Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGGAAGATATTATTAGAAAGAATGATGATCAAGAGGCATCTCATGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTTGAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGGTTGTGAAATTGCTATCTCTTTCTCAATACCCTAAAACTCATAGCTGCTGCAGCTTCTTCTTCAATAATAATACAAATACTTGTGTCCTTTTTGAGCCTTCTTCAATTTCACATCCTCATCATGATCAGTTAATGATGATGAAGAAGAAGAAGAAGATGATGATCAAGGTACCACCAACAATGTTAACATTGCTGCCTCAAACTTCTTTATCTCTCTCCTTAACTTCTTCTTCTTCAAATCATCAACCCAACAATAATAATATCCCAACTTTGATGGACTTATGGCCACTCCCTACAACTTCTTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATCATCATGATTACTCTGACTCTCATATCGATGTTGATACTTCTCTTCACTTGTAA
mRNA sequence
ATGGGTAGGGAAGATATTATTAGAAAGAATGATGATCAAGAGGCATCTCATGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTTGAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGGTTGTGAAATTGCTATCTCTTTCTCAATACCCTAAAACTCATAGCTGCTGCAGCTTCTTCTTCAATAATAATACAAATACTTGTGTCCTTTTTGAGCCTTCTTCAATTTCACATCCTCATCATGATCAGTTAATGATGATGAAGAAGAAGAAGAAGATGATGATCAAGGTACCACCAACAATGTTAACATTGCTGCCTCAAACTTCTTTATCTCTCTCCTTAACTTCTTCTTCTTCAAATCATCAACCCAACAATAATAATATCCCAACTTTGATGGACTTATGGCCACTCCCTACAACTTCTTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATCATCATGATTACTCTGACTCTCATATCGATGTTGATACTTCTCTTCACTTGTAA
Coding sequence (CDS)
ATGGGTAGGGAAGATATTATTAGAAAGAATGATGATCAAGAGGCATCTCATGTTGCTGTTCATTCCTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTTGAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGGTTGTGAAATTGCTATCTCTTTCTCAATACCCTAAAACTCATAGCTGCTGCAGCTTCTTCTTCAATAATAATACAAATACTTGTGTCCTTTTTGAGCCTTCTTCAATTTCACATCCTCATCATGATCAGTTAATGATGATGAAGAAGAAGAAGAAGATGATGATCAAGGTACCACCAACAATGTTAACATTGCTGCCTCAAACTTCTTTATCTCTCTCCTTAACTTCTTCTTCTTCAAATCATCAACCCAACAATAATAATATCCCAACTTTGATGGACTTATGGCCACTCCCTACAACTTCTTGTGATAGTGCCATCTCATTCATTACTAAACTAAATGATCATCATCATGATTACTCTGACTCTCATATCGATGTTGATACTTCTCTTCACTTGTAA
Protein sequence
MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNNIPTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL
Homology
BLAST of Lsi01G004900 vs. ExPASy TrEMBL
Match:
A0A0A0KJS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 2.0e-55
Identity = 138/198 (69.70%), Postives = 157/198 (79.29%), Query Frame = 0
Query: 1 MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTH 60
MG EDI + D+QEA+ V +HSSSIALLQERFRQL+K+KEMREE+EVVKLLSLSQYPKTH
Sbjct: 1 MGWEDI--RKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTH 60
Query: 61 SCCSFFFN----NNTNTCVLFEPS-SISHPHHDQLMMMKKKK-KMMIKVPPTMLTLLPQT 120
+CCSFFFN N+TNTCV+FEPS S ++PHH+ +M MKKKK TMLTLLPQT
Sbjct: 61 TCCSFFFNNTNTNSTNTCVVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQT 120
Query: 121 SLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD 179
SLSLSLTSSSS +HQ +NNIPTLMDLWP+P T+SCDSAISFITKLNDH HHD
Sbjct: 121 SLSLSLTSSSSHDHDHQ-QSNNIPTLMDLWPVPASSTSTTSSCDSAISFITKLNDHDHHD 180
BLAST of Lsi01G004900 vs. ExPASy TrEMBL
Match:
