Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG
mRNA sequence
ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG
Coding sequence (CDS)
ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG
Protein sequence
MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
Homology
BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match:
A0A0A0KHP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)
HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 116/143 (81.12%), Postives = 120/143 (83.92%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAV--L 60
MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE A +QAFTTSSAV
Sbjct: 1 MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60
Query: 61 EVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDS 120
EVEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLELILRKSK+ GSKGIAVQFSDS
Sbjct: 61 EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120
Query: 121 FEVDDRCPRWRPALPTIPEVRNY 142
F+VDD CPRW PALPTIPEVRNY
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136
BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match:
A0A5D3CLY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00250 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 1.0e-54
Identity = 112/141 (79.43%), Postives = 117/141 (82.98%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEV 60
MGNCINT HFPPLQKIKGFICCEVE L+L LPI A AY K SQAFTTSSAV EV
Sbjct: 1 MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVA--AYGDCK--SQAFTTSSAVAEV 60
Query: 61 EHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFE 120
+H PPPLPVRID S + PAD KLPKATIVVSKQQLELILRKSK+ GSKGIAVQFSD F+
Sbjct: 61 QHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFK 120
Query: 121 VDDRCPRWRPALPTIPEVRNY 142
VDD CPRW PALPTIPEVRNY
Sbjct: 121 VDDGCPRWHPALPTIPEVRNY 137
BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match:
A0A5N5M953 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 8.1e-12
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTS----S 60
MGNCI+ ++ K I E + + P++K +G Y G L ++A +
Sbjct: 1 MGNCIDFMPCSSGERSKVLIHNGGEKEFKSSTPVKKITSGRYGGYILVNRALPYAPLPPD 60
Query: 61 AVL---EVEHGPPPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
VL EV H PPL P R++ S + + C K IVV++QQLEL+LR SK + +
Sbjct: 61 TVLEPGEVYHLMPPLDQPSRLEVSSKLTGQEACAGRKVKIVVTRQQLELLLRNSKQLKLR 120
Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEV 139
GIAVQFS+SF+ R +W+P+L TIPEV
Sbjct: 121 GIAVQFSESFKEGKR--KWQPSLVTIPEV 147
BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match:
B9HD50 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 SV=1)
HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE 60
MGNCI+ + ++ K I E + + ++K +G Y G L A +
Sbjct: 1 MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60
Query: 61 VEHGP-------PPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
P P L P R++ S + + C K IVV++QQLEL+LR SK SK
Sbjct: 61 TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120
Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
GIAV+FS+SF+ +R +WRP+L TIPEV+ +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150
BLAST of Lsi01G004960 vs. ExPASy TrEMBL
Match:
A0A6A1W907 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1)
HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 50/157 (31.85%), Postives = 74/157 (47.13%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAV-- 60
MGNC + P +KI+ + E E + + P+EK G Y G KL + S +
Sbjct: 1 MGNCADVMLRPTEEKIRVLVFNEGEKEFSARTPVEKITCGPYSGFKLVHHSQPDSPLLPD 60
Query: 61 -------------LEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSK 120
L+ + PP+P R + + K K IVV+K QLEL+LR +
Sbjct: 61 ARLQPGELYYLVPLQAQPHHPPIPSRTANQ-----ETGKQKKVKIVVTKGQLELLLRSTD 120
Query: 121 DIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
SK IA+ SF+V + +WRP+L IPEV ++
Sbjct: 121 KFKSKDIAIHCLGSFQVGEGRRKWRPSLTMIPEVHSF 152
BLAST of Lsi01G004960 vs. NCBI nr
Match:
KAE8647639.1 (hypothetical protein Csa_004428 [Cucumis sativus])
HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54
Identity = 112/139 (80.58%), Postives = 116/139 (83.45%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAV--L 60
MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE A +QAFTTSSAV
Sbjct: 1 MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60
Query: 61 EVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDS 120
EVEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLELILRKSK+ GSKGIAVQFSDS
