Lsi01G005290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G005290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RWP-RK domain-containing protein
Location	chr01: 4340875 .. 4342248 (-)
RNA-Seq Expression	Lsi01G005290
Synteny	Lsi01G005290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAACCACTTTTGGTTCATTCTTTATTCTCTAATTGGAGTTTTCTCCTCTTTAAAATTATCTTCTTAGTGCAACAAAAAAGAAGATCAAAGGACAGAATTGGTTTCTGTAAACAGCAGCTTCTATGTAAATCATCCTTCATCCCTTTGGAGGATAGGATAAGAGATAGGCTGCAAAGAGCTTCTAAGTTTTCACTGGTAATATTTCTAAGTTGGTTTTTTTCTCTTTTCATGAAAGTTTCTGGCACATGCAAGGTCTGAATCTGCTTTATGATCTCTCTATTGCTTCTCTTCGGTCCTGTTATTTCTGCAAACATCATTTGTTAGGTGATACAAATAGAGGTTTTTGATTCAGTACAGAACTTCAAAAAGTTGTAGATCAAATGAAGAATGCCCAAATGAAGAATGCCCATCTATCTTGTTTTTCCAAGGGAGAGTTATGTCAACTAAAGAATGGAAAATTTCATCAACCAAAAAACTTGCCTCTACTTGATCAGGACCTTAACTTCCTTCCTTGTTGTTCAGTTGCTGTATCTAAAAGTTCTGAGAATCAAATGAAAGAATCCTGTGAGCCAGGTTTGGCTTCAACTTTCTCTCTGTAAAGGAAATGTTTTGAACTTCTTTTTGAACAATTAGACCTAGGAGTTCATGTCCATATTATGAAAATTGACTAACCAGGTGGGGAAATTGCCAGTTATTGCAGAAAAGAAAAGGAGAGCAACAAGTGAGCACATTGCTGGAATTTCTTTATCAGATTTGGCTAAAAACTTTGGTGTTCCAATCACGGAAGCTTCAAGAAACCTAAATGTTGGATTAACAGTACTGAAAAGAAAATGCAGAGAATTCGGCATTCATCGGTGGCCGCACCGGAAGATAAAGTCCATTGATGGTCTAATTCAAGATCTTCAGGTTATTCCTTTCTTCCTACTTTGTATCTATAACTTCATTGCAACCTAGAAAGGCACATAGTTTGCTTATGGAAAAGGGTGTTTGTAGGAAGAAGCAAAGCATAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATTGAGAGGACACCATTTAGAGAGCTGGAGATTGAGACCAAGAGATTTAGGCAAGATGTTTTCAGGAGAAAGCATAAAGCCAGAGCTCTAGAAAGTCAGAGTCCATCAGTTTAGTTTGCAGCCATTAATAATTATATGCATAATATTGAACAAAATAAATAACTAGCAAAGTAGTATGCTACTTTTTAATCTCATCATGACATACCTGATAAGAAATCAAGACCTGTACCAGCAATTTTCATATGGAACTTCGGTTAAAAATGCTATTTTCAATCGATATTGTCTTTGAA

