Lsi01G004490 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G004490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Pectate lyase
Location	chr01: 3750366 .. 3757212 (-)
RNA-Seq Expression	Lsi01G004490
Synteny	Lsi01G004490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATTTCCTCTATAAGTATTTTTTTTTTTTCAAGGTAAAGGAAACACTTAAAAAGATATGTTTAGGAGTGATTTTCATAATGTCAACTTTTTCTCTAGCCAAAAATCTCTTTTGATTTAAAAATTTATGCTTGGAAAATGTTAAAATTGATTTTAATGGAGGGATTACAAATTTGCCCACATTTTTTTTAGTAAAATTTTGGAAAATTTTTAAAAATAGAAAAGTAAGAAAAACGATTTACACAAAATAGTAAAATTTTTAGATAGTTGTGATAGATGCTGATAGAAGTCTATCAGGGTCTATCAATGATAAAAATTATAAAAGTCTATCACTAATAGATGCATATAGAAATTTATCAATATCTATCATTGTTTTTTTGCTATTTTCTGTAAATATTTTGACATTTTTTTTTATTTATGAAAATTTTCTTAAAATTTTTCCAACTAATATATGGATCATTTTTTAAAATAAAAAATAAAAAAGATATTTTTTTTTGGATAATTTAGTAATTCTAACATCGCTTTTAAAATCCTACATAATATTGAAACTCAAAATCAAATTTTAAAAATTTGAAACCAAATCATATTACAAACATTAATATGATTGAATGACATTTAGTTTTACAAAATTAAGTGTATCTAAATATTTTTTTCTAAAATCAATACTTCAACCATGGGTTCCAAAGATGTAAAATTAATGCTCTCATATCACTTTTAGTTATTTAAACCAAATAATGCGGAAAAAAATCTATAAAAAAAAAATCATGCTTTTCCAATAGATGAGAATATGTGCTTTTCTTCGACAAATAGAGAATAAATCATTTCCAAGCAGGTTTTTCATAATTTTAGGGAACAATCAGAATCGATAATTTGATATGCATATATAATTAAATATATATTTTCTTCTTTTACAGTTCTTTTTTTGGGGTTTCAGGGAAGCTGGCTAAGAGATGTTAACATTACAAAGGGTTTGCTTTTTCTTTCTGCATATCTAATAACTTTTACTTTACTCGAGTTTTTCTTTTTGGCCGTAAAGAAAGGAGTTTCAAATCAATAATGTTTCAGTCCCACCATCCAACTTTTCGGCTGTTTTCTATTTTCTATATATACACACACATATTTATTTGATTTCTTTCAATATTAATTAAATAAAAGTGAATAGCCAAATTAGACTTCATAAAATGTATAAGAATATTTTTAATATATGTGTGGTTTTCAACTCTATGAATTAGTTGTTTTGAATGTTTAAGTAGAAGAGGGATTACATGAATGAATCAACACCGTATGTCGAAATGAACGGGATCCTAAGAACTACGCAAAGATTGTTAAAGAAAAAGACTTAAAAGAATAATTAATATATTGTTAAAATATCATTTTAATTTCTGTACTTTGAAATTTGTTCAATTTTAGTTCGTGTACTTTCAAATTTTTAATTTTAGTCCATATATTTTCAATAAAACTTAAATTTAGTTCTCATTGATATGCTTATTGTTGATTTTTTTTCTTTTTTAAAAAAATAGTTATCTATTAGAATTTTTACTATAAATTTTAAAAACATATTCACATATATTTTATTTCTTCTATAAAAATTAGGAAAATTTTCATAGATAGAATAAATGTCAAACTATTTACAGAAAATAGCAAAAAAAATATTGATAGACGTTGATAAACTTCTATCAATATCTATCAGCAATAGATTTCTACTATTTCTATCACTGATAAATCTTGATAGACTTCTATCGGCGTCTATAGTCTATCAGGGTCTATTACAACTATCTAAAATTTTTGCTATTTTGTATAAATAACTTTCCTTATTTTAAAATTTTAAAATTTTTTTCTACAAATTATTATTATTATTTAACCAATTTCGGTAAAAATTAACTTTCAGGAACTTGATTTAAGATTTTATTGAAGTACATGATCTAAAATTGGACATTTAAAAGTATAGGGATTAAAATTGAATAAATCTCAAAGTACGGGGATCAAAATGACATTTTAACCTTGATATATTTATTACCTACATATAACAAAAAGGTTGGCATTGTTTTTCAATGGCTTAATATGATAGGATCAAAATTCCGACGAAGTTAAGCGTGTTTGATCTAACAACAAATGATATGTTAAGTGACTTCTTGAGAACTTTTCCAATAATGATGTGAGTGAATACAAAACATATTGAAAGAACATAGGTCACACCAAGTTACAAGAATGTAGGAGCTGCATATACAAAACATATTGATTAGTTTAACTAATTAAAAGACATTTAATTAGAACTTTTTTTTTCAAAAGGTAAGAATTTAAATGATAAATATAATCATTCTAAGTTAGTTTAGTGGTAGTAGGAACATAAAAAAAGGCAAAAAAACTAAAAAAAATCATGATACTATTGCTCTAAACTAGACTGCTTTTATGTTTCTCATCTCTAATATGCTTTTCACTTATAATAAAAGTATCATTTTCTCTTAAGTTCAATGTAATGACCTATTATATATCAATACAAAAACTAAAAGTAGCTAGCATTTAAAAAATAACGTGGGTCCATGATATAAACTAGCAAATCATTTCACAAAGTGTCACAATTATATCATGAATTGAGAGAGGAAACAAATTTTCTCACAAAGTTATTTTATGTTAACCAAAAGTGAAAAGACAAATAGGTCCTTGCAGCATCATTTTCAATATTCACAAGAAACCGCCCTCAACAAAGTCCCAATCCCAATAACATACAAATCATATATAATAATAATAATAATAATATAAACACATAATTCTACTCAATCTTTGAGTATTATTACCCTAAACCCTCTGAATTAATATTAAATAAACAAAAAAGAAAAACCAAATTATCTCGTGCAAGCACGTTTCAACTAAGTATCTCGTGCAAATACGTCACATATCAAGCAACAAAGTGGTGGAAGTGTAACCACGAATAAATACACCACCAAATCCCTACCAAAATCTGGGCATTAGACGCCCCGGGCCAGCCAATATCGTGTGTTCCATCAATTAAACTCTCACATTTTCCCTATAATTCACTCAAATTTTCTAAAACAAAAAACTCACCCAATAAGCAAATCCCAGCGCCCATGGCTTTCCCATTATTATTCCTTTTTTTCCTACCCACAATTATCTCCACGGCCAGCCTCAACAACTACTATAACAAACCAGCTCTTAACCCCATCGACGCATGCTGGCGGAGCAGCCCCAATTGGGCAGCCAACCGCCGCGCCCTGGCCGACTGCGCCGTGGGGTTCGGCAGTGACGCCACGGGAGGCAAATTCGGGTCAATTTACGTGGTCACAGACCCATCGGACGACCCGGAATTTCCGGAACCCGGAACGCTGCGTTTTGGGGTGATTCAAACGCAGCCATTATGGATTGTATTCGCAAGAGATATGGTGATTACCCTTGAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGCCGAGGGGCAAAAGTGGAAATTAGCAATGGGCCATGTATTACCATTCAAGACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCCGGGCGCGTGAGGAGCACCGTCACTCACTGTGGGGACCGCCAAGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCGTCCACTGCCGTCACCATCTCCAACAATTACTTCACTCAACATAATAAAGTAGGCCCCACAAAATTAGTTATCTAACATATTTAATTCCTTCGAAATGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACCATAAACTAACTATATCTACCACATATATATTTGTACTTTTAATTAAATTTTTTATCCAAATTCATTTCTTAAAAACTATACAACACTTTTTGGAATGTAAATTGTTTATATATTTATAAACTTCTTTGGATAATTTTTGTTTTCAACGTTTGACTAAAATATATACCAACTTTTCGAAACATATTCAATTGTAATTTCAAATTTTATTTTGAAAAAAAAAACCAATGTTAAAACGGTTTTCAACTTACTTTTGGTCTATATTTTAGAACATGCTTATAATTTGACATCAACGTTGTTCAATAATTTATCATGGTAGGAAACAATTAGTAAATGAACAAAACAATAATTATCACAATGGTGTGAAAGTGCGTTTGGTTTAACGGTATTGGCATGCAATGCGTCTTTAGGAGGTTAGCCAAAGTTTAAATCTAAACAAATAATTTTTAAAAATTTGTTTTTGAAATTTAAAATTTGATTAAGAATTCAACTCTTTTACTTAAAAAATAAGCTAATCATTATCAGAAATTGAAAGGAAATAAACTTAATTTTCAAAAATAAAAAAGAAAATAGTTATCAAACTTTTAATTTTGAAAACTTGAGTTTTAAAAAAAATTCCAAAAAAAAAAAAAAAAAAGTAAATAACAAAATACATAAATTAATATGTGAATGTAATATTTATAATTAAGTTTGCTTTATGAAAACAAAGAACTAAAAACTAAGACTCCATTTTGATAAACTATTTGATTTTTTATTGTATGGTTTTAAAAATTATGTTTGTTTTCTTACAACTTCATCACCACGAATTATATATTTTCTAACTAAACATCTTATTTATTAGCTAAATTTCAAAAATAAAACAAAAAATTTAAACTATTTGGTTTTTTAATTTTTAAAACATAGGTTAGGATTTTGAAAACATGAGTAGATGGTAGATATATAACAAAACAAATAAATTTAGAGGTGTAAAATGCATATATAGGTTTAATATAATTTTTAAAAAGCAAATGATTATGAAATAGGAATTTCAACTCAAAACAACAAATTTAAATAAAAAGTTCGAGTAATTAATAATGAACTAATGTTGTTGTAGGTGATCCTTCTTGGTCACAACGACGACTTTACAGAGGATAGAATCATGAGAGTGACGGTAGCATTCAACCGTTTTGGCGCTGGGCTTGTTCAAAGAATGCCCAGGTAATTAATTTAATTTAAATTAGAAAACAAGAAGAACAAATAAAAGCCACTTGTTTTTTTCTTCATAACGAATTAAATATTGAATTTATTTGATAAAAAAAAAAATATATTTTGCAGGGTGAGATTTGGGTATGCCCATGTTGCCAATAATTGGTATAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCTAATGACCCACTCTCAAAGCAGGTAATTTAATATATAGTATTGGTATAATTAAATTTACCGTAACTCATTAATAGTTCATATTTTGTGTTGATAGAATTAAAATGTTTAAATATATAGTTTCGATCTCTTGATAATAACGAGATGGGATTGTTGTAGGTTACAAAGAGAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTCATCCCAACTGGGTGGGGATCTTGTGCGCCGTTCTACACTCGAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCTCCTCTTTTGACTGCAACCGCAGGCACTTTGACTTGTGTTCTTGGTAAACCTTGTTGA

