Lsi01G004960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G004960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 4074598 .. 4075023 (-)
RNA-Seq ExpressionLsi01G004960
SyntenyLsi01G004960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

mRNA sequence

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

Coding sequence (CDS)

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

Protein sequence

MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
Homology
BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match: A0A0A0KHP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 116/143 (81.12%), Postives = 120/143 (83.92%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAV--L 60
           MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE  A          +QAFTTSSAV   
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  EVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDS 120
           EVEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLELILRKSK+ GSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPEVRNY 142
           F+VDD CPRW PALPTIPEVRNY
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136

BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match: A0A5D3CLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00250 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.0e-54
Identity = 112/141 (79.43%), Postives = 117/141 (82.98%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEV 60
           MGNCINT HFPPLQKIKGFICCEVE L+L LPI   A  AY   K  SQAFTTSSAV EV
Sbjct: 1   MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVA--AYGDCK--SQAFTTSSAVAEV 60

Query: 61  EHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFE 120
           +H PPPLPVRID S + PAD  KLPKATIVVSKQQLELILRKSK+ GSKGIAVQFSD F+
Sbjct: 61  QHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFK 120

Query: 121 VDDRCPRWRPALPTIPEVRNY 142
           VDD CPRW PALPTIPEVRNY
Sbjct: 121 VDDGCPRWHPALPTIPEVRNY 137

BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match: A0A5N5M953 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.1e-12
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTS----S 60
           MGNCI+       ++ K  I    E +   + P++K  +G Y G  L ++A   +     
Sbjct: 1   MGNCIDFMPCSSGERSKVLIHNGGEKEFKSSTPVKKITSGRYGGYILVNRALPYAPLPPD 60

Query: 61  AVL---EVEHGPPPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
            VL   EV H  PPL  P R++  S +   + C   K  IVV++QQLEL+LR SK +  +
Sbjct: 61  TVLEPGEVYHLMPPLDQPSRLEVSSKLTGQEACAGRKVKIVVTRQQLELLLRNSKQLKLR 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEV 139
           GIAVQFS+SF+   R  +W+P+L TIPEV
Sbjct: 121 GIAVQFSESFKEGKR--KWQPSLVTIPEV 147

BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match: B9HD50 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE 60
           MGNCI+   +   ++ K  I    E +   +  ++K  +G Y G  L   A        +
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VEHGP-------PPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
               P       P L  P R++  S +   + C   K  IVV++QQLEL+LR SK   SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEV+ +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match: A0A6A1W907 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 50/157 (31.85%), Postives = 74/157 (47.13%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAV-- 60
           MGNC +    P  +KI+  +  E E + +   P+EK   G Y G KL   +   S  +  
Sbjct: 1   MGNCADVMLRPTEEKIRVLVFNEGEKEFSARTPVEKITCGPYSGFKLVHHSQPDSPLLPD 60

Query: 61  -------------LEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSK 120
                        L+ +   PP+P R  +      +  K  K  IVV+K QLEL+LR + 
Sbjct: 61  ARLQPGELYYLVPLQAQPHHPPIPSRTANQ-----ETGKQKKVKIVVTKGQLELLLRSTD 120

Query: 121 DIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
              SK IA+    SF+V +   +WRP+L  IPEV ++
Sbjct: 121 KFKSKDIAIHCLGSFQVGEGRRKWRPSLTMIPEVHSF 152

BLAST of Lsi01G004960 vs. NCBI nr
Match: KAE8647639.1 (hypothetical protein Csa_004428 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54
Identity = 112/139 (80.58%), Postives = 116/139 (83.45%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAV--L 60
           MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE  A          +QAFTTSSAV   
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  EVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDS 120
           EVEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLELILRKSK+ GSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPE 138
           F+VDD CPRW PALPTIPE
Sbjct: 121 FKVDDGCPRWHPALPTIPE 132