Sbjct: 61 EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120
Query: 121 FEVDDRCPRWRPALPTIPE 138
F+VDD CPRW PALPTIPE
Sbjct: 121 FKVDDGCPRWHPALPTIPE 132
BLAST of Lsi01G004960 vs. NCBI nr
Match:
KAA0025575.1 (hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK12450.1 hypothetical protein E5676_scaffold255G00250 [Cucumis melo var. makuwa])
HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54
Identity = 112/141 (79.43%), Postives = 117/141 (82.98%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEV 60
MGNCINT HFPPLQKIKGFICCEVE L+L LPI A AY K SQAFTTSSAV EV
Sbjct: 1 MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVA--AYGDCK--SQAFTTSSAVAEV 60
Query: 61 EHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFE 120
+H PPPLPVRID S + PAD KLPKATIVVSKQQLELILRKSK+ GSKGIAVQFSD F+
Sbjct: 61 QHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFK 120
Query: 121 VDDRCPRWRPALPTIPEVRNY 142
VDD CPRW PALPTIPEVRNY
Sbjct: 121 VDDGCPRWHPALPTIPEVRNY 137
BLAST of Lsi01G004960 vs. NCBI nr
Match:
KAG6603830.1 (hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 194.5 bits (493), Expect = 6.1e-46
Identity = 103/144 (71.53%), Postives = 109/144 (75.69%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEV 60
MGNCINT HF PLQK+K ICCE EDL+LALPIEK A+GAY TTSSAVLEV
Sbjct: 1 MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIASGAY----------TTSSAVLEV 60
Query: 61 EHGPPPLPVRI--DDSFINPADLCKLPK-ATIVVSKQQLELILRKSKDIGSKGIAVQFSD 120
+ G PPLPV I DD+ P LCKLPK TIVVSKQQLELILR S+ SKGIAVQFSD
Sbjct: 61 DRGAPPLPVSIDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSD 120
Query: 121 SFEVDDRCPRWRPALPTIPEVRNY 142
SFEVDDRCPRW PALPTI EV NY
Sbjct: 121 SFEVDDRCPRWCPALPTILEVHNY 134
BLAST of Lsi01G004960 vs. NCBI nr
Match:
KAG6594706.1 (hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 123.2 bits (308), Expect = 1.7e-24
Identity = 76/145 (52.41%), Postives = 86/145 (59.31%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEV 60
MGNCI++PH +LA+P+EK A GLKLT SAVLEV
Sbjct: 1 MGNCISSPHL----------------YDLAVPVEKIA-----GLKLT-------SAVLEV 60
Query: 61 EHG--PPPLPVRI--DDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFS 120
G PP V I DD PA LCKLPKATIVVSK+QLE +L S+ GS+GIAVQFS
Sbjct: 61 GRGAATPPAHVLIDDDDDITKPAALCKLPKATIVVSKEQLEFLLTNSQQFGSQGIAVQFS 117
Query: 121 DSFEVDDRCPRWRPALPTIPEVRNY 142
DSF+ D C RW P LPTI EV NY
Sbjct: 121 DSFKFDRSCSRWCPVLPTILEVHNY 117
BLAST of Lsi01G004960 vs. NCBI nr
Match:
KAF9851460.1 (hypothetical protein H0E87_015599 [Populus deltoides])
HSP 1 Score: 84.7 bits (208), Expect = 6.8e-13
Identity = 58/152 (38.16%), Postives = 81/152 (53.29%), Query Frame = 0
Query: 1 MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAF-------T 60
MGNCI+ + ++ K I E + + ++K +G Y G L A
Sbjct: 1 MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVQKITSGRYGGYMLVHSALPYVPLPPD 60
Query: 61 TSSAVLEVEHGPPPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
T EV H P L P R++ S + + C K IVV++QQLEL+LR SK SK
Sbjct: 61 TRLEPGEVYHLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120
Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
GIAV+FS+SF+ +R +WRP+L TIPEVR +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVRKF 150
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KHP3 | 1.7e-57 | 81.12 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1 | [more] |
A0A5D3CLY8 | 1.0e-54 | 79.43 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5N5M953 | 8.1e-12 | 38.93 | Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008876 PE=4 SV=1 | [more] |
B9HD50 | 2.4e-11 | 35.53 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200 PE=4 ... | [more] |
A0A6A1W907 | 3.4e-10 | 31.85 | Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G006267 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAE8647639.1 | 2.1e-54 | 80.58 | hypothetical protein Csa_004428 [Cucumis sativus] | [more] |
KAA0025575.1 | 2.1e-54 | 79.43 | hypothetical protein E6C27_scaffold253G00640 [Cucumis melo var. makuwa] >TYK1245... | [more] |
KAG6603830.1 | 6.1e-46 | 71.53 | hypothetical protein SDJN03_04439, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6594706.1 | 1.7e-24 | 52.41 | hypothetical protein SDJN03_11259, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAF9851460.1 | 6.8e-13 | 38.16 | hypothetical protein H0E87_015599 [Populus deltoides] | [more] |
Match Name | E-value | Identity | Description | |