mRNA sequence

ATGACGCCCATGGCTTTCCCATTATTATTCCTTTTTTTCCTACCCACAATTATCTCCACGGCCAGCCTCAACAACTACTATAACAAACCAGCTCTTAACCCCATCGACGCATGCTGGCGGAGCAGCCCCAATTGGGCAGCCAACCGCCGCGCCCTGGCCGACTGCGCCGTGGGGTTCGGCAGTGACGCCACGGGAGGCAAATTCGGGTCAATTTACGTGGTCACAGACCCATCGGACGACCCGGAATTTCCGGAACCCGGAACGCTGCGTTTTGGGGTGATTCAAACGCAGCCATTATGGATTGTATTCGCAAGAGATATGGTGATTACCCTTGAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGCCGAGGGGCAAAAGTGGAAATTAGCAATGGGCCATGTATTACCATTCAAGACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCCGGGCGCGTGAGGAGCACCGTCACTCACTGTGGGGACCGCCAAGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCGTCCACTGCCGTCACCATCTCCAACAATTACTTCACTCAACATAATAAAGTGATCCTTCTTGGTCACAACGACGACTTTACAGAGGATAGAATCATGAGAGTGACGGTAGCATTCAACCGTTTTGGCGCTGGGCTTGTTCAAAGAATGCCCAGGGTGAGATTTGGGTATGCCCATGTTGCCAATAATTGGTATAACAAGTGGGAAATAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTCATCCCAACTGGGTGGGGATCTTGTGCGCCGTTCTACACTCGAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCTCCTCTTTTGACTGCAACCGCAGGCACTTTGACTTGTGTTCTTGGTAAACCTTGTTGA

Coding sequence (CDS)