A0A5D3CME5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005880 PE=4 SV=1)
HSP 1 Score: 222.2 bits (565), Expect = 1.7e-54
Identity = 140/197 (71.07%), Postives = 156/197 (79.19%), Query Frame = 0
Query: 1 MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTH 60
MG E+I + D+QEAS V VHSSSIALLQERFRQL+K+KEMREEREVVKLLSLSQYPKTH
Sbjct: 1 MGWEEI--RKDNQEAS-VVVHSSSIALLQERFRQLQKVKEMREEREVVKLLSLSQYPKTH 60
Query: 61 SCCSFFFNN---NTNTCVLFEPS-SISHPHHDQLMMMKKKK-KMMIKVPPTMLTLLPQTS 120
SCCSFFFNN NTNTCV+FEPS S S PHH+ +M MKKKK TMLTLLPQTS
Sbjct: 61 SCCSFFFNNTNTNTNTCVVFEPSISNSSPHHELMMTMKKKKVPSSSSSTTTMLTLLPQTS 120
Query: 121 LSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD- 179
LSLSLT+SSS +HQ +NNIPTLMDLWP+P ++SCDSAISFI+KLNDH HHD
Sbjct: 121 LSLSLTTSSSHDHDHQ-QSNNIPTLMDLWPVPSSTSTTSSSCDSAISFISKLNDHDHHDR 180
BLAST of Lsi01G004900 vs. ExPASy TrEMBL
Match:
A0A6P3ZU56 (uncharacterized protein LOC107415217 OS=Ziziphus jujuba OX=326968 GN=LOC107415217 PE=4 SV=1)
HSP 1 Score: 71.2 bits (173), Expect = 4.8e-09
Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 0
Query: 18 VAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLF 77
+A+H SSIALLQERFRQL++MKEMRE +E++++L + + S + N N + F
Sbjct: 9 IAIH-SSIALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQS------DINLNPTLYF 68
Query: 78 EPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNNI--- 137
EP S P+ D L P + + Q SLSL S+ + + I
Sbjct: 69 EPPK-SFPNPDFL-------------TPQIRPISQQDSLSLWQNLRSNMNIEDFRGIEIS 128
Query: 138 ----PTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL 179
PTLM+LWP+ T S S + N + + SDS DVDTSLHL
Sbjct: 129 CCVPPTLMNLWPVNDTPSSSNASSSSSSNIYKFEDSDSDSDVDTSLHL 155
BLAST of Lsi01G004900 vs. ExPASy TrEMBL
Match:
W9SFE8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000264 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 68/175 (38.86%), Postives = 88/175 (50.29%), Query Frame = 0
Query: 14 EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNT 73
+ +H VH SSIALLQERFRQL+++KE+REERE++++LS ++ NN T
Sbjct: 7 DQTHAVVH-SSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNN----LMNNPTMI 66
Query: 74 CVLFEPS-----SISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQ 133
C EPS S H HH L+ + + P L+L P S S +
Sbjct: 67 C---EPSRLVFHSDHHHHHHHLIFPQIRSSP--SAPQVSLSLWPALQCSSSASEDQYYCS 126
Query: 134 PNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL 179
N+ P L M LWPL T A S + L +D HDYS DVDTSLHL
Sbjct: 127 SINDQTPLLMMKLWPLDTHAPAEFSEASSDKSHLDSDPDHDYS----DVDTSLHL 167
BLAST of Lsi01G004900 vs. ExPASy TrEMBL
Match:
W9QDY3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010582 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.9e-08
Identity = 63/170 (37.06%), Postives = 84/170 (49.41%), Query Frame = 0
Query: 14 EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNT 73
+ +H VH SSIALLQERFRQL+++KE+REERE++++LS ++ NN T
Sbjct: 7 DQTHAVVH-SSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNN----LMNNPTMI 66
