGACGACACCAGGAACGACCTCGTGCTCCAAACCAGAGTACTCACCCTCTGTATTCTCCCTAATCACAACAATATCGACATTCTCATGCCTGGTAGGAAGCCCAGGAAGATTAAAACAATTCACAAGCGACGCATAAAGATCAAGCTCTTTCCTCAGTTGCACATTCAACGAACTCACACCACCGCCAACAGGAGTCACCAATCCTCCCTTCAAACACACTTTATTTTTCTTAATCGAGTCAATTACTTCTTGGGGCACCTTCTTCATATCGCCATGAATCTCAAACTTCTCGAAATACAAAGGGGCGTGCATCGCATCCATGACTTGCTCCACGGCGCCAGTAACCAAGGGGCCAATTCCGTCTCCGGGAATCAAGGTAACGGCTCGGGGGGCGCCGTCTCCGGGTCGGGGCATGTAAGTGACGGATCGATTTTGAGCGTCGACTGTGGATTTGAAACATGA

Coding sequence (CDS)

ATGACTGGCATCATTCTTGAAAAAACAGGGGAAAAACTACAGAAGCTTCAAATTGTGAACATGAAGCACCTTAAGGCTTTCGACGACACCAGGAACGACCTCGTGCTCCAAACCAGAGTACTCACCCTCTGTATTCTCCCTAATCACAACAATATCGACATTCTCATGCCTGGTAGGAAGCCCAGGAAGATTAAAACAATTCACAAGCGACGCATAAAGATCAAGCTCTTTCCTCAGTTGCACATTCAACGAACTCACACCACCGCCAACAGGAGTCACCAATCCTCCCTTCAAACACACTTTATTTTTCTTAATCGAGTCAATTACTTCTTGGGGCACCTTCTTCATATCGCCATGAATCTCAAACTTCTCGAAATACAAAGGGGCGTGCATCGCATCCATGACTTGCTCCACGGCGCCAGTAACCAAGGGGCCAATTCCGTCTCCGGGAATCAAGGTAACGGCTCGGGGGGCGCCGTCTCCGGGTCGGGGCATGTAAGTGACGGATCGATTTTGAGCGTCGACTGTGGATTTGAAACATGA

Protein sequence

MTGIILEKTGEKLQKLQIVNMKHLKAFDDTRNDLVLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLFPQLHIQRTHTTANRSHQSSLQTHFIFLNRVNYFLGHLLHIAMNLKLLEIQRGVHRIHDLLHGASNQGANSVSGNQGNGSGGAVSGSGHVSDGSILSVDCGFET
Homology
BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A7C8YSI6 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 60/117 (51.28%), Postives = 85/117 (72.65%), Query Frame = 0

Query: 35  VLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLFPQLHIQRTHTTANRSHQ 94
           +L+ RVL+L ILP H+NI +LMP  +P ++K I KR IKIKL PQLHIQR + T+NRS +
Sbjct: 1   MLKARVLSLSILPYHSNIHLLMPSGQPFEVKAIDKRSIKIKLLPQLHIQRANPTSNRSCE 60

Query: 95  SSLQTHFIFLNRVNYFLGHLLHIAMNLKLLEIQRGVHRIHDLLHGASNQGANSVSGN 152
           +SL+ H +    + +F  +LLH+ +NL LLE+ R VHR+H LL GAS+Q  +S++ N
Sbjct: 61  TSLEAHLVLSYGIQHFFWNLLHVTVNLILLEVHRRVHRLHHLLDGASDQRPDSIARN 117

BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A7J7HHX6 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009528 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-13
Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 18  IVNMKHLKAFDDTRNDLVLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLF 77
           ++  ++L+AF+    DL+L+ RVL L +LP  NNI+IL+  R+ R+I+ I K  I I+LF
Sbjct: 203 VIGRQYLEAFE----DLLLEARVLPLGVLPYLNNINILVASRQTRQIEAIDKGSITIELF 262

