Lsi01G004580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G004580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr01: 3814639 .. 3816211 (+)
RNA-Seq Expression	Lsi01G004580
Synteny	Lsi01G004580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGCAGACAGGTGGAACCAAACCGATCAAGTGCAGCGACAACCAGAAACGTCAAAAATATGGAAGTGATGGAGCAGGATTCTCAACCGGCGAGCATCCGATTGGGAATTCCGATGCTCCTCCACATCCTGAGGATGAAGATTCCCATATTTCCACAAGTGAAGATTCGGGAAGTTCCGGCGAGGAAACACGGTTGTCCGGCCTGGCAGAGAGCCTGCAAATCTTAACAAAGTCGCTGCTGACGGCGGAAATGGAGATTTTCAAGGCGATGGAGGTCATCCGCCTTGAGGAGGAAAAGAGGAGGCTGGAATCGGAGGCCGAGATGACTCGGATGCTGCTCCAGTGTCAGCTGCAAATCGCCTCGTTTGTATCGGCCAGGCAGAGTCCCAACAACCGGAAAAGGAAGCGAGTTCAGGAAGAAGATCCATCCTCTTCGGTCTCCTTAGAAAGGTAGAATAGAAACTTCAGCCTTCCTTAGCCAATCAGCAACAAGTTATAAACTGTTATATGATCTGATCTTGTTGATTGATACAGGAACGGGGCTCTGCTGCTAAGTCTAATTCAACTCAACATGATCAGCTTTTGAAGCTGCTATGCTATGGTTTAAATGGGAATCGTAGGAGTATACGATAAGTGTAACTGTATCGATCACCGAAGCACGGTATTGATCGATTTGTTGAATTTTCTTTTCCATTTCTATCTAAATTCTATGAGTTATGACTACTTCATTGGCATATAAAAAGCCTAGCAAGAAAGATCGTTTCGAGCTAAGTAGTAGGTAGCTGAGTCGATTAAGATAATCAAGCTAATTGAGTTTTCTTCGTGCGGATGTTGGAGTCCTTGATTTCATGGTCATCAATAGTTTGCAAAGCCTTGCGCCTGCTCATGGCACACTCGATATATTCTTCAAGGGGTGGAAGTATTCCATGTTCTCCAGTTTTCGATACTTTCCCTCGAATTATCTGTAAAAAGAAACCCAGAAAGAGAGGTTATACTTATGGCCACCAAAAAGGAACTCTAGGATCGATGAAATAAAGGACGGGTAGTTTGCCTTTGATGCCCATGAACGCTCGGCTTGCTGACAAATATCCCTGATGTCCCTTCCAGACATTCTGAAAATACATGCGAAGCGAAGCAAAAAGACAGTAGATTTAGAGATTGTTACAACTACATCCCTAGAAACAAAGAAGTCGACAAAACTATATTCTAGTGAGAGAGGCTTGTATTGTATGTGGACCATTAGCAGAATAGCAGACAAATACGAACAATGCCTAGACTACCGAAAGAAATCATATGTAGTTACGGGCCTACGATTAACTTACCCTTCTGTGTTTCTGGCGAACTCGCTCAATTCAGGTTTCGTTAGCTGCTTTGCATACTGAGCTGCTATTTCCTCCCGGTTCCGCTCATCAGGTAACCCAAATGTGATCATCAAGTCAAACCGACTAAACGAAAATTCAGGAAAAGAAATTAGTTCAGAAACCCAGCAACTTAGCATTCGGTTTTGTGCGCGCGCTCTTCTTCTTTTAATGCACATCGCAATCAATGTCGATAAATTTTTTTTTTAG