ATGACGCCCATGGCTTTCCCATTATTATTCCTTTTTTTCCTACCCACAATTATCTCCACGGCCAGCCTCAACAACTACTATAACAAACCAGCTCTTAACCCCATCGACGCATGCTGGCGGAGCAGCCCCAATTGGGCAGCCAACCGCCGCGCCCTGGCCGACTGCGCCGTGGGGTTCGGCAGTGACGCCACGGGAGGCAAATTCGGGTCAATTTACGTGGTCACAGACCCATCGGACGACCCGGAATTTCCGGAACCCGGAACGCTGCGTTTTGGGGTGATTCAAACGCAGCCATTATGGATTGTATTCGCAAGAGATATGGTGATTACCCTTGAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGCCGAGGGGCAAAAGTGGAAATTAGCAATGGGCCATGTATTACCATTCAAGACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCCGGGCGCGTGAGGAGCACCGTCACTCACTGTGGGGACCGCCAAGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCGTCCACTGCCGTCACCATCTCCAACAATTACTTCACTCAACATAATAAAGTGATCCTTCTTGGTCACAACGACGACTTTACAGAGGATAGAATCATGAGAGTGACGGTAGCATTCAACCGTTTTGGCGCTGGGCTTGTTCAAAGAATGCCCAGGGTGAGATTTGGGTATGCCCATGTTGCCAATAATTGGTATAACAAGTGGGAAATAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTCATCCCAACTGGGTGGGGATCTTGTGCGCCGTTCTACACTCGAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCTCCTCTTTTGACTGCAACCGCAGGCACTTTGACTTGTGTTCTTGGTAAACCTTGTTGA

Protein sequence

MTPMAFPLLFLFFLPTIISTASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGFGSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNSFKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTEDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEIEVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLAPLLTATAGTLTCVLGKPC

Homology

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BLAST of Lsi01G004490 vs. ExPASy Swiss-Prot
Match: O65388 (Putative pectate lyase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g11920 PE=3 SV=2)

HSP 1 Score: 489.6 bits (1259), Expect = 3.0e-137
Identity = 238/374 (63.64%), Postives = 282/374 (75.40%), Query Frame = 0


Query: 8   LLFLFFLPTIISTASLNNYYNKPAL-NPIDACWRSSPNWAANRRALADCAVGFGSDATGG 67
           LLF  F  +++  A  N Y     L NPID+CWR +P WA+NRRALADCAVGFG  A GG
Sbjct: 11  LLFAAFSSSVVEAAYSNGYTIPKLLPNPIDSCWRRNPYWASNRRALADCAVGFGKSAVGG 70

Query: 68  KFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNSFKTIDGR 127
           K+GSIYVVT+PSDDPE P PGTLR+ VIQ++PLWI FARDMVI L  EL++NS+KTIDGR
Sbjct: 71  KYGSIYVVTNPSDDPENPRPGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGR 130

Query: 128 GAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGDAISIFS 187
           GAKVEI+ GPCITIQ VSHVIIHGISIHDCKPGK GRVRS+ TH G R+ SDGDAI+IF 
Sbjct: 131 GAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIFD 190

Query: 188 SSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTEDRIMRVTV 247
           SSHIWIDHC+ +RC DGLIDV+HASTAVTISNNYFTQH+KV+LLGHND+  ED+IMRVT+
Sbjct: 191 SSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTI 250

Query: 248 AFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI---------EVYANG------------ 307
           AFN FG GL++RMPRVR GYAHVANN Y KW++          +++ G            
Sbjct: 251 AFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSEGNYFVASDDPSKK 310

Query: 308 -----------WKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLAPLLT 349
                      WK+WKWR+S DVF NGAYF+P+G+G+  P Y RA+ F V+HGSL PLLT
Sbjct: 311 QVTKRIDSGYDWKRWKWRTSKDVFKNGAYFVPSGYGTVTPLYGRAERFPVSHGSLVPLLT 370

[Close]

BLAST of Lsi01G004490 vs. ExPASy Swiss-Prot
Match: O65456 (Probable pectate lyase 16 OS=Arabidopsis thaliana OX=3702 GN=At4g22080 PE=2 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 2.4e-126
Identity = 229/385 (59.48%), Postives = 271/385 (70.39%), Query Frame = 0


Query: 8   LLFLFFLPTIISTASLNNYY-----------NKP--ALNPIDACWRSSPNWAANRRALAD 67
           LL + FL   +  A  N YY            KP   +NP+D+CWR   +WAANR+ LAD
Sbjct: 9   LLVVLFLCHSLVHAENNGYYGYTPTVANYLPEKPQNIMNPVDSCWRLKSDWAANRKDLAD 68