Query: 74 CVLFEPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNN 133
C S HH ++ + + P L+L P S S + N+
Sbjct: 67 CEPLRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWPALQCSSSASEDQYYCSSINDQ 126
Query: 134 IPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL 179
P L M LWPL T A S + L +D HDYS DVDTSLHL
Sbjct: 127 TPLLMMKLWPLDTHAPAEFSEASSDKSHLDSDPDHDYS----DVDTSLHL 167
BLAST of Lsi01G004900 vs. NCBI nr
Match:
KGN49044.1 (hypothetical protein Csa_002770 [Cucumis sativus])
HSP 1 Score: 225.3 bits (573), Expect = 4.1e-55
Identity = 138/198 (69.70%), Postives = 157/198 (79.29%), Query Frame = 0
Query: 1 MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTH 60
MG EDI + D+QEA+ V +HSSSIALLQERFRQL+K+KEMREE+EVVKLLSLSQYPKTH
Sbjct: 1 MGWEDI--RKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTH 60
Query: 61 SCCSFFFN----NNTNTCVLFEPS-SISHPHHDQLMMMKKKK-KMMIKVPPTMLTLLPQT 120
+CCSFFFN N+TNTCV+FEPS S ++PHH+ +M MKKKK TMLTLLPQT
Sbjct: 61 TCCSFFFNNTNTNSTNTCVVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQT 120
Query: 121 SLSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD 179
SLSLSLTSSSS +HQ +NNIPTLMDLWP+P T+SCDSAISFITKLNDH HHD
Sbjct: 121 SLSLSLTSSSSHDHDHQ-QSNNIPTLMDLWPVPASSTSTTSSCDSAISFITKLNDHDHHD 180
BLAST of Lsi01G004900 vs. NCBI nr
Match:
TYK12991.1 (hypothetical protein E5676_scaffold255G005880 [Cucumis melo var. makuwa])
HSP 1 Score: 222.2 bits (565), Expect = 3.5e-54
Identity = 140/197 (71.07%), Postives = 156/197 (79.19%), Query Frame = 0
Query: 1 MGREDIIRKNDDQEASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTH 60
MG E+I + D+QEAS V VHSSSIALLQERFRQL+K+KEMREEREVVKLLSLSQYPKTH
Sbjct: 1 MGWEEI--RKDNQEAS-VVVHSSSIALLQERFRQLQKVKEMREEREVVKLLSLSQYPKTH 60
Query: 61 SCCSFFFNN---NTNTCVLFEPS-SISHPHHDQLMMMKKKK-KMMIKVPPTMLTLLPQTS 120
SCCSFFFNN NTNTCV+FEPS S S PHH+ +M MKKKK TMLTLLPQTS
Sbjct: 61 SCCSFFFNNTNTNTNTCVVFEPSISNSSPHHELMMTMKKKKVPSSSSSTTTMLTLLPQTS 120
Query: 121 LSLSLTSSSS---NHQPNNNNIPTLMDLWPLP------TTSCDSAISFITKLNDH-HHD- 179
LSLSLT+SSS +HQ +NNIPTLMDLWP+P ++SCDSAISFI+KLNDH HHD
Sbjct: 121 LSLSLTTSSSHDHDHQ-QSNNIPTLMDLWPVPSSTSTTSSSCDSAISFISKLNDHDHHDR 180
BLAST of Lsi01G004900 vs. NCBI nr
Match:
KAG6594702.1 (hypothetical protein SDJN03_11255, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 110.9 bits (276), Expect = 1.1e-20
Identity = 88/168 (52.38%), Postives = 104/168 (61.90%), Query Frame = 0
Query: 20 VHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLFEP 79
V SSIALLQERFRQL+K+KEMREERE+V+LLSLS PK H NTCVLFEP
Sbjct: 13 VVQSSIALLQERFRQLQKVKEMREERELVRLLSLSN-PKKHGL--------FNTCVLFEP 72
Query: 80 SSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPN---NNNIPT 139
S + MMM MLT LPQTSLSL TS S + + ++P
Sbjct: 73 SVAT-------MMMLPTTTTTTMTATKMLT-LPQTSLSLWPTSPSPGKKLTVGVDVDVPA 132
Query: 140 LMDLWPL------PTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL 179