mRNA sequence

ATGGAAGAGCAGACAGGTGGAACCAAACCGATCAAGTGCAGCGACAACCAGAAACGTCAAAAATATGGAAGTGATGGAGCAGGATTCTCAACCGGCGAGCATCCGATTGGGAATTCCGATGCTCCTCCACATCCTGAGGATGAAGATTCCCATATTTCCACAAGTGAAGATTCGGGAAGTTCCGGCGAGGAAACACGGTTGTCCGGCCTGGCAGAGAGCCTGCAAATCTTAACAAAGTCGCTGCTGACGGCGGAAATGGAGATTTTCAAGGCGATGGAGGTCATCCGCCTTGAGGAGGAAAAGAGGAGGCTGGAATCGGAGGCCGAGATGACTCGGATGCTGCTCCAGTGTCAGCTGCAAATCGCCTCGTTTGTATCGGCCAGGCAGAGTCCCAACAACCGGAAAAGGAAGCGAGTTCAGGAAGAAGATCCATCCTCTTCGGAACGGGGCTCTGCTGCTAAGTCTAATTCAACTCAACATGATCAGCTTTTGAAGCTGCTATGCTATGGTTTAAATGGGAATCGTAGGAGTATACGATAAGTGTAACTGTATCGATCACCGAAGCACGGTATTGATCGATTTGTTGAATTTTCTTTTCCATTTCTATCTAAATTCTATGAGTTATGACTACTTCATTGGCATATAAAAAGCCTAGCAAGAAAGATCGTTTCGAGCTAAGTAGTAGGTAGCTGAGTCGATTAAGATAATCAAGCTAATTGAGTTTTCTTCGTGCGGATGTTGGAGTCCTTGATTTCATGGTCATCAATAGTTTGCAAAGCCTTGCGCCTGCTCATGGCACACTCGATATATTCTTCAAGGGGTGGAAGTATTCCATGTTCTCCAGTTTTCGATACTTTCCCTCGAATTATCTGTAAAAAGAAACCCAGAAAGAGAGGTTATACTTATGGCCACCAAAAAGGAACTCTAGGATCGATGAAATAAAGGACGGGTAGTTTGCCTTTGATGCCCATGAACGCTCGGCTTGCTGACAAATATCCCTGATGTCCCTTCCAGACATTCTGAAAATACATGCGAAGCGAAGCAAAAAGACAGTAGATTTAGAGATTGTTACAACTACATCCCTAGAAACAAAGAAGTCGACAAAACTATATTCTAGTGAGAGAGGCTTGTATTGTATGTGGACCATTAGCAGAATAGCAGACAAATACGAACAATGCCTAGACTACCGAAAGAAATCATATGTAGTTACGGGCCTACGATTAACTTACCCTTCTGTGTTTCTGGCGAACTCGCTCAATTCAGGTTTCGTTAGCTGCTTTGCATACTGAGCTGCTATTTCCTCCCGGTTCCGCTCATCAGGTAACCCAAATGTGATCATCAAGTCAAACCGACTAAACGAAAATTCAGGAAAAGAAATTAGTTCAGAAACCCAGCAACTTAGCATTCGGTTTTGTGCGCGCGCTCTTCTTCTTTTAATGCACATCGCAATCAATGTCGATAAATTTTTTTTTTAG

Coding sequence (CDS)

ATGGAAGAGCAGACAGGTGGAACCAAACCGATCAAGTGCAGCGACAACCAGAAACGTCAAAAATATGGAAGTGATGGAGCAGGATTCTCAACCGGCGAGCATCCGATTGGGAATTCCGATGCTCCTCCACATCCTGAGGATGAAGATTCCCATATTTCCACAAGTGAAGATTCGGGAAGTTCCGGCGAGGAAACACGGTTGTCCGGCCTGGCAGAGAGCCTGCAAATCTTAACAAAGTCGCTGCTGACGGCGGAAATGGAGATTTTCAAGGCGATGGAGGTCATCCGCCTTGAGGAGGAAAAGAGGAGGCTGGAATCGGAGGCCGAGATGACTCGGATGCTGCTCCAGTGTCAGCTGCAAATCGCCTCGTTTGTATCGGCCAGGCAGAGTCCCAACAACCGGAAAAGGAAGCGAGTTCAGGAAGAAGATCCATCCTCTTCGGAACGGGGCTCTGCTGCTAAGTCTAATTCAACTCAACATGATCAGCTTTTGAAGCTGCTATGCTATGGTTTAAATGGGAATCGTAGGAGTATACGATAA

