Lsi01G004600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G004600
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSerine/arginine repetitive matrix-like protein
Locationchr01: 3824669 .. 3825697 (-)
RNA-Seq ExpressionLsi01G004600
SyntenyLsi01G004600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTCCCTTCGAAAATCCCCAATCTCAGCCTCTCTCCCGGCCCACCGGCGCCAGAAGAAGCGGCAGCTTCCCCACCTCCCCTGAGTTCGAGTTCTGGATGGTTCGAAACCCCTCTTTCCCTCAGCCCAATCTTCTTTCTGCCGACGAGCTCTTCGTTGATGGCGTTCTTCTTCCCCTTCACCTTGTATCCAACCACTCCCCATCTCAGTCCACTGACCCTAACCAGAAATCTGACCTGGAACCTCCTCCCTCCGAACCCGATCCCAGCGACGGCCCCAAATTGACGCCCAATTCGGCGGATTCGGGTTCTTCGTTAACCTCGTCGAAGCGGTGGAGCATTTTCAAGAAGAGCGAGAAGAAGAACGTCACGGGTAATCAGGAGGATCGAGACAAGGAGAAGAAGAAAGAGAAGAAGACTGGGAATGGGTCTACATCGGCCGAGTTGAATATCAATATTTGGCCCTTTTCGCGTAGTAGATCCGCTGGGAATGCTTTCACTAGGCCTAAAATGTTCCCTGGCGGCCAACCCGGATCCCGGAAGGTCAACAGTGCGCCGTGTTCTCGCAGCAACTCCGCCGGCGAATCCAAGTCCAGGAAGTGGCCGAGCAGCCCGAGCCGCGCTGGCGTCCATCTCGGCCGGAGTAGCCCAGTTTGGCAGGTCCGCCGCGGCGGATCCGCTCCCAAAACCTCCGAAAACCTCTCTCGCAATGCCGAAAAACCCGCCCGGAAAGAACCCACGGACGCGCACCGGAGCAAGGCTGTAGCCGCCTCCTCCTCCGCCTCCAGAGTTAGAGTTTTGAATTTGAATGTCCCCATGTGTATTGGGTACAGGAACCATTTGAGCTGTAGAAGCGATGAGACCAGTGCACTTGGGGTTATTGGCAGCGGCGGCGGTGGAAGCAGCGGCGGCAGCCATGGTTACGACAACAATGGAGACGGCGGCAATATCAGTAATCCTGGAAACTCAAGTAGTACTGCCAATCTCTTTAGCATAAGAAGCCTTTTTACTAAGAAAGTGCATTAA

mRNA sequence

ATGGAGATTCCCTTCGAAAATCCCCAATCTCAGCCTCTCTCCCGGCCCACCGGCGCCAGAAGAAGCGGCAGCTTCCCCACCTCCCCTGAGTTCGAGTTCTGGATGGTTCGAAACCCCTCTTTCCCTCAGCCCAATCTTCTTTCTGCCGACGAGCTCTTCGTTGATGGCGTTCTTCTTCCCCTTCACCTTGTATCCAACCACTCCCCATCTCAGTCCACTGACCCTAACCAGAAATCTGACCTGGAACCTCCTCCCTCCGAACCCGATCCCAGCGACGGCCCCAAATTGACGCCCAATTCGGCGGATTCGGGTTCTTCGTTAACCTCGTCGAAGCGGTGGAGCATTTTCAAGAAGAGCGAGAAGAAGAACGTCACGGGTAATCAGGAGGATCGAGACAAGGAGAAGAAGAAAGAGAAGAAGACTGGGAATGGGTCTACATCGGCCGAGTTGAATATCAATATTTGGCCCTTTTCGCGTAGTAGATCCGCTGGGAATGCTTTCACTAGGCCTAAAATGTTCCCTGGCGGCCAACCCGGATCCCGGAAGGTCAACAGTGCGCCGTGTTCTCGCAGCAACTCCGCCGGCGAATCCAAGTCCAGGAAGTGGCCGAGCAGCCCGAGCCGCGCTGGCGTCCATCTCGGCCGGAGTAGCCCAGTTTGGCAGGTCCGCCGCGGCGGATCCGCTCCCAAAACCTCCGAAAACCTCTCTCGCAATGCCGAAAAACCCGCCCGGAAAGAACCCACGGACGCGCACCGGAGCAAGGCTGTAGCCGCCTCCTCCTCCGCCTCCAGAGTTAGAGTTTTGAATTTGAATGTCCCCATGTGTATTGGGTACAGGAACCATTTGAGCTGTAGAAGCGATGAGACCAGTGCACTTGGGGTTATTGGCAGCGGCGGCGGTGGAAGCAGCGGCGGCAGCCATGGTTACGACAACAATGGAGACGGCGGCAATATCAGTAATCCTGGAAACTCAAGTAGTACTGCCAATCTCTTTAGCATAAGAAGCCTTTTTACTAAGAAAGTGCATTAA