Query: 68  CAVGFGSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERE 127
           C VGFGS   GGK G++YVVT+P D+ + P+PG+LR+GVIQ +PLWI FA+DMVITLE E
Sbjct: 69  CVVGFGSSTLGGKKGNLYVVTNPYDNAQNPQPGSLRYGVIQAKPLWITFAKDMVITLENE 128

Query: 128 LMVNSFKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDR 187
           LMVNS+KTIDGRGAKVEI+ GPCITIQDV++VI+HGISIHDCKPGK G VRS+ TH G R
Sbjct: 129 LMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKYGMVRSSPTHVGHR 188

Query: 188 QESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHND 247
           + SDGDAI+IF SS+IWIDHCYLA CTDGLIDVIHAST +TISNNYFTQH+KV+LLGHND
Sbjct: 189 KGSDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDKVMLLGHND 248

Query: 248 DFTEDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEIEVYA----------- 307
           DF +D  M+VTVAFN FG GLV+RMPRVR GYAHVANN Y+KW +               
Sbjct: 249 DFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEG 308

Query: 308 --------------------NGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFA 349
                                GW  W+WR+S DVF NGAYF+P+G+GS +  Y+ AQ F 
Sbjct: 309 NYFIASDKSNSKEVTKREVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSISLPYSSAQRFT 368

[Close]

BLAST of Lsi01G004490 vs. ExPASy Swiss-Prot
Match: O65457 (Putative pectate lyase 17 OS=Arabidopsis thaliana OX=3702 GN=At4g22090 PE=3 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 3.4e-125
Identity = 227/385 (58.96%), Postives = 269/385 (69.87%), Query Frame = 0


Query: 8   LLFLFFLPTIISTASLNNYYN-KPA------------LNPIDACWRSSPNWAANRRALAD 67
           LL   FL   +  A+ N YY   PA            +NP+D+CWR   +W  NR  LAD
Sbjct: 9   LLVALFLCQSLVHAAYNGYYGYSPAAAPYPAEEPQNIMNPVDSCWRLKSDWDVNREDLAD 68

Query: 68  CAVGFGSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERE 127
           CAVGFGS   GGK G+IYVVT+P D+ + P PG+LR+GVIQ +PLWI FA+DMVITL  E
Sbjct: 69  CAVGFGSSTLGGKKGNIYVVTNPYDNAQNPHPGSLRYGVIQAKPLWITFAKDMVITLANE 128

Query: 128 LMVNSFKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDR 187
           LMVNS+KTIDGRGAKVEI+ GPCITIQDV++VI+HGISIHDCKPGK G+VRS+ TH G R
Sbjct: 129 LMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKSGKVRSSPTHVGHR 188

Query: 188 QESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHND 247
           + SDGDAI+IF SS++WIDHCYLA CTDGLIDVIHASTA+TISNNYFTQH+KV+LLGHND
Sbjct: 189 KGSDGDAITIFGSSNVWIDHCYLASCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHND 248

Query: 248 DFTEDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEIEVYA----------- 307
           +F +D  M+VTVAFN FG GLV+RMPRVR GYAHVANN Y+KW +               
Sbjct: 249 NFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEG 308

Query: 308 --------------------NGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFA 349
                                GW  W+WR+SNDVF NGA+F+P+G+GS    Y+ AQ F 
Sbjct: 309 NYFIASDKSYSKEVTKREVKGGWNNWRWRTSNDVFKNGAFFVPSGYGSIPLPYSSAQRFT 368

[Close]

BLAST of Lsi01G004490 vs. ExPASy Swiss-Prot
Match: Q9C8G4 (Probable pectate lyase 4 OS=Arabidopsis thaliana OX=3702 GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 3.4e-109
Identity = 203/373 (54.42%), Postives = 249/373 (66.76%), Query Frame = 0


Query: 8   LLFLFFLPTIISTASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGFGSDATGGK 67
           LL  F  P + +  S N    + +LNPIDACWR +P WA NR+ALA CAVG+G  A GGK
Sbjct: 11  LLAAFASPLLETAHSYNVTAPRVSLNPIDACWRRNPKWATNRQALAHCAVGYGKAAIGGK 70

Query: 68  FGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNSFKTIDGRG 127
            G IYVVT+PSD+P  P PGTLR+ V Q +PLWI FARDMVI L+ +LM+NS+KTIDGRG
Sbjct: 71  NGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRG 130

Query: 128 AKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGDAISIFSS 187
           AKVEI+NGPC+ I+ V HVIIHGISIHDCK               D    DGD I +F S
Sbjct: 131 AKVEIANGPCLRIRQVKHVIIHGISIHDCK--------------ADPNGMDGDGIRVFQS 190