LM+LWP+ ++SCDSAIS I+KL +H H+ SDS IDVDTSLHL
Sbjct: 133 LMNLWPVDSVTTSTSSSCDSAISLISKL-EHDHE-SDSDIDVDTSLHL 161
BLAST of Lsi01G004900 vs. NCBI nr
Match:
XP_015878993.1 (uncharacterized protein LOC107415217 [Ziziphus jujuba])
HSP 1 Score: 71.2 bits (173), Expect = 9.9e-09
Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 0
Query: 18 VAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNTCVLF 77
+A+H SSIALLQERFRQL++MKEMRE +E++++L + + S + N N + F
Sbjct: 9 IAIH-SSIALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQS------DINLNPTLYF 68
Query: 78 EPSSISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQPNNNNI--- 137
EP S P+ D L P + + Q SLSL S+ + + I
Sbjct: 69 EPPK-SFPNPDFL-------------TPQIRPISQQDSLSLWQNLRSNMNIEDFRGIEIS 128
Query: 138 ----PTLMDLWPLPTTSCDSAISFITKLNDHHHDYSDSHIDVDTSLHL 179
PTLM+LWP+ T S S + N + + SDS DVDTSLHL
Sbjct: 129 CCVPPTLMNLWPVNDTPSSSNASSSSSSNIYKFEDSDSDSDVDTSLHL 155
BLAST of Lsi01G004900 vs. NCBI nr
Match:
EXC73609.1 (hypothetical protein L484_000264 [Morus notabilis])
HSP 1 Score: 69.7 bits (169), Expect = 2.9e-08
Identity = 68/175 (38.86%), Postives = 88/175 (50.29%), Query Frame = 0
Query: 14 EASHVAVHSSSIALLQERFRQLEKMKEMREEREVVKLLSLSQYPKTHSCCSFFFNNNTNT 73
+ +H VH SSIALLQERFRQL+++KE+REERE++++LS ++ NN T
Sbjct: 7 DQTHAVVH-SSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNN----LMNNPTMI 66
Query: 74 CVLFEPS-----SISHPHHDQLMMMKKKKKMMIKVPPTMLTLLPQTSLSLSLTSSSSNHQ 133
C EPS S H HH L+ + + P L+L P S S +
Sbjct: 67 C---EPSRLVFHSDHHHHHHHLIFPQIRSSP--SAPQVSLSLWPALQCSSSASEDQYYCS 126
Query: 134 PNNNNIPTL-MDLWPLPT---TSCDSAISFITKL-NDHHHDYSDSHIDVDTSLHL 179
N+ P L M LWPL T A S + L +D HDYS DVDTSLHL
Sbjct: 127 SINDQTPLLMMKLWPLDTHAPAEFSEASSDKSHLDSDPDHDYS----DVDTSLHL 167
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KJS5 | 2.0e-55 | 69.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1 | [more] |
A0A5D3CME5 | 1.7e-54 | 71.07 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6P3ZU56 | 4.8e-09 | 37.50 | uncharacterized protein LOC107415217 OS=Ziziphus jujuba OX=326968 GN=LOC10741521... | [more] |
W9SFE8 | 1.4e-08 | 38.86 | Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000264 PE=4 SV=1 | [more] |
W9QDY3 | 6.9e-08 | 37.06 | Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010582 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN49044.1 | 4.1e-55 | 69.70 | hypothetical protein Csa_002770 [Cucumis sativus] | [more] |
TYK12991.1 | 3.5e-54 | 71.07 | hypothetical protein E5676_scaffold255G005880 [Cucumis melo var. makuwa] | [more] |
KAG6594702.1 | 1.1e-20 | 52.38 | hypothetical protein SDJN03_11255, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_015878993.1 | 9.9e-09 | 37.50 | uncharacterized protein LOC107415217 [Ziziphus jujuba] | [more] |
EXC73609.1 | 2.9e-08 | 38.86 | hypothetical protein L484_000264 [Morus notabilis] | [more] |
Match Name | E-value | Identity | Description | |