Protein sequence

MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGSSGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQIASFVSARQSPNNRKRKRVQEEDPSSSERGSAAKSNSTQHDQLLKLLCYGLNGNRRSIR

Homology

[Close]

BLAST of Lsi01G004580 vs. ExPASy Swiss-Prot
Match: Q8L8L9 (Uncharacterized protein At4g22160 OS=Arabidopsis thaliana OX=3702 GN=At4g22160 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 5.7e-07
Identity = 47/124 (37.90%), Postives = 72/124 (58.06%), Query Frame = 0


Query: 38  NSDAPPHPEDE-DSHISTSEDSGSSGEETRLSGLAESLQILTKSLL---TAEMEIFKAME 97
           +SD P   + E +S+ S+  +S  S + T  +G++  +++L+ SLL    AEME+ KA E
Sbjct: 24  SSDDPYRSDSETESNSSSGTESNMSSDSTTSAGVSAMIRVLSDSLLRTELAEMEMIKARE 83

Query: 98  VIRLEEEKRRLESEAEMTRMLLQCQLQIASFV-----SARQSPNNRKRKRVQEEDPSSSE 153
             RLE EKRRLE E ++T+M+LQ  LQ  S +        Q+   RKR  V+E + S+ E
Sbjct: 84  AARLEAEKRRLEMEVDLTQMVLQTHLQAMSSLPVGEHKIYQAQRKRKRSDVEELESSTRE 143

[Close]

BLAST of Lsi01G004580 vs. ExPASy TrEMBL
Match: A0A0A0KHR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G512930 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.7e-60
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEEQTGGTKPIKC D+QKRQKYGSDGAGFSTG+ PIGNSD  PH EDE SHISTSEDSGS
Sbjct: 1   MEEQTGGTKPIKCRDDQKRQKYGSDGAGFSTGDLPIGNSDT-PHSEDEGSHISTSEDSGS 60

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SGEETRLSGLAESLQILTKSLLTAEMEIFKA EV+RLEEEKRRLESEAEMTRMLLQCQLQ
Sbjct: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKATEVMRLEEEKRRLESEAEMTRMLLQCQLQ 120

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SAR+SPNNRKRKRV+EEDPSSS
Sbjct: 121 IASFLSARESPNNRKRKRVKEEDPSSS 146

[Close]

BLAST of Lsi01G004580 vs. ExPASy TrEMBL
Match: A0A5D3CRX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006190 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.5e-60
Identity = 133/147 (90.48%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEEQTGGTKPIKC  +QKRQKYGSDGAGFSTG+ PIGN DAPPH EDEDSHISTSEDSGS
Sbjct: 1   MEEQTGGTKPIKCRGDQKRQKYGSDGAGFSTGDLPIGNLDAPPHSEDEDSHISTSEDSGS 60

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SGEE RLSGLAESLQILTKSLLTAEMEIFKA E IRLEEE+RRLESEAEMTRMLLQCQLQ
Sbjct: 61  SGEERRLSGLAESLQILTKSLLTAEMEIFKATEFIRLEEERRRLESEAEMTRMLLQCQLQ 120

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SA  SPNNRKRKRVQEEDPSSS
Sbjct: 121 IASFLSAMVSPNNRKRKRVQEEDPSSS 147

[Close]

BLAST of Lsi01G004580 vs. ExPASy TrEMBL
Match: A0A1S3AZS4 (uncharacterized protein LOC103484640 OS=Cucumis melo OX=3656 GN=LOC103484640 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.6e-58
Identity = 130/147 (88.44%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEEQTGGTKPIKC  +QKRQKYGSDGAGFSTG+ PIGN DAPPH EDEDSHISTSEDSGS
Sbjct: 1   MEEQTGGTKPIKCRGDQKRQKYGSDGAGFSTGDLPIGNLDAPPHSEDEDSHISTSEDSGS 60