mRNA sequence

AAACAAACCACTTTTGGTTCATTCTTTATTCTCTAATTGGAGTTTTCTCCTCTTTAAAATTATCTTCTTAGTGCAACAAAAAAGAAGATCAAAGGACAGAATTGGTTTCTGTAAACAGCAGCTTCTATGTAAATCATCCTTCATCCCTTTGGAGGATAGGATAAGAGATAGGCTGCAAAGAGCTTCTAAGTTTTCACTGGTGATACAAATAGAGGTTTTTGATTCAGTACAGAACTTCAAAAAGTTGTAGATCAAATGAAGAATGCCCAAATGAAGAATGCCCATCTATCTTGTTTTTCCAAGGGAGAGTTATGTCAACTAAAGAATGGAAAATTTCATCAACCAAAAAACTTGCCTCTACTTGATCAGGACCTTAACTTCCTTCCTTGTTGTTCAGTTGCTGTATCTAAAAGTTCTGAGAATCAAATGAAAGAATCCTGTGAGCCAGAAAAGAAAAGGAGAGCAACAAGTGAGCACATTGCTGGAATTTCTTTATCAGATTTGGCTAAAAACTTTGGTGTTCCAATCACGGAAGCTTCAAGAAACCTAAATGTTGGATTAACAGTACTGAAAAGAAAATGCAGAGAATTCGGCATTCATCGGTGGCCGCACCGGAAGATAAAGTCCATTGATGGTCTAATTCAAGATCTTCAGGAAGAAGCAAAGCATAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATTGAGAGGACACCATTTAGAGAGCTGGAGATTGAGACCAAGAGATTTAGGCAAGATGTTTTCAGGAGAAAGCATAAAGCCAGAGCTCTAGAAAGTCAGAGTCCATCAGTTTAGTTTGCAGCCATTAATAATTATATGCATAATATTGAACAAAATAAATAACTAGCAAAGTAGTATGCTACTTTTTAATCTCATCATGACATACCTGATAAGAAATCAAGACCTGTACCAGCAATTTTCATATGGAACTTCGGTTAAAAATGCTATTTTCAATCGATATTGTCTTTGAA

Coding sequence (CDS)

ATGAAGAATGCCCAAATGAAGAATGCCCATCTATCTTGTTTTTCCAAGGGAGAGTTATGTCAACTAAAGAATGGAAAATTTCATCAACCAAAAAACTTGCCTCTACTTGATCAGGACCTTAACTTCCTTCCTTGTTGTTCAGTTGCTGTATCTAAAAGTTCTGAGAATCAAATGAAAGAATCCTGTGAGCCAGAAAAGAAAAGGAGAGCAACAAGTGAGCACATTGCTGGAATTTCTTTATCAGATTTGGCTAAAAACTTTGGTGTTCCAATCACGGAAGCTTCAAGAAACCTAAATGTTGGATTAACAGTACTGAAAAGAAAATGCAGAGAATTCGGCATTCATCGGTGGCCGCACCGGAAGATAAAGTCCATTGATGGTCTAATTCAAGATCTTCAGGAAGAAGCAAAGCATAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATTGAGAGGACACCATTTAGAGAGCTGGAGATTGAGACCAAGAGATTTAGGCAAGATGTTTTCAGGAGAAAGCATAAAGCCAGAGCTCTAGAAAGTCAGAGTCCATCAGTTTAG

Protein sequence

MKNAQMKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCEPEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

Homology

[Close]

BLAST of Lsi01G005290 vs. ExPASy Swiss-Prot
Match: O81791 (Protein RKD5 OS=Arabidopsis thaliana OX=3702 GN=RKD5 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-35
Identity = 94/195 (48.21%), Postives = 125/195 (64.10%), Query Frame = 0


Query: 24  NGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCEPE-----------------K 83
           N    +P+ L +L QDLN LP  S   S+ S N+  E  E E                 K
Sbjct: 173 NSDLPKPRKL-VLKQDLNCLP-DSETESEESVNEKTEHSEFENDKTEQSESDAKTEILKK 232

Query: 84  KRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSID 143
           K+R  S H+A +SL +L+K F + I EASRNL VGLTVLK+KCREFGI RWPHRKIKS+D
Sbjct: 233 KKRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSLD 292

Query: 144 GLIQDLQEEA-KHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRR 200
            LI DLQ EA K +E+++ A MAV K+Q  L+ E+ +I + PF E+ IETK+FRQ+ F++
Sbjct: 293 CLIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKK 352

[Close]

BLAST of Lsi01G005290 vs. ExPASy Swiss-Prot
Match: Q9M9U9 (Protein RKD1 OS=Arabidopsis thaliana OX=3702 GN=RKD1 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-17
Identity = 56/153 (36.60%), Postives = 87/153 (56.86%), Query Frame = 0