Coding sequence (CDS)

ATGGAGATTCCCTTCGAAAATCCCCAATCTCAGCCTCTCTCCCGGCCCACCGGCGCCAGAAGAAGCGGCAGCTTCCCCACCTCCCCTGAGTTCGAGTTCTGGATGGTTCGAAACCCCTCTTTCCCTCAGCCCAATCTTCTTTCTGCCGACGAGCTCTTCGTTGATGGCGTTCTTCTTCCCCTTCACCTTGTATCCAACCACTCCCCATCTCAGTCCACTGACCCTAACCAGAAATCTGACCTGGAACCTCCTCCCTCCGAACCCGATCCCAGCGACGGCCCCAAATTGACGCCCAATTCGGCGGATTCGGGTTCTTCGTTAACCTCGTCGAAGCGGTGGAGCATTTTCAAGAAGAGCGAGAAGAAGAACGTCACGGGTAATCAGGAGGATCGAGACAAGGAGAAGAAGAAAGAGAAGAAGACTGGGAATGGGTCTACATCGGCCGAGTTGAATATCAATATTTGGCCCTTTTCGCGTAGTAGATCCGCTGGGAATGCTTTCACTAGGCCTAAAATGTTCCCTGGCGGCCAACCCGGATCCCGGAAGGTCAACAGTGCGCCGTGTTCTCGCAGCAACTCCGCCGGCGAATCCAAGTCCAGGAAGTGGCCGAGCAGCCCGAGCCGCGCTGGCGTCCATCTCGGCCGGAGTAGCCCAGTTTGGCAGGTCCGCCGCGGCGGATCCGCTCCCAAAACCTCCGAAAACCTCTCTCGCAATGCCGAAAAACCCGCCCGGAAAGAACCCACGGACGCGCACCGGAGCAAGGCTGTAGCCGCCTCCTCCTCCGCCTCCAGAGTTAGAGTTTTGAATTTGAATGTCCCCATGTGTATTGGGTACAGGAACCATTTGAGCTGTAGAAGCGATGAGACCAGTGCACTTGGGGTTATTGGCAGCGGCGGCGGTGGAAGCAGCGGCGGCAGCCATGGTTACGACAACAATGGAGACGGCGGCAATATCAGTAATCCTGGAAACTCAAGTAGTACTGCCAATCTCTTTAGCATAAGAAGCCTTTTTACTAAGAAAGTGCATTAA

Protein sequence

MEIPFENPQSQPLSRPTGARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLPLHLVSNHSPSQSTDPNQKSDLEPPPSEPDPSDGPKLTPNSADSGSSLTSSKRWSIFKKSEKKNVTGNQEDRDKEKKKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGGQPGSRKVNSAPCSRSNSAGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAPKTSENLSRNAEKPARKEPTDAHRSKAVAASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGGGSSGGSHGYDNNGDGGNISNPGNSSSTANLFSIRSLFTKKVH
Homology
BLAST of Lsi01G004600 vs. ExPASy TrEMBL
Match: A0A6J1IMB6 (uncharacterized protein LOC111478712 OS=Cucurbita maxima OX=3661 GN=LOC111478712 PE=4 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 1.3e-148
Identity = 292/342 (85.38%), Postives = 307/342 (89.77%), Query Frame = 0

Query: 1   MEIPFENPQSQPLSRPTGARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLP 60
           MEIPF N Q+QPLS  TG RRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELF DGVLLP
Sbjct: 1   MEIPFLNSQTQPLSPITGGRRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFEDGVLLP 60

Query: 61  LHLVSNHSPSQSTDPNQKSDLEPPPSEPDPSDGPKLTPNSADSGSSLTSSKRWSIFKKSE 120
           LHLVSNHSPS S+DPN+KSD EPPP E DP DGPKLTPNS +SGSSLTSSKRWSIFKK E
Sbjct: 61  LHLVSNHSPSLSSDPNKKSDPEPPPPELDPCDGPKLTPNSVESGSSLTSSKRWSIFKKCE 120

Query: 121 KKNVTGNQEDRDKEKKKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGGQPGS 180
           KKN   NQEDR KEKKKEKK+GNGSTSAELNINIWPFSRSRSAGNA+TRPKMFPG QPGS
Sbjct: 121 KKNAAANQEDRVKEKKKEKKSGNGSTSAELNINIWPFSRSRSAGNAYTRPKMFPGTQPGS 180

Query: 181 RKVNSAPCSRSNSAGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAPKTSENLSRNAE 240
           RKVNSAPCSRSNS GESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSA KTSE  SRNAE
Sbjct: 181 RKVNSAPCSRSNSTGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAAKTSETFSRNAE 240