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SGEE RLSGLAESLQILTKSLLTAEMEIFKA E IRLEEE+RRLESE EMT MLLQCQLQ
Sbjct: 61  SGEERRLSGLAESLQILTKSLLTAEMEIFKATEFIRLEEERRRLESEVEMTSMLLQCQLQ 120

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SA  SPN RKRKRVQEEDPSSS
Sbjct: 121 IASFLSAMVSPNIRKRKRVQEEDPSSS 147

[Close]

BLAST of Lsi01G004580 vs. ExPASy TrEMBL
Match: A0A6J1IKP0 (uncharacterized protein LOC111477923 OS=Cucurbita maxima OX=3661 GN=LOC111477923 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 6.4e-54
Identity = 124/147 (84.35%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEE TGGTKPIKCS++QK QKYG   AG S+ E  IGNSDAPPH E E SHIST EDSGS
Sbjct: 37  MEEPTGGTKPIKCSEDQKHQKYGRYAAGSSSDELLIGNSDAPPHSEAETSHISTGEDSGS 96

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SGEETRLSGLAESLQILTKSLLTAEMEIFKA E IRLEEEKRRLESEAEMTRMLLQCQ+Q
Sbjct: 97  SGEETRLSGLAESLQILTKSLLTAEMEIFKAREAIRLEEEKRRLESEAEMTRMLLQCQMQ 156

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SARQ PNNRKRKRVQEE+PS S
Sbjct: 157 IASFLSARQGPNNRKRKRVQEEEPSPS 183

[Close]

BLAST of Lsi01G004580 vs. ExPASy TrEMBL
Match: A0A6J1GEE5 (uncharacterized protein At4g22160 OS=Cucurbita moschata OX=3662 GN=LOC111453191 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.9e-53
Identity = 123/147 (83.67%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEE TGGTKPIKCS++QKRQKYG   AG S+ E  IGNSDAPPH E E SHIST EDSGS
Sbjct: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPHSETETSHISTGEDSGS 60

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SGEET LSGLAESLQILTKSLLTAEMEIF+A E IRLEEEKRRLESEAEMTRMLLQCQ+Q
Sbjct: 61  SGEETGLSGLAESLQILTKSLLTAEMEIFRAREAIRLEEEKRRLESEAEMTRMLLQCQMQ 120

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SARQ PNNRKRKRVQEE+PS S
Sbjct: 121 IASFLSARQGPNNRKRKRVQEEEPSPS 147

[Close]

BLAST of Lsi01G004580 vs. NCBI nr
Match: XP_038882486.1 (uncharacterized protein LOC120073739 [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 137/147 (93.20%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEEQTGGTKPIKCSD+QKRQKYGSDGAG STGE PIGNSDAPPHPEDEDSHISTSE SGS
Sbjct: 1   MEEQTGGTKPIKCSDDQKRQKYGSDGAGLSTGELPIGNSDAPPHPEDEDSHISTSEGSGS 60

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SG+ETRL+GLAESLQILT+SLLTAEMEIFKA E+IRLEEEKRRLESEAEMTRMLLQCQLQ
Sbjct: 61  SGQETRLAGLAESLQILTRSLLTAEMEIFKAREIIRLEEEKRRLESEAEMTRMLLQCQLQ 120

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SARQSPNNRKRKRVQEEDPSSS
Sbjct: 121 IASFLSARQSPNNRKRKRVQEEDPSSS 147

[Close]

BLAST of Lsi01G004580 vs. NCBI nr
Match: XP_004134781.1 (uncharacterized protein LOC101203124 [Cucumis sativus] >KGN49078.1 hypothetical protein Csa_004162 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-60
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEEQTGGTKPIKC D+QKRQKYGSDGAGFSTG+ PIGNSD  PH EDE SHISTSEDSGS
Sbjct: 1   MEEQTGGTKPIKCRDDQKRQKYGSDGAGFSTGDLPIGNSDT-PHSEDEGSHISTSEDSGS 60