Query: 54  SENQMKESCEPEKKRRATSEHIAGISLS------DLAKNFGVPITEASRNLNVGLTVLKR 113
           S+   K      KKRR   E  +  S+S       ++  F +PIT+A+R LN+GLT+LK+
Sbjct: 98  SDFAKKSETTTTKKRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKK 157

Query: 114 KCREFGIHRWPHRKIKSIDGLIQDLQE-EAKHREEDQKALMAVTKRQMMLQNERESIERT 173
           +CRE GI RWPHRK+ S+  LI +++E E    EE++  L    ++   L+ E+++IE+ 
Sbjct: 158 RCRELGIKRWPHRKLMSLQKLISNVKELEKMEGEENEDKLRNALEK---LEKEKKTIEKL 217

Query: 174 PFRELEIETKRFRQDVFRRKHKARALESQSPSV 200
           P  + E +TKR RQ  F+  HK +     S  +
Sbjct: 218 PDLKFEDKTKRLRQACFKANHKRKRRSGMSTPI 247

[Close]

BLAST of Lsi01G005290 vs. ExPASy Swiss-Prot
Match: Q9CA66 (Protein RKD2 OS=Arabidopsis thaliana OX=3702 GN=RKD2 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-16
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 71  TSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQ 130
           TS     +S   +++ F +PIT+A+  LNVGLT+LKR+CRE GI RWPHRK+ S++ LI 
Sbjct: 128 TSSAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLIS 187

Query: 131 DLQEEAK-HREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKH-- 190
           +++E  K   EE+ + L    +   ML+ E+ +IE  P  E + +TKR RQ  F+  H  
Sbjct: 188 NVKELQKMEGEENAEKLQDALE---MLEKEKRTIEDLPDLEFKDKTKRLRQACFKANHKR 247

Query: 191 -KARALESQSPSV 200
            K R+L+S    V
Sbjct: 248 KKKRSLKSDQSQV 257

[Close]

BLAST of Lsi01G005290 vs. ExPASy Swiss-Prot
Match: Q9FGD1 (Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 56  NQMKESCEPEK---KRRATSEHIAGISLSDLAKN-FGVPITEASRNLNVGLTVLKRKCRE 115
           N MKE    ++   KRR   + +      ++ K  F +PIT+A++ LN+G+T+LK++CRE
Sbjct: 133 NTMKEKTSQKRIIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRE 192

Query: 116 FGIHRWPHRKIKSIDGLI---QDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPF 175
            GI RWPHRK+ S++ LI   +DL    K R    K   A+     +L+ E++ IE  P 
Sbjct: 193 LGIPRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALE----LLEMEKKMIEEVPD 252

Query: 176 RELEIETKRFRQDVFRRKHKARALESQS 197
            E   +TKR RQ  F+ K+K R L S S
Sbjct: 253 LEFGDKTKRLRQACFKAKYKRRRLFSSS 276

[Close]

BLAST of Lsi01G005290 vs. ExPASy Swiss-Prot
Match: Q9LVU8 (Protein RKD4 OS=Arabidopsis thaliana OX=3702 GN=RKD4 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-15
Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 56  NQMKESCEPEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIH 115
           N   E    +KKR    +    + +S++ + F  PI +A++ LNVGLTVLK++CRE GI+
Sbjct: 126 NVKVEKVTVKKKRNLKKKRQDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIY 185

Query: 116 RWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIET 175
           RWPHRK+KS++ LI++L+      EE+ K           L+  R  IE+ P  EL   T
Sbjct: 186 RWPHRKLKSLNSLIKNLKNVG--MEEEVK----------NLEEHRFLIEQEPDAELSDGT 245

Query: 176 KRFRQDVFRRKHKAR 191
           K+ RQ  F+  +K R
Sbjct: 246 KKLRQACFKANYKRR 248

[Close]