Query: 241 KPARKEPTDAHRSKAVAASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGG 300
           K ARKEPTD +RSKA AA +SASRVRVLNLNVPMCIGYRNHLSCRSDE SA+GV G+ GG
Sbjct: 241 KTARKEPTDNNRSKATAA-ASASRVRVLNLNVPMCIGYRNHLSCRSDEASAVGVGGNEGG 300

Query: 301 GSSGGSHGYDNNGDGGNISNPGNSSSTANLFSIRSLFTKKVH 343
           G SG  H Y+NNGDGG++SNPGNS++  NLFSIRSLFTKKVH
Sbjct: 301 G-SGSGHVYNNNGDGGSVSNPGNSNT--NLFSIRSLFTKKVH 338

BLAST of Lsi01G004600 vs. ExPASy TrEMBL
Match: A0A6J1GDJ4 (uncharacterized protein LOC111453190 OS=Cucurbita moschata OX=3662 GN=LOC111453190 PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 7.2e-147
Identity = 292/345 (84.64%), Postives = 305/345 (88.41%), Query Frame = 0

Query: 1   MEIPFENPQSQPLSRPTGARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLP 60
           MEIPF N QSQPLS   G RRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELF DGVLLP
Sbjct: 1   MEIPFLNSQSQPLSPIAGGRRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFEDGVLLP 60

Query: 61  LHLVSNHSPSQSTDPNQKSDLEPPPSEPDPSDGPKLTPNSADSGSSLTSSKRWSIFKKSE 120
           LHLVSNHS S S+DPN+KSD EP PSEPDP DGPKLTPNS +SGSSLTSSKRWSIFKKSE
Sbjct: 61  LHLVSNHSLSLSSDPNKKSDPEPSPSEPDPCDGPKLTPNSVESGSSLTSSKRWSIFKKSE 120

Query: 121 KKNVTGNQEDRDKEKKKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGGQPGS 180
           KKNV  NQEDR KEKKKEKK+GNGSTSAELNINIWPFSRSRSAGNA+TRPKMF G QPGS
Sbjct: 121 KKNVAANQEDRVKEKKKEKKSGNGSTSAELNINIWPFSRSRSAGNAYTRPKMFSGTQPGS 180

Query: 181 RKVNSAPCSRSNSAGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAPKTSENLSRNAE 240
           RKVNSAPCSRSNS GESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSA KTSE  SRNAE
Sbjct: 181 RKVNSAPCSRSNSTGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAAKTSETFSRNAE 240

Query: 241 KPARKEPTDAHRSKAVAASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGG 300
           K ARKEPTD +RSKA AA   ASRVRVLNLNVPMCIGYRNHLSCRSDE SA+GV+G+ GG
Sbjct: 241 KAARKEPTDNNRSKATAA---ASRVRVLNLNVPMCIGYRNHLSCRSDEASAVGVVGNDGG 300

Query: 301 GS---SGGSHGYDNNGDGGNISNPGNSSSTANLFSIRSLFTKKVH 343
           GS   S GSH Y NNGD  ++SNPGNS++  NLFSIRSLFTKKVH
Sbjct: 301 GSSSCSSGSHVYGNNGDLSSVSNPGNSNT--NLFSIRSLFTKKVH 340

BLAST of Lsi01G004600 vs. ExPASy TrEMBL
Match: A0A1S3B081 (dermokine OS=Cucumis melo OX=3656 GN=LOC103484641 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.8e-143
Identity = 282/313 (90.10%), Postives = 289/313 (92.33%), Query Frame = 0

Query: 35  MVRNPSFPQPNLLSADELFVDGVLLPLHLVSNHSPSQSTDPNQKSDLEPPPSEPDPSDGP 94
           MVRNPSFPQ NLLSADELFVDGVLLPLHL+ NHS S ST+PNQK  LEPPPSEPDPSDGP
Sbjct: 1   MVRNPSFPQTNLLSADELFVDGVLLPLHLLPNHSSSSSTEPNQKPHLEPPPSEPDPSDGP 60

Query: 95  KLTPNSADSGSSLTSSKRWSIFKKSEKKNVTGNQEDRDKEKKKEKKTGNGSTSAELNINI 154
           KLTPNSADSGS   SSKRWSIFKKSEKKN +GNQEDRDKEKKKEKKT NGSTSAELNINI
Sbjct: 61  KLTPNSADSGS---SSKRWSIFKKSEKKNSSGNQEDRDKEKKKEKKTTNGSTSAELNINI 120

Query: 155 WPFSRSRSAGNAFTRPKMFPGGQPGSRKVNSAPCSRSNSAGESKSRKWPSSPSRAGVHLG 214
           WPFSRSRSAGNAFTRPK+FPG QPGSRKVNSAPCSRSNSAGESKSRKWPSSPSR GVHLG
Sbjct: 121 WPFSRSRSAGNAFTRPKLFPGAQPGSRKVNSAPCSRSNSAGESKSRKWPSSPSRGGVHLG 180