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SGEETRLSGLAESLQILTKSLLTAEMEIFKA EV+RLEEEKRRLESEAEMTRMLLQCQLQ
Sbjct: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKATEVMRLEEEKRRLESEAEMTRMLLQCQLQ 120

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SAR+SPNNRKRKRV+EEDPSSS
Sbjct: 121 IASFLSARESPNNRKRKRVKEEDPSSS 146

[Close]

BLAST of Lsi01G004580 vs. NCBI nr
Match: TYK13019.1 (uncharacterized protein E5676_scaffold255G006190 [Cucumis melo var. makuwa])

HSP 1 Score: 241.1 bits (614), Expect = 7.2e-60
Identity = 133/147 (90.48%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEEQTGGTKPIKC  +QKRQKYGSDGAGFSTG+ PIGN DAPPH EDEDSHISTSEDSGS
Sbjct: 1   MEEQTGGTKPIKCRGDQKRQKYGSDGAGFSTGDLPIGNLDAPPHSEDEDSHISTSEDSGS 60

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SGEE RLSGLAESLQILTKSLLTAEMEIFKA E IRLEEE+RRLESEAEMTRMLLQCQLQ
Sbjct: 61  SGEERRLSGLAESLQILTKSLLTAEMEIFKATEFIRLEEERRRLESEAEMTRMLLQCQLQ 120

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SA  SPNNRKRKRVQEEDPSSS
Sbjct: 121 IASFLSAMVSPNNRKRKRVQEEDPSSS 147

[Close]

BLAST of Lsi01G004580 vs. NCBI nr
Match: XP_008440047.1 (PREDICTED: uncharacterized protein LOC103484640 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-57
Identity = 130/147 (88.44%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEEQTGGTKPIKC  +QKRQKYGSDGAGFSTG+ PIGN DAPPH EDEDSHISTSEDSGS
Sbjct: 1   MEEQTGGTKPIKCRGDQKRQKYGSDGAGFSTGDLPIGNLDAPPHSEDEDSHISTSEDSGS 60

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SGEE RLSGLAESLQILTKSLLTAEMEIFKA E IRLEEE+RRLESE EMT MLLQCQLQ
Sbjct: 61  SGEERRLSGLAESLQILTKSLLTAEMEIFKATEFIRLEEERRRLESEVEMTSMLLQCQLQ 120

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SA  SPN RKRKRVQEEDPSSS
Sbjct: 121 IASFLSAMVSPNIRKRKRVQEEDPSSS 147

[Close]

BLAST of Lsi01G004580 vs. NCBI nr
Match: XP_023544081.1 (uncharacterized protein LOC111803775 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-54
Identity = 126/147 (85.71%), Postives = 132/147 (89.80%), Query Frame = 0


Query: 1   MEEQTGGTKPIKCSDNQKRQKYGSDGAGFSTGEHPIGNSDAPPHPEDEDSHISTSEDSGS 60
           MEE TGGTKPIKCS++QKRQKYG   AG S+ E  IGNSDAPPH E E SHIST EDSGS
Sbjct: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPHSEAETSHISTGEDSGS 60

Query: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAMEVIRLEEEKRRLESEAEMTRMLLQCQLQ 120
           SGEETRLSGLAESLQILTKSLLTAEMEIFKA EVIRLEEEKRRLESEAEMTRMLLQCQ+Q
Sbjct: 61  SGEETRLSGLAESLQILTKSLLTAEMEIFKAREVIRLEEEKRRLESEAEMTRMLLQCQMQ 120

Query: 121 IASFVSARQSPNNRKRKRVQEEDPSSS 148
           IASF+SARQ PNNRKRKRVQEE+PS S
Sbjct: 121 IASFLSARQGPNNRKRKRVQEEEPSPS 147

[Close]