BLAST of Lsi01G005290 vs. ExPASy TrEMBL
Match: A0A5A7SHH9 (Protein RKD5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00600 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.7e-90
Identity = 177/198 (89.39%), Postives = 183/198 (92.42%), Query Frame = 0


Query: 6   MKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCE-- 65
           MKN HLSCF  GELCQLKNGK HQP+NLPLLDQDLNFLP CSV+VSK S NQM+ESC+  
Sbjct: 1   MKNPHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKGSGNQMEESCDES 60

Query: 66  --PEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 125
              EKKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK
Sbjct: 61  GIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 120

Query: 126 IKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQD 185
           IKSIDGLI+DLQEEAKHREED KALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQD
Sbjct: 121 IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELESETKRFRQD 180

Query: 186 VFRRKHKARALESQSPSV 200
           VFRRKHKARALESQSPSV
Sbjct: 181 VFRRKHKARALESQSPSV 197

[Close]

BLAST of Lsi01G005290 vs. ExPASy TrEMBL
Match: A0A1S4DTD9 (protein RKD5 OS=Cucumis melo OX=3656 GN=LOC103485193 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.7e-90
Identity = 177/198 (89.39%), Postives = 183/198 (92.42%), Query Frame = 0


Query: 6   MKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCE-- 65
           MKN HLSCF  GELCQLKNGK HQP+NLPLLDQDLNFLP CSV+VSK S NQM+ESC+  
Sbjct: 1   MKNPHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKGSGNQMEESCDES 60

Query: 66  --PEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 125
              EKKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK
Sbjct: 61  GIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 120

Query: 126 IKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQD 185
           IKSIDGLI+DLQEEAKHREED KALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQD
Sbjct: 121 IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELESETKRFRQD 180

Query: 186 VFRRKHKARALESQSPSV 200
           VFRRKHKARALESQSPSV
Sbjct: 181 VFRRKHKARALESQSPSV 197

[Close]

BLAST of Lsi01G005290 vs. ExPASy TrEMBL
Match: A0A0A0KGY8 (RWP-RK domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509650 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.8e-89
Identity = 176/197 (89.34%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 6   MKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCEP- 65
           MKN HLSCF  GELCQLKNGK HQP+NLPLLDQDLNFLP CSV+VSK S NQM+ESC   
Sbjct: 1   MKNGHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKESGNQMEESCASG 60

Query: 66  --EKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 125
             EKKRRATSEHIA I+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI
Sbjct: 61  IVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 120

Query: 126 KSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV 185
           KSIDGLI+DLQEEAKHREED KALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQDV
Sbjct: 121 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETKRFRQDV 180

Query: 186 FRRKHKARALESQSPSV 200
           FRRKHKARALESQSPSV
Sbjct: 181 FRRKHKARALESQSPSV 196

[Close]

BLAST of Lsi01G005290 vs. ExPASy TrEMBL
Match: A0A6J1BWV1 (protein RKD5 OS=Momordica charantia OX=3673 GN=LOC111005457 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.9e-75
Identity = 157/195 (80.51%), Postives = 167/195 (85.64%), Query Frame = 0


Query: 15  SKGELCQ--LKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCEP-------- 74
           S  E C   L NGKFHQP+NLPLL+QDLNFLP CS A S+ SENQMKES EP        
Sbjct: 4   SSNEECPSCLNNGKFHQPRNLPLLEQDLNFLP-CSAAASEGSENQMKESYEPGGELLVIA 63

Query: 75  EKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKS 134
           EKK+RATSEHIAGI+LSDLAK F +PITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKS
Sbjct: 64  EKKKRATSEHIAGITLSDLAKYFDLPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKS 123

Query: 135 IDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFR 194
           IDGLI+DLQEEAKHREED KALMAVTKRQ MLQ+ERESIE TPFRELE ET+RFRQDVFR
Sbjct: 124 IDGLIRDLQEEAKHREEDHKALMAVTKRQRMLQSERESIEMTPFRELETETRRFRQDVFR 183