Query: 215 RSSPVWQVRRGGSAPKTSENLSRNAEKPARKEPTDAHRSK--AVAASSSASRVRVLNLNV 274
           RSSPVWQVRRGGSAPKTSE  SRNA+KPARKEPT+ HRSK  A AASSSASRVRVLNLNV
Sbjct: 181 RSSPVWQVRRGGSAPKTSETFSRNADKPARKEPTEVHRSKAAAAAASSSASRVRVLNLNV 240

Query: 275 PMCIGYRNHLSCRSDETSALGVIGSGGGGSS---GGSHGYDNNGDGGNISNPGNSSSTAN 334
           PMCIGYRNHLSCRSDETSALGVIGSGGGGSS   GGSHGYDNNGDG  +SNPGNSSSTAN
Sbjct: 241 PMCIGYRNHLSCRSDETSALGVIGSGGGGSSSNNGGSHGYDNNGDGSTVSNPGNSSSTAN 300

Query: 335 LFSIRSLFTKKVH 343
           LFSIRSLFTKKVH
Sbjct: 301 LFSIRSLFTKKVH 310

BLAST of Lsi01G004600 vs. ExPASy TrEMBL
Match: A0A5D3CM45 (Dermokine OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006170 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 1.1e-142
Identity = 281/313 (89.78%), Postives = 289/313 (92.33%), Query Frame = 0

Query: 35  MVRNPSFPQPNLLSADELFVDGVLLPLHLVSNHSPSQSTDPNQKSDLEPPPSEPDPSDGP 94
           MVRNPSFPQ NLLSADELFVDGVLLPLHL+ NHS S ST+PNQK  LEPPPSEPDPSDGP
Sbjct: 1   MVRNPSFPQTNLLSADELFVDGVLLPLHLLPNHSSSPSTEPNQKPHLEPPPSEPDPSDGP 60

Query: 95  KLTPNSADSGSSLTSSKRWSIFKKSEKKNVTGNQEDRDKEKKKEKKTGNGSTSAELNINI 154
           KLTPNSADSGS   SSKRWSIFKKSEKKN +GNQEDRDKEKKKEKKT NGSTSAELNINI
Sbjct: 61  KLTPNSADSGS---SSKRWSIFKKSEKKNSSGNQEDRDKEKKKEKKTTNGSTSAELNINI 120

Query: 155 WPFSRSRSAGNAFTRPKMFPGGQPGSRKVNSAPCSRSNSAGESKSRKWPSSPSRAGVHLG 214
           WPFSRSRSAGNAFTRPK+FPG QPGSRKVNSAPCSRSNSAGESKSRKWPSSPSR GVHLG
Sbjct: 121 WPFSRSRSAGNAFTRPKLFPGAQPGSRKVNSAPCSRSNSAGESKSRKWPSSPSRGGVHLG 180

Query: 215 RSSPVWQVRRGGSAPKTSENLSRNAEKPARKEPTDAHRSK--AVAASSSASRVRVLNLNV 274
           RSSPVWQVRRGGSAPK+SE  SRNA+KPARKEPT+ HRSK  A AASSSASRVRVLNLNV
Sbjct: 181 RSSPVWQVRRGGSAPKSSETFSRNADKPARKEPTEVHRSKAAAAAASSSASRVRVLNLNV 240

Query: 275 PMCIGYRNHLSCRSDETSALGVIGSGGGGSS---GGSHGYDNNGDGGNISNPGNSSSTAN 334
           PMCIGYRNHLSCRSDETSALGVIGSGGGGSS   GGSHGYDNNGDG  +SNPGNSSSTAN
Sbjct: 241 PMCIGYRNHLSCRSDETSALGVIGSGGGGSSSNNGGSHGYDNNGDGSTVSNPGNSSSTAN 300

Query: 335 LFSIRSLFTKKVH 343
           LFSIRSLFTKKVH
Sbjct: 301 LFSIRSLFTKKVH 310

BLAST of Lsi01G004600 vs. ExPASy TrEMBL
Match: A0A6J1EE91 (uncharacterized protein LOC111433517 OS=Cucurbita moschata OX=3662 GN=LOC111433517 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.5e-139
Identity = 273/327 (83.49%), Postives = 289/327 (88.38%), Query Frame = 0

Query: 22  SGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLPLHLVSNHSPSQSTDPNQKSDL 81
           +GSFPTSPEFEFWMVRNPS PQPNLLSADELFVDGVLLPLHLVSNH  SQS +PN K+D 
Sbjct: 7   TGSFPTSPEFEFWMVRNPSCPQPNLLSADELFVDGVLLPLHLVSNHCTSQSNEPNPKTDP 66