BLAST of Lsi01G004580 vs. TAIR 10
Match: AT4G22160.2 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-08
Identity = 47/124 (37.90%), Postives = 72/124 (58.06%), Query Frame = 0


Query: 38  NSDAPPHPEDE-DSHISTSEDSGSSGEETRLSGLAESLQILTKSLL---TAEMEIFKAME 97
           +SD P   + E +S+ S+  +S  S + T  +G++  +++L+ SLL    AEME+ KA E
Sbjct: 24  SSDDPYRSDSETESNSSSGTESNMSSDSTTSAGVSAMIRVLSDSLLRTELAEMEMIKARE 83

Query: 98  VIRLEEEKRRLESEAEMTRMLLQCQLQIASFV-----SARQSPNNRKRKRVQEEDPSSSE 153
             RLE EKRRLE E ++T+M+LQ  LQ  S +        Q+   RKR  V+E + S+ E
Sbjct: 84  AARLEAEKRRLEMEVDLTQMVLQTHLQAMSSLPVGEHKIYQAQRKRKRSDVEELESSTRE 143

[Close]

BLAST of Lsi01G004580 vs. TAIR 10
Match: AT4G22160.1 (unknown protein; Has 42 Blast hits to 42 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 9.0e-08
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 38  NSDAPPHPEDE-DSHISTSEDSGSSGEETRLSGLAESLQILTKSLL---TAEMEIFKAME 97
           +SD P   + E +S+ S+  +S  S + T  +G++  +++L+ SLL    AEME+ KA E
Sbjct: 24  SSDDPYRSDSETESNSSSGTESNMSSDSTTSAGVSAMIRVLSDSLLRTELAEMEMIKARE 83

Query: 98  VIRLEEEKRRLESEAEMTRMLLQCQLQIASFVSARQS---PNNRKRKRVQEEDPSSSER 150
             RLE EKRRLE E ++T+M+LQ  LQ  S +   +       RKRKR   E+  SS R
Sbjct: 84  AARLEAEKRRLEMEVDLTQMVLQTHLQAMSSLPVGEHKIYQAQRKRKRSDVEELESSTR 142

The following BLAST results are available for this feature:

BLAST of Lsi01G004580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8L9	5.7e-07	37.90	Uncharacterized protein At4g22160 OS=Arabidopsis thaliana OX=3702 GN=At4g22160 P...	[more]

BLAST of Lsi01G004580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHR9	2.7e-60	91.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G512930 PE=4 SV=1	[more]
A0A5D3CRX4	3.5e-60	90.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AZS4	5.6e-58	88.44	uncharacterized protein LOC103484640 OS=Cucumis melo OX=3656 GN=LOC103484640 PE=...	[more]
A0A6J1IKP0	6.4e-54	84.35	uncharacterized protein LOC111477923 OS=Cucurbita maxima OX=3661 GN=LOC111477923...	[more]
A0A6J1GEE5	1.9e-53	83.67	uncharacterized protein At4g22160 OS=Cucurbita moschata OX=3662 GN=LOC111453191 ...	[more]

BLAST of Lsi01G004580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882486.1	1.1e-63	93.20	uncharacterized protein LOC120073739 [Benincasa hispida]	[more]
XP_004134781.1	5.5e-60	91.16	uncharacterized protein LOC101203124 [Cucumis sativus] >KGN49078.1 hypothetical ...	[more]
TYK13019.1	7.2e-60	90.48	uncharacterized protein E5676_scaffold255G006190 [Cucumis melo var. makuwa]	[more]
XP_008440047.1	1.2e-57	88.44	PREDICTED: uncharacterized protein LOC103484640 [Cucumis melo]	[more]
XP_023544081.1	1.2e-54	85.71	uncharacterized protein LOC111803775 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G004580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22160.2	4.0e-08	37.90	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT4G22160.1	9.0e-08	39.50	unknown protein; Has 42 Blast hits to 42 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 94..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004580.1	Lsi01G004580.1	mRNA