Query: 195 RKHKARALESQSPSV 200
           R+HKARALESQ  SV
Sbjct: 184 RRHKARALESQGTSV 197

[Close]

BLAST of Lsi01G005290 vs. ExPASy TrEMBL
Match: A0A6J1GEC7 (protein RKD5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453407 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.0e-69
Identity = 153/197 (77.66%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 6   MKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPC-CSVAVSKSSE-NQMKESCE 65
           M +++LSCF K     L + KF        L QDLNFLPC  S+AVSK  E +QMKE CE
Sbjct: 17  MHDSYLSCFPK-----LNDEKF--------LHQDLNFLPCSSSMAVSKGPEIHQMKELCE 76

Query: 66  P---EKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHR 125
           P   +KKRRATSEHIAGI+LSDLAK F VPITEASR+LNVGLTVLKRKCREFGIHRWPHR
Sbjct: 77  PVLAKKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRKCREFGIHRWPHR 136

Query: 126 KIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQ 185
           KIKSIDGLI+DLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELE ETKRFRQ
Sbjct: 137 KIKSIDGLIRDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQ 196

Query: 186 DVFRRKHKARALESQSP 198
           DVF+R+HKARAL S SP
Sbjct: 197 DVFKRRHKARALVSHSP 200

[Close]

BLAST of Lsi01G005290 vs. NCBI nr
Match: XP_038882834.1 (protein RKD5 isoform X2 [Benincasa hispida])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 179/197 (90.86%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 6   MKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCEP- 65
           MKNAHLS F KGELCQLKN KFHQP+NLPLLDQDLNFLP CSVAVSK SE++MKE CEP 
Sbjct: 1   MKNAHLSYFPKGELCQLKNSKFHQPRNLPLLDQDLNFLP-CSVAVSKGSESEMKEFCEPV 60

Query: 66  --EKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 125
              KKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI
Sbjct: 61  IAAKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 120

Query: 126 KSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV 185
           KSIDGLI+DLQEEAKHRE+D KALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV
Sbjct: 121 KSIDGLIRDLQEEAKHREDDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV 180

Query: 186 FRRKHKARALESQSPSV 200
           FRRKHKARALESQS SV
Sbjct: 181 FRRKHKARALESQSSSV 196

[Close]

BLAST of Lsi01G005290 vs. NCBI nr
Match: XP_038882831.1 (protein RKD5 isoform X1 [Benincasa hispida] >XP_038882832.1 protein RKD5 isoform X1 [Benincasa hispida] >XP_038882833.1 protein RKD5 isoform X1 [Benincasa hispida])

HSP 1 Score: 341.3 bits (874), Expect = 5.7e-90
Identity = 179/202 (88.61%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 6   MKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCEP- 65
           MKNAHLS F KGELCQLKN KFHQP+NLPLLDQDLNFLP CSVAVSK SE++MKE CEP 
Sbjct: 1   MKNAHLSYFPKGELCQLKNSKFHQPRNLPLLDQDLNFLP-CSVAVSKGSESEMKEFCEPG 60

Query: 66  -------EKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW 125
                   KKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW
Sbjct: 61  GELPVIAAKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW 120

Query: 126 PHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKR 185
           PHRKIKSIDGLI+DLQEEAKHRE+D KALMAVTKRQMMLQNERESIERTPFRELEIETKR
Sbjct: 121 PHRKIKSIDGLIRDLQEEAKHREDDHKALMAVTKRQMMLQNERESIERTPFRELEIETKR 180

Query: 186 FRQDVFRRKHKARALESQSPSV 200
           FRQDVFRRKHKARALESQS SV
Sbjct: 181 FRQDVFRRKHKARALESQSSSV 201

[Close]