Query: 188 SHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTEDRIMRVTVA 247
           +H+WIDHC+L+RC DGLIDVI +STAVTISNNYFTQH+KV+LLGH+D +  D+ MRVT+A
Sbjct: 191 THVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDMRVTIA 250

Query: 248 FNRFGAGLVQRMPRVRFGYAHVANNWYNKWEIE---------VYANG------------- 307
           FN FG GL++RMPRVR GYAHVANN Y KW++          +++ G             
Sbjct: 251 FNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEKRSSKQ 310

Query: 308 ----------WKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLAPLLTA 349
                      K+WKW +S DVF+NGA+F P G     P Y   + F VAHGSL P LT+
Sbjct: 311 VTKRMMAGPDSKRWKWGTSRDVFMNGAFFGPPG-VIVRPLYKGGEGFRVAHGSLVPSLTS 368

[Close]

BLAST of Lsi01G004490 vs. ExPASy Swiss-Prot
Match: Q944R1 (Probable pectate lyase 15 OS=Arabidopsis thaliana OX=3702 GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.3e-103
Identity = 185/350 (52.86%), Postives = 234/350 (66.86%), Query Frame = 0


Query: 33  NPIDACWRSSPNWAANRRALADCAVGFGSDATGGKFGSIYVVTDPSD-DPEFPEPGTLRF 92
           NPID CWR   NW  NR+ LADC +GFG +A GG+ G  Y+VTDP+D D   P+PGTLR 
Sbjct: 122 NPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRH 181

Query: 93  GVIQTQPLWIVFARDMVITLERELMVNSFKTIDGRGAKVEISNGPCITIQDVSHVIIHGI 152
            VIQ +PLWIVF RDMVI L++EL++NSFKTID RG+ V I+NG CITIQ +++VIIHG+
Sbjct: 182 AVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGL 241

Query: 153 SIHDCKPGKPGRVRSTVTHCGDRQESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHAS 212
            IHDCKP     VRS+ +H G R  +DGDA+SIF SSHIWIDH  L+ C DGL+D +  S
Sbjct: 242 HIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGS 301

Query: 213 TAVTISNNYFTQHNKVILLGHNDDFTEDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVAN 272
           TA+T+SNN+FT HN+V+LLGH+D +T+D++M+VT+A+N FG GLVQRMPR R GY HV N
Sbjct: 302 TAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVN 361

Query: 273 NWYNKWE---------------------------------IEVYANGWKKWKWRSSNDVF 332
           N Y  WE                                 +E  A+ WKKW WRS  D+ 
Sbjct: 362 NDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLL 421

Query: 333 LNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLAPLLTATAGTLTCVLGKPC 349
           LNGA+F P+G G+ A  Y RA + A    S+   +T+TAG L C  G+PC
Sbjct: 422 LNGAFFRPSGAGASAS-YGRASSLAAKPSSMVDTITSTAGALGCRKGRPC 470

[Close]

BLAST of Lsi01G004490 vs. ExPASy TrEMBL
Match: A0A5D3CRJ6 (Pectate lyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006270 PE=3 SV=1)

HSP 1 Score: 637.1 bits (1642), Expect = 4.3e-179
Identity = 312/382 (81.68%), Postives = 328/382 (85.86%), Query Frame = 0


Query: 4   MAFPLL----FLFFLPTIISTASLNNYYNKP-ALNPIDACWRSSPNWAANRRALADCAVG 63
           MAFPLL    FL FLPTIIST   NNYY+KP +LNPIDACWR++PNWAANRRALADCAVG
Sbjct: 1   MAFPLLLLSIFLSFLPTIISTPKPNNYYDKPISLNPIDACWRNNPNWAANRRALADCAVG 60

Query: 64  FGSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVN 123
           FGSDA GGKFGSIYVVTDPSDDPE+PEPGTLRFGVIQ +PLWIVFARDM ITL+RELMVN
Sbjct: 61  FGSDALGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQLKPLWIVFARDMAITLKRELMVN 120

Query: 124 SFKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESD 183
           SFKTIDGRGAKVEISNGPC+TIQ+VSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESD
Sbjct: 121 SFKTIDGRGAKVEISNGPCVTIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESD 180

Query: 184 GDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTE 243
           GDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+F +
Sbjct: 181 GDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRD 240

Query: 244 DRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI------------------- 303
           DRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWE+                   