Query: 78  PQLHIQRTHTTANRSHQSSLQTHFIFLNRVNYFLGHLLHIAMNLKLLEIQRGVHRIHD 136
           P+L+++RTHTT + S +   Q   +  +R+++   H LH+AM++  L+   GV+  HD
Sbjct: 263 PELNVERTHTTTDWSLEPPFQGDLVLADRLDHLRRHALHVAMDIVALKEDWGVYCFHD 316

BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A199UNI7 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_19469 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.1e-12
Identity = 49/150 (32.67%), Postives = 93/150 (62.00%), Query Frame = 0

Query: 25  KAFDDTRNDLVLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLFPQLHIQR 84
           +A  D R+DLVL+TRVL L +LP+H+++D+L+   +  +++ + +R ++I+L  +L ++ 
Sbjct: 442 EALHDARDDLVLETRVLPLGVLPDHDDVDVLVARGQAGEVEAVDERGVEIELLAKLDVEG 501

Query: 85  THTTANRSHQSSLQTHFIFLNRVNYFLGHLLHIAMNLKLLEIQRGVHRIHDLLHGASNQG 144
               A+  ++++L+   +  +R++       H+A++L  LE+   VHR+H L  GA +QG
Sbjct: 502 ADAAADGGNEAALEADLVAADRLDDLRRDGGHVAVDLVGLEVHGRVHRLHHLPDGARHQG 561

Query: 145 ANSVSGNQGNGSGGAVSGSGHVSDGSILSV 175
           A++V+ +Q +    AV+G  HV  GS   V
Sbjct: 562 ADAVARDQRHRPRRAVAGPRHVGHGSAAPV 591

BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A4S8IEH1 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb09t06710 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.2e-09
Identity = 34/86 (39.53%), Postives = 60/86 (69.77%), Query Frame = 0

Query: 23  HLKAFDDTRNDLVLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLFPQLHI 82
           +L+   D RNDLVLQT VL L ILP+H+NI +LMPGR+  +++ + +RR++I+   QLH+
Sbjct: 137 YLETLHDARNDLVLQTGVLPLGILPDHHNIHLLMPGRQSLEVEAMDERRVEIEFPSQLHV 196

Query: 83  QRTHTTANRSHQSSLQTHFIFLNRVN 109
           +    +A+R  +++L+   +  +R++
Sbjct: 197 EGADPSAHRRPEAALEADLVHPDRLD 222

BLAST of Lsi01G005390 vs. ExPASy TrEMBL
Match: A0A2M3ZHK9 (Uncharacterized protein (Fragment) OS=Anopheles braziliensis OX=58242 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-05
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 0

Query: 24  LKAFDDTRNDLVLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLFPQLHIQ 83
           L A   T +DLVL  RVLTL +L + ++ID+++      +       R++++L  +  I+
Sbjct: 138 LDALHHTVDDLVLDARVLTLGVLADRHHIDVVVQRLVALEAAAWAYVRVQVELLAERQIK 197

Query: 84  RTHTTANRSHQSSLQTHFIFLNRVNYFLGHL-LHIAM----NLKLLEIQRGVHRIHDLLH 143
           R  T ANR HQ SLQTH + ++R++  L    L I +    ++    + R V    DLLH
Sbjct: 198 RAVTLANRRHQRSLQTHLVAVHRIDSTLRDTELAIGIPHRRHVDRFPLDRNVGDGEDLLH 257

Query: 144 GASNQGANSVSGNQGN 155
           G+ N   NS++ ++ N
Sbjct: 258 GSRNFRTNSIARDERN 273

BLAST of Lsi01G005390 vs. NCBI nr
Match: KAF5951584.1 (hypothetical protein HYC85_009528 [Camellia sinensis])

HSP 1 Score: 84.7 bits (208), Expect = 8.7e-13
Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 0