BLAST of Lsi01G004960 vs. NCBI nr
Match: KAA0025575.1 (hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK12450.1 hypothetical protein E5676_scaffold255G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54
Identity = 112/141 (79.43%), Postives = 117/141 (82.98%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEV 60
           MGNCINT HFPPLQKIKGFICCEVE L+L LPI   A  AY   K  SQAFTTSSAV EV
Sbjct: 1   MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVA--AYGDCK--SQAFTTSSAVAEV 60

Query: 61  EHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFE 120
           +H PPPLPVRID S + PAD  KLPKATIVVSKQQLELILRKSK+ GSKGIAVQFSD F+
Sbjct: 61  QHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFK 120

Query: 121 VDDRCPRWRPALPTIPEVRNY 142
           VDD CPRW PALPTIPEVRNY
Sbjct: 121 VDDGCPRWHPALPTIPEVRNY 137

BLAST of Lsi01G004960 vs. NCBI nr
Match: KAG6603830.1 (hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 6.1e-46
Identity = 103/144 (71.53%), Postives = 109/144 (75.69%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEV 60
           MGNCINT HF PLQK+K  ICCE EDL+LALPIEK A+GAY          TTSSAVLEV
Sbjct: 1   MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIASGAY----------TTSSAVLEV 60

Query: 61  EHGPPPLPVRI--DDSFINPADLCKLPK-ATIVVSKQQLELILRKSKDIGSKGIAVQFSD 120
           + G PPLPV I  DD+   P  LCKLPK  TIVVSKQQLELILR S+   SKGIAVQFSD
Sbjct: 61  DRGAPPLPVSIDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSD 120

Query: 121 SFEVDDRCPRWRPALPTIPEVRNY 142
           SFEVDDRCPRW PALPTI EV NY
Sbjct: 121 SFEVDDRCPRWCPALPTILEVHNY 134

BLAST of Lsi01G004960 vs. NCBI nr
Match: KAG6594706.1 (hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-24
Identity = 76/145 (52.41%), Postives = 86/145 (59.31%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEV 60
           MGNCI++PH                  +LA+P+EK A     GLKLT       SAVLEV
Sbjct: 1   MGNCISSPHL----------------YDLAVPVEKIA-----GLKLT-------SAVLEV 60

Query: 61  EHG--PPPLPVRI--DDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFS 120
             G   PP  V I  DD    PA LCKLPKATIVVSK+QLE +L  S+  GS+GIAVQFS
Sbjct: 61  GRGAATPPAHVLIDDDDDITKPAALCKLPKATIVVSKEQLEFLLTNSQQFGSQGIAVQFS 117

Query: 121 DSFEVDDRCPRWRPALPTIPEVRNY 142
           DSF+ D  C RW P LPTI EV NY
Sbjct: 121 DSFKFDRSCSRWCPVLPTILEVHNY 117

BLAST of Lsi01G004960 vs. NCBI nr
Match: KAF9851460.1 (hypothetical protein H0E87_015599 [Populus deltoides])

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-13
Identity = 58/152 (38.16%), Postives = 81/152 (53.29%), Query Frame = 0

Query: 1   MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAF-------T 60
           MGNCI+   +   ++ K  I    E +   +  ++K  +G Y G  L   A         
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVQKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  TSSAVLEVEHGPPPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
           T     EV H  P L  P R++  S +   + C   K  IVV++QQLEL+LR SK   SK
Sbjct: 61  TRLEPGEVYHLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEVR +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVRKF 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KHP31.7e-5781.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1[more]
A0A5D3CLY81.0e-5479.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5N5M9538.1e-1238.93Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1[more]
B9HD502.4e-1135.53Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 ... [more]
A0A6A1W9073.4e-1031.85Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8647639.12.1e-5480.58hypothetical protein Csa_004428 [Cucumis sativus][more]
KAA0025575.12.1e-5479.43hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK1245... [more]
KAG6603830.16.1e-4671.53hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6594706.11.7e-2452.41hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF9851460.16.8e-1338.16hypothetical protein H0E87_015599 [Populus deltoides][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 1..140
NoneNo IPR availablePANTHERPTHR33148:SF50SUBFAMILY NOT NAMEDcoord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004960.1Lsi01G004960.1mRNA