BLAST of Lsi01G005290 vs. NCBI nr
Match: XP_016899254.1 (PREDICTED: protein RKD5 [Cucumis melo] >KAA0025608.1 protein RKD5 [Cucumis melo var. makuwa] >TYK12483.1 protein RKD5 [Cucumis melo var. makuwa])

HSP 1 Score: 340.5 bits (872), Expect = 9.8e-90
Identity = 177/198 (89.39%), Postives = 183/198 (92.42%), Query Frame = 0


Query: 6   MKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCE-- 65
           MKN HLSCF  GELCQLKNGK HQP+NLPLLDQDLNFLP CSV+VSK S NQM+ESC+  
Sbjct: 1   MKNPHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKGSGNQMEESCDES 60

Query: 66  --PEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 125
              EKKRRATSEHIAGI+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK
Sbjct: 61  GIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 120

Query: 126 IKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQD 185
           IKSIDGLI+DLQEEAKHREED KALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQD
Sbjct: 121 IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELESETKRFRQD 180

Query: 186 VFRRKHKARALESQSPSV 200
           VFRRKHKARALESQSPSV
Sbjct: 181 VFRRKHKARALESQSPSV 197

[Close]

BLAST of Lsi01G005290 vs. NCBI nr
Match: XP_004134999.1 (protein RKD5 isoform X2 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 1.4e-88
Identity = 176/197 (89.34%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 6   MKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCEP- 65
           MKN HLSCF  GELCQLKNGK HQP+NLPLLDQDLNFLP CSV+VSK S NQM+ESC   
Sbjct: 1   MKNGHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKESGNQMEESCASG 60

Query: 66  --EKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 125
             EKKRRATSEHIA I+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI
Sbjct: 61  IVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 120

Query: 126 KSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV 185
           KSIDGLI+DLQEEAKHREED KALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQDV
Sbjct: 121 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETKRFRQDV 180

Query: 186 FRRKHKARALESQSPSV 200
           FRRKHKARALESQSPSV
Sbjct: 181 FRRKHKARALESQSPSV 196

[Close]

BLAST of Lsi01G005290 vs. NCBI nr
Match: XP_011658076.1 (protein RKD5 isoform X1 [Cucumis sativus] >KAE8647629.1 hypothetical protein Csa_003920 [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 5.4e-88
Identity = 176/202 (87.13%), Postives = 181/202 (89.60%), Query Frame = 0


Query: 6   MKNAHLSCFSKGELCQLKNGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCEP- 65
           MKN HLSCF  GELCQLKNGK HQP+NLPLLDQDLNFLP CSV+VSK S NQM+ESC   
Sbjct: 1   MKNGHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKESGNQMEESCASG 60

Query: 66  -------EKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW 125
                  EKKRRATSEHIA I+LSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW
Sbjct: 61  GELIGIVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW 120

Query: 126 PHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKR 185
           PHRKIKSIDGLI+DLQEEAKHREED KALMAVTKRQMMLQNERE IERTPFRELE ETKR
Sbjct: 121 PHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETKR 180

Query: 186 FRQDVFRRKHKARALESQSPSV 200
           FRQDVFRRKHKARALESQSPSV
Sbjct: 181 FRQDVFRRKHKARALESQSPSV 201

[Close]

BLAST of Lsi01G005290 vs. TAIR 10
Match: AT4G35590.1 (RWP-RK domain-containing protein )

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-36
Identity = 94/195 (48.21%), Postives = 125/195 (64.10%), Query Frame = 0


Query: 24  NGKFHQPKNLPLLDQDLNFLPCCSVAVSKSSENQMKESCEPE-----------------K 83
           N    +P+ L +L QDLN LP  S   S+ S N+  E  E E                 K
Sbjct: 173 NSDLPKPRKL-VLKQDLNCLP-DSETESEESVNEKTEHSEFENDKTEQSESDAKTEILKK 232