Query: 82  EPPPSEPDPSDGPKLTPNSADSGSSLTSSKRWSIFKKSEKKNVTGNQEDRDKEKKKEKKT 141
           EPPPSEPDP DGPKL   SA++GSSLTSS+RW+IFKKSEKKN +G QEDR+KEKKKEKKT
Sbjct: 67  EPPPSEPDPCDGPKLMRVSAETGSSLTSSQRWNIFKKSEKKNASGCQEDREKEKKKEKKT 126

Query: 142 GNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGGQPGSRKVNSAPCSRSNSAGESKSRK 201
           GNGS+SAELNINIWPFSRSRSAGN FTRPK+F GGQPGSRK NSAPCSRSNSAGESKSRK
Sbjct: 127 GNGSSSAELNINIWPFSRSRSAGNTFTRPKIFTGGQPGSRKFNSAPCSRSNSAGESKSRK 186

Query: 202 WPSSPSRAGVHLGRSSPVWQVRRGGSAPKTSENLSRNAEKPARKEPTDAHRSKAVAASSS 261
           WPSSPS  GVHLGRSSPVWQVRRGGS  KTSE LSRNAEK ARKEPTDAHRSKA AAS  
Sbjct: 187 WPSSPSHTGVHLGRSSPVWQVRRGGSTVKTSETLSRNAEKTARKEPTDAHRSKAAAASG- 246

Query: 262 ASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGGGSS------GGSHGYDNNGDG 321
              VRVLNLNVPMCIGYRNHLSCRSDETS LG +GSGGG SS      GGSHG DNNG+G
Sbjct: 247 ---VRVLNLNVPMCIGYRNHLSCRSDETSGLGAVGSGGGRSSSSSGVDGGSHGSDNNGNG 306

Query: 322 GNISNPGNSSSTANLFSIRSLFTKKVH 343
           G++SNPGNSSS+ NLFSIRSLFTKKVH
Sbjct: 307 GSVSNPGNSSSSTNLFSIRSLFTKKVH 329

BLAST of Lsi01G004600 vs. NCBI nr
Match: XP_038883611.1 (uncharacterized protein LOC120074528 [Benincasa hispida])

HSP 1 Score: 589.7 bits (1519), Expect = 1.6e-164
Identity = 315/340 (92.65%), Postives = 319/340 (93.82%), Query Frame = 0

Query: 6   ENPQSQPLSRPTGARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLPLHLVS 65
           E PQSQPLS PT ARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLPLHL+S
Sbjct: 2   EIPQSQPLSPPTAARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLPLHLLS 61

Query: 66  NHSPSQSTDPNQKSDLEPPPSEPDPSDGPKLTPNSADSGSSLTSSKRWSIFKKSEKKNVT 125
           NHS S STDPNQK D E PPSEPDPSDGPKLTPNSADSGSSL+SSKRWSIFKKSEKKN T
Sbjct: 62  NHSSSPSTDPNQKPDTELPPSEPDPSDGPKLTPNSADSGSSLSSSKRWSIFKKSEKKNAT 121

Query: 126 GNQEDRDKEKKKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGGQPGSRKVNS 185
            NQEDRDKEKKKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPG QPGSRKVNS
Sbjct: 122 ANQEDRDKEKKKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGAQPGSRKVNS 181

Query: 186 APCSRSNSAGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAPKTSENLSRNAEKPARK 245
           APCSRSNSAGESKSRKWPSSPSR GVHLGRSSPVWQVRRGGS  K+SE LSRNAEK  RK
Sbjct: 182 APCSRSNSAGESKSRKWPSSPSRPGVHLGRSSPVWQVRRGGSTAKSSETLSRNAEKTTRK 241

Query: 246 EPTDAHRSKAVAASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGGG---S 305
           EPTDAHRSKA AASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGGG   S
Sbjct: 242 EPTDAHRSKAAAASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGGGNSSS 301

Query: 306 SGGSHGYDNNGDGGNISNPGNSSSTANLFSIRSLFTKKVH 343
           SGGSHGYDNNGDGGNI+NPGNSSSTANLFSIRSLFTKKVH
Sbjct: 302 SGGSHGYDNNGDGGNINNPGNSSSTANLFSIRSLFTKKVH 341

BLAST of Lsi01G004600 vs. NCBI nr
Match: XP_004134782.1 (uncharacterized protein LOC101203369 [Cucumis sativus] >KAE8647653.1 hypothetical protein Csa_003038 [Cucumis sativus])

HSP 1 Score: 541.6 bits (1394), Expect = 5.0e-150
Identity = 291/332 (87.65%), Postives = 302/332 (90.96%), Query Frame = 0