Query: 18  IVNMKHLKAFDDTRNDLVLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLF 77
           ++  ++L+AF+    DL+L+ RVL L +LP  NNI+IL+  R+ R+I+ I K  I I+LF
Sbjct: 203 VIGRQYLEAFE----DLLLEARVLPLGVLPYLNNINILVASRQTRQIEAIDKGSITIELF 262

Query: 78  PQLHIQRTHTTANRSHQSSLQTHFIFLNRVNYFLGHLLHIAMNLKLLEIQRGVHRIHD 136
           P+L+++RTHTT + S +   Q   +  +R+++   H LH+AM++  L+   GV+  HD
Sbjct: 263 PELNVERTHTTTDWSLEPPFQGDLVLADRLDHLRRHALHVAMDIVALKEDWGVYCFHD 316

BLAST of Lsi01G005390 vs. NCBI nr
Match: OAY66319.1 (hypothetical protein ACMD2_19469 [Ananas comosus])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-11
Identity = 49/150 (32.67%), Postives = 93/150 (62.00%), Query Frame = 0

Query: 25  KAFDDTRNDLVLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLFPQLHIQR 84
           +A  D R+DLVL+TRVL L +LP+H+++D+L+   +  +++ + +R ++I+L  +L ++ 
Sbjct: 442 EALHDARDDLVLETRVLPLGVLPDHDDVDVLVARGQAGEVEAVDERGVEIELLAKLDVEG 501

Query: 85  THTTANRSHQSSLQTHFIFLNRVNYFLGHLLHIAMNLKLLEIQRGVHRIHDLLHGASNQG 144
               A+  ++++L+   +  +R++       H+A++L  LE+   VHR+H L  GA +QG
Sbjct: 502 ADAAADGGNEAALEADLVAADRLDDLRRDGGHVAVDLVGLEVHGRVHRLHHLPDGARHQG 561

Query: 145 ANSVSGNQGNGSGGAVSGSGHVSDGSILSV 175
           A++V+ +Q +    AV+G  HV  GS   V
Sbjct: 562 ADAVARDQRHRPRRAVAGPRHVGHGSAAPV 591

BLAST of Lsi01G005390 vs. NCBI nr
Match: THU46608.1 (hypothetical protein C4D60_Mb09t06710 [Musa balbisiana])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 34/86 (39.53%), Postives = 60/86 (69.77%), Query Frame = 0

Query: 23  HLKAFDDTRNDLVLQTRVLTLCILPNHNNIDILMPGRKPRKIKTIHKRRIKIKLFPQLHI 82
           +L+   D RNDLVLQT VL L ILP+H+NI +LMPGR+  +++ + +RR++I+   QLH+
Sbjct: 137 YLETLHDARNDLVLQTGVLPLGILPDHHNIHLLMPGRQSLEVEAMDERRVEIEFPSQLHV 196

Query: 83  QRTHTTANRSHQSSLQTHFIFLNRVN 109
           +    +A+R  +++L+   +  +R++
Sbjct: 197 EGADPSAHRRPEAALEADLVHPDRLD 222

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7C8YSI61.3e-2251.28Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7J7HHX64.2e-1338.98Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009528 PE=4 SV=1[more]
A0A199UNI76.1e-1232.67Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_19469 PE=3 SV=1[more]
A0A4S8IEH18.2e-0939.53Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb09t06710 PE=4 SV=... [more]
A0A2M3ZHK92.5e-0533.09Uncharacterized protein (Fragment) OS=Anopheles braziliensis OX=58242 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAF5951584.18.7e-1338.98hypothetical protein HYC85_009528 [Camellia sinensis][more]
OAY66319.11.3e-1132.67hypothetical protein ACMD2_19469 [Ananas comosus][more]
THU46608.11.7e-0839.53hypothetical protein C4D60_Mb09t06710 [Musa balbisiana][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G005390.1Lsi01G005390.1mRNA