Query: 84  KRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSID 143
           K+R  S H+A +SL +L+K F + I EASRNL VGLTVLK+KCREFGI RWPHRKIKS+D
Sbjct: 233 KKRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSLD 292

Query: 144 GLIQDLQEEA-KHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRR 200
            LI DLQ EA K +E+++ A MAV K+Q  L+ E+ +I + PF E+ IETK+FRQ+ F++
Sbjct: 293 CLIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKK 352

[Close]

BLAST of Lsi01G005290 vs. TAIR 10
Match: AT1G18790.1 (RWP-RK domain-containing protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 56/153 (36.60%), Postives = 87/153 (56.86%), Query Frame = 0


Query: 54  SENQMKESCEPEKKRRATSEHIAGISLS------DLAKNFGVPITEASRNLNVGLTVLKR 113
           S+   K      KKRR   E  +  S+S       ++  F +PIT+A+R LN+GLT+LK+
Sbjct: 98  SDFAKKSETTTTKKRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKK 157

Query: 114 KCREFGIHRWPHRKIKSIDGLIQDLQE-EAKHREEDQKALMAVTKRQMMLQNERESIERT 173
           +CRE GI RWPHRK+ S+  LI +++E E    EE++  L    ++   L+ E+++IE+ 
Sbjct: 158 RCRELGIKRWPHRKLMSLQKLISNVKELEKMEGEENEDKLRNALEK---LEKEKKTIEKL 217

Query: 174 PFRELEIETKRFRQDVFRRKHKARALESQSPSV 200
           P  + E +TKR RQ  F+  HK +     S  +
Sbjct: 218 PDLKFEDKTKRLRQACFKANHKRKRRSGMSTPI 247

[Close]

BLAST of Lsi01G005290 vs. TAIR 10
Match: AT1G74480.1 (RWP-RK domain-containing protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-17
Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 71  TSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIQ 130
           TS     +S   +++ F +PIT+A+  LNVGLT+LKR+CRE GI RWPHRK+ S++ LI 
Sbjct: 128 TSSAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLIS 187

Query: 131 DLQEEAK-HREEDQKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKH-- 190
           +++E  K   EE+ + L    +   ML+ E+ +IE  P  E + +TKR RQ  F+  H  
Sbjct: 188 NVKELQKMEGEENAEKLQDALE---MLEKEKRTIEDLPDLEFKDKTKRLRQACFKANHKR 247

Query: 191 -KARALESQSPSV 200
            K R+L+S    V
Sbjct: 248 KKKRSLKSDQSQV 257

[Close]

BLAST of Lsi01G005290 vs. TAIR 10
Match: AT5G66990.1 (RWP-RK domain-containing protein )

HSP 1 Score: 84.7 bits (208), Expect = 9.0e-17
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 56  NQMKESCEPEK---KRRATSEHIAGISLSDLAKN-FGVPITEASRNLNVGLTVLKRKCRE 115
           N MKE    ++   KRR   + +      ++ K  F +PIT+A++ LN+G+T+LK++CRE
Sbjct: 133 NTMKEKTSQKRIIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRE 192

Query: 116 FGIHRWPHRKIKSIDGLI---QDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPF 175
            GI RWPHRK+ S++ LI   +DL    K R    K   A+     +L+ E++ IE  P 
Sbjct: 193 LGIPRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALE----LLEMEKKMIEEVPD 252

Query: 176 RELEIETKRFRQDVFRRKHKARALESQS 197
            E   +TKR RQ  F+ K+K R L S S
Sbjct: 253 LEFGDKTKRLRQACFKAKYKRRRLFSSS 276

[Close]

BLAST of Lsi01G005290 vs. TAIR 10
Match: AT5G53040.1 (RWP-RK domain-containing protein )

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-16
Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 56  NQMKESCEPEKKRRATSEHIAGISLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIH 115
           N   E    +KKR    +    + +S++ + F  PI +A++ LNVGLTVLK++CRE GI+
Sbjct: 126 NVKVEKVTVKKKRNLKKKRQDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIY 185