Query: 16  PTGARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLPLHLVSNHSPSQSTDP 75
           P+ +  + +FPTSPEFEFWMVRNPSFPQ NLLSADELFVDGVLLPLHL+ NHSPS STDP
Sbjct: 4   PSPSPSTATFPTSPEFEFWMVRNPSFPQTNLLSADELFVDGVLLPLHLLPNHSPSPSTDP 63

Query: 76  NQKSDLEPPPSEPDPSDGPKLTPNSADSGSSLTSSKRWSIFKKSEKKNVTGNQEDRDKEK 135
           NQK  LEPPPSEPDPSDGPKLTPNS DSGS   SSKRWSIFKKSEKKN +GNQEDRDKEK
Sbjct: 64  NQKPHLEPPPSEPDPSDGPKLTPNSTDSGS---SSKRWSIFKKSEKKNTSGNQEDRDKEK 123

Query: 136 KKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGGQPGSRKVNSAPCSRSNSAG 195
           KKEKKT NGSTSAELNINIWPFSRSRSAGNAFTRPK+FPG QPGSRKVNSAPCSRSNSAG
Sbjct: 124 KKEKKTTNGSTSAELNINIWPFSRSRSAGNAFTRPKLFPGAQPGSRKVNSAPCSRSNSAG 183

Query: 196 ESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAPKTSENLSRNAEKPARKEPTDAHRSKA 255
           ESKSRKWPSSPSR GVHLGRSSPVWQVRRGGS PKT E  SRNA+KPARKEP++ HRSKA
Sbjct: 184 ESKSRKWPSSPSRGGVHLGRSSPVWQVRRGGSVPKTPETFSRNADKPARKEPSEVHRSKA 243

Query: 256 --VAASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGGGS---SGGSHGYD 315
              AASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGGGS   SGGSHGYD
Sbjct: 244 ATAAASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGGGSSSNSGGSHGYD 303

Query: 316 NNGDGGNISNPGNSSSTANLFSIRSLFTKKVH 343
           NNGDG  +SNPGNSSSTANLFSIRSLFTKKVH
Sbjct: 304 NNGDGSAVSNPGNSSSTANLFSIRSLFTKKVH 332

BLAST of Lsi01G004600 vs. NCBI nr
Match: XP_022978897.1 (uncharacterized protein LOC111478712 [Cucurbita maxima])

HSP 1 Score: 535.8 bits (1379), Expect = 2.7e-148
Identity = 292/342 (85.38%), Postives = 307/342 (89.77%), Query Frame = 0

Query: 1   MEIPFENPQSQPLSRPTGARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLP 60
           MEIPF N Q+QPLS  TG RRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELF DGVLLP
Sbjct: 1   MEIPFLNSQTQPLSPITGGRRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFEDGVLLP 60

Query: 61  LHLVSNHSPSQSTDPNQKSDLEPPPSEPDPSDGPKLTPNSADSGSSLTSSKRWSIFKKSE 120
           LHLVSNHSPS S+DPN+KSD EPPP E DP DGPKLTPNS +SGSSLTSSKRWSIFKK E
Sbjct: 61  LHLVSNHSPSLSSDPNKKSDPEPPPPELDPCDGPKLTPNSVESGSSLTSSKRWSIFKKCE 120

Query: 121 KKNVTGNQEDRDKEKKKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGGQPGS 180
           KKN   NQEDR KEKKKEKK+GNGSTSAELNINIWPFSRSRSAGNA+TRPKMFPG QPGS
Sbjct: 121 KKNAAANQEDRVKEKKKEKKSGNGSTSAELNINIWPFSRSRSAGNAYTRPKMFPGTQPGS 180

Query: 181 RKVNSAPCSRSNSAGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAPKTSENLSRNAE 240
           RKVNSAPCSRSNS GESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSA KTSE  SRNAE
Sbjct: 181 RKVNSAPCSRSNSTGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAAKTSETFSRNAE 240

Query: 241 KPARKEPTDAHRSKAVAASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGG 300
           K ARKEPTD +RSKA AA +SASRVRVLNLNVPMCIGYRNHLSCRSDE SA+GV G+ GG
Sbjct: 241 KTARKEPTDNNRSKATAA-ASASRVRVLNLNVPMCIGYRNHLSCRSDEASAVGVGGNEGG 300

Query: 301 GSSGGSHGYDNNGDGGNISNPGNSSSTANLFSIRSLFTKKVH 343
           G SG  H Y+NNGDGG++SNPGNS++  NLFSIRSLFTKKVH
Sbjct: 301 G-SGSGHVYNNNGDGGSVSNPGNSNT--NLFSIRSLFTKKVH 338

BLAST of Lsi01G004600 vs. NCBI nr
Match: XP_022949953.1 (uncharacterized protein LOC111453190 [Cucurbita moschata])

HSP 1 Score: 530.0 bits (1364), Expect = 1.5e-146
Identity = 292/345 (84.64%), Postives = 305/345 (88.41%), Query Frame = 0

Query: 1   MEIPFENPQSQPLSRPTGARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLP 60
           MEIPF N QSQPLS   G RRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELF DGVLLP
Sbjct: 1   MEIPFLNSQSQPLSPIAGGRRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFEDGVLLP 60

Query: 61  LHLVSNHSPSQSTDPNQKSDLEPPPSEPDPSDGPKLTPNSADSGSSLTSSKRWSIFKKSE 120
           LHLVSNHS S S+DPN+KSD EP PSEPDP DGPKLTPNS +SGSSLTSSKRWSIFKKSE
Sbjct: 61  LHLVSNHSLSLSSDPNKKSDPEPSPSEPDPCDGPKLTPNSVESGSSLTSSKRWSIFKKSE 120

Query: 121 KKNVTGNQEDRDKEKKKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGGQPGS 180
           KKNV  NQEDR KEKKKEKK+GNGSTSAELNINIWPFSRSRSAGNA+TRPKMF G QPGS
Sbjct: 121 KKNVAANQEDRVKEKKKEKKSGNGSTSAELNINIWPFSRSRSAGNAYTRPKMFSGTQPGS 180

Query: 181 RKVNSAPCSRSNSAGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAPKTSENLSRNAE 240
           RKVNSAPCSRSNS GESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSA KTSE  SRNAE
Sbjct: 181 RKVNSAPCSRSNSTGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAAKTSETFSRNAE 240

Query: 241 KPARKEPTDAHRSKAVAASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVIGSGGG 300
           K ARKEPTD +RSKA AA   ASRVRVLNLNVPMCIGYRNHLSCRSDE SA+GV+G+ GG
Sbjct: 241 KAARKEPTDNNRSKATAA---ASRVRVLNLNVPMCIGYRNHLSCRSDEASAVGVVGNDGG 300

Query: 301 GS---SGGSHGYDNNGDGGNISNPGNSSSTANLFSIRSLFTKKVH 343
           GS   S GSH Y NNGD  ++SNPGNS++  NLFSIRSLFTKKVH
Sbjct: 301 GSSSCSSGSHVYGNNGDLSSVSNPGNSNT--NLFSIRSLFTKKVH 340

BLAST of Lsi01G004600 vs. NCBI nr
Match: KAG7033972.1 (hypothetical protein SDJN02_03698, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 529.3 bits (1362), Expect = 2.5e-146
Identity = 292/350 (83.43%), Postives = 308/350 (88.00%), Query Frame = 0

Query: 1   MEIPFENPQSQPLSRPTGARRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFVDGVLLP 60
           MEIPF N QSQ LS   G RRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELF DGVLLP
Sbjct: 1   MEIPFLNSQSQTLSPIAGGRRSGSFPTSPEFEFWMVRNPSFPQPNLLSADELFEDGVLLP 60

Query: 61  LHLVSNHSPSQSTDPNQKSDLEPPPSEPDPSDGPKLTPNSADSGSSLTSSKRWSIFKKSE 120
           LHLVSNHS S S+DPN+KSD EP PSEPDP DGPKLTPNS +SGSSLTSSKRWSIFKKSE
Sbjct: 61  LHLVSNHSLSLSSDPNKKSDPEPSPSEPDPCDGPKLTPNSVESGSSLTSSKRWSIFKKSE 120

Query: 121 KKNVTGNQEDRDKEKKKEKKTGNGSTSAELNINIWPFSRSRSAGNAFTRPKMFPGGQPGS 180
           KKNV  NQEDR KEKKKEKK+GNGSTSAELNINIWPFSRSRSAGNA+TRPKMF G QPGS
Sbjct: 121 KKNVAANQEDRVKEKKKEKKSGNGSTSAELNINIWPFSRSRSAGNAYTRPKMFAGTQPGS 180

Query: 181 RKVNSAPCSRSNSAGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAPKTSENLSRNAE 240
           RKVNSAPCSRSNS GESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSA KTSEN SRNAE
Sbjct: 181 RKVNSAPCSRSNSTGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGSAAKTSENFSRNAE 240

Query: 241 KPARKEPTDAHRSKAVA-----ASSSASRVRVLNLNVPMCIGYRNHLSCRSDETSALGVI 300
           K ARKEPTD +RSKA A     A+++ASRVRVLNLNVPMCIGYRNHLSCRSDE SA+GV+
Sbjct: 241 KAARKEPTDNNRSKATATATATATAAASRVRVLNLNVPMCIGYRNHLSCRSDEASAVGVV 300

Query: 301 GSGGGGS---SGGSHGYDNNGDGGNISNPGNSSSTANLFSIRSLFTKKVH 343
           G+ GGGS   S GSH Y NNGD  ++SNPGNS++  NLFSIRSLFTKKVH
Sbjct: 301 GNDGGGSSSCSSGSHVYGNNGDLSSVSNPGNSNT--NLFSIRSLFTKKVH 348

BLAST of Lsi01G004600 vs. TAIR 10
Match: AT4G22190.1 (unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). )

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-64
Identity = 185/355 (52.11%), Postives = 221/355 (62.25%), Query Frame = 0

Query: 9   QSQPLSR---PTGA--RRSGSFPTSPEFEFWMVRNPSFPQ--PNLLSADELFVDGVLLPL 68
           +S+PL     P G+  RRS      PEFEFW + N SFPQ   +LLSADELF DGVLLPL
Sbjct: 56  RSKPLPETLSPCGSQRRRSSCDSNPPEFEFWRLTNSSFPQADSDLLSADELFHDGVLLPL 115

Query: 69  HLVSNHSPSQSTDPNQKSDLEPPPSEPDPSDGPKLTPNSAD----SGSSLTS----SKRW 128
            L+S  S  QS DPN  ++ +P PS   PS G  +T   +D     GS LT     SKRW
Sbjct: 116 DLLSVKSELQS-DPN-IAECDPDPS---PSTGSLITEQKSDLEPGLGSELTRETTVSKRW 175

Query: 129 -SIFKKSEKKNVTGNQEDRDKEKKKEKKTGNGSTS-----AELNINIWPFSRSRSAGNAF 188
             IF+KSE K   G +E   + KK++KKTG+G +S     AELNINIWPFSRSRSAGN  
Sbjct: 176 RDIFRKSETK-PPGKKEKVKENKKEKKKTGSGPSSGSGSGAELNINIWPFSRSRSAGNNV 235

Query: 189 TRPKMFPGGQPGSRKVNSAPCSRSNSAGESKSRKWPSSPSRAGVHLGRSSPVWQVRRGGS 248
           TRP+M   G P +RKV+SAPCSRSNS GESKSRKWPSSPSR GVHLGR+SPVWQVRRGG 
Sbjct: 236 TRPRM-SFGAPTTRKVSSAPCSRSNSTGESKSRKWPSSPSRNGVHLGRNSPVWQVRRGGG 295

Query: 249 APKTSENLSRNAEKPARKEPTDAHRSKAVAASSSASRVRVLNLNVPMCIGYRNHLSCRSD 308
           AP              ++E  +  + K V  S+ A   +VLNLNVPMCIGYR+ LSCR++
Sbjct: 296 APVGKTIPEPMGRVVGKREIPETRKGKTVIESNKA---KVLNLNVPMCIGYRSRLSCRTE 355

Query: 309 ETSALGVIGSGGGGSSGGSHGYDNNGDGGNISNPGNSSSTANLFSIRSLFTKKVH 343
           E+       SGGG S+ GS   +NN    N  NP        LF  R+LF KKV+
Sbjct: 356 ES-------SGGGNSNIGSDNNNNNNANANNPNPN------GLFGFRNLFIKKVY 387

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IMB61.3e-14885.38uncharacterized protein LOC111478712 OS=Cucurbita maxima OX=3661 GN=LOC111478712... [more]
A0A6J1GDJ47.2e-14784.64uncharacterized protein LOC111453190 OS=Cucurbita moschata OX=3662 GN=LOC1114531... [more]
A0A1S3B0812.8e-14390.10dermokine OS=Cucumis melo OX=3656 GN=LOC103484641 PE=4 SV=1[more]
A0A5D3CM451.1e-14289.78Dermokine OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006170 PE=... [more]
A0A6J1EE911.5e-13983.49uncharacterized protein LOC111433517 OS=Cucurbita moschata OX=3662 GN=LOC1114335... [more]
Match NameE-valueIdentityDescription
XP_038883611.11.6e-16492.65uncharacterized protein LOC120074528 [Benincasa hispida][more]
XP_004134782.15.0e-15087.65uncharacterized protein LOC101203369 [Cucumis sativus] >KAE8647653.1 hypothetica... [more]
XP_022978897.12.7e-14885.38uncharacterized protein LOC111478712 [Cucurbita maxima][more]
XP_022949953.11.5e-14684.64uncharacterized protein LOC111453190 [Cucurbita moschata][more]
KAG7033972.12.5e-14683.43hypothetical protein SDJN02_03698, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT4G22190.11.2e-6452.11unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; B... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 304..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..165
NoneNo IPR availablePANTHERPTHR35132SERINE/ARGININE REPETITIVE MATRIX-LIKE PROTEINcoord: 22..293
NoneNo IPR availablePANTHERPTHR35132:SF3SUBFAMILY NOT NAMEDcoord: 22..293

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004600.1Lsi01G004600.1mRNA