Query: 116 RWPHRKIKSIDGLIQDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELEIET 175
           RWPHRK+KS++ LI++L+      EE+ K           L+  R  IE+ P  EL   T
Sbjct: 186 RWPHRKLKSLNSLIKNLKNVG--MEEEVK----------NLEEHRFLIEQEPDAELSDGT 245

Query: 176 KRFRQDVFRRKHKAR 191
           K+ RQ  F+  +K R
Sbjct: 246 KKLRQACFKANYKRR 248

The following BLAST results are available for this feature:

BLAST of Lsi01G005290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81791	2.5e-35	48.21	Protein RKD5 OS=Arabidopsis thaliana OX=3702 GN=RKD5 PE=3 SV=1	[more]
Q9M9U9	2.3e-17	36.60	Protein RKD1 OS=Arabidopsis thaliana OX=3702 GN=RKD1 PE=3 SV=1	[more]
Q9CA66	2.0e-16	41.35	Protein RKD2 OS=Arabidopsis thaliana OX=3702 GN=RKD2 PE=2 SV=1	[more]
Q9FGD1	1.3e-15	38.51	Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1	[more]
Q9LVU8	4.8e-15	38.52	Protein RKD4 OS=Arabidopsis thaliana OX=3702 GN=RKD4 PE=3 SV=1	[more]

BLAST of Lsi01G005290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHH9	4.7e-90	89.39	Protein RKD5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00600 P...	[more]
A0A1S4DTD9	4.7e-90	89.39	protein RKD5 OS=Cucumis melo OX=3656 GN=LOC103485193 PE=4 SV=1	[more]
A0A0A0KGY8	6.8e-89	89.34	RWP-RK domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509650 PE=4...	[more]
A0A6J1BWV1	1.9e-75	80.51	protein RKD5 OS=Momordica charantia OX=3673 GN=LOC111005457 PE=4 SV=1	[more]
A0A6J1GEC7	6.0e-69	77.66	protein RKD5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453407 PE=4 ...	[more]

BLAST of Lsi01G005290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882834.1	1.5e-90	90.86	protein RKD5 isoform X2 [Benincasa hispida]	[more]
XP_038882831.1	5.7e-90	88.61	protein RKD5 isoform X1 [Benincasa hispida] >XP_038882832.1 protein RKD5 isoform...	[more]
XP_016899254.1	9.8e-90	89.39	PREDICTED: protein RKD5 [Cucumis melo] >KAA0025608.1 protein RKD5 [Cucumis melo ...	[more]
XP_004134999.1	1.4e-88	89.34	protein RKD5 isoform X2 [Cucumis sativus]	[more]
XP_011658076.1	5.4e-88	87.13	protein RKD5 isoform X1 [Cucumis sativus] >KAE8647629.1 hypothetical protein Csa...	[more]

BLAST of Lsi01G005290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35590.1	1.7e-36	48.21	RWP-RK domain-containing protein	[more]
AT1G18790.1	1.6e-18	36.60	RWP-RK domain-containing protein	[more]
AT1G74480.1	1.4e-17	41.35	RWP-RK domain-containing protein	[more]
AT5G66990.1	9.0e-17	38.51	RWP-RK domain-containing protein	[more]
AT5G53040.1	3.4e-16	38.52	RWP-RK domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003035	RWP-RK domain	PFAM	PF02042	RWP-RK	coord: 78..125 e-value: 4.8E-21 score: 74.5
IPR003035	RWP-RK domain	PROSITE	PS51519	RWP_RK	coord: 61..145 score: 17.961838
IPR044607	Transcription factor RKD-like	PANTHER	PTHR46373	PROTEIN RKD4	coord: 35..195
None	No IPR available	PANTHER	PTHR46373:SF12	PROTEIN RKD5	coord: 35..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G005290.1	Lsi01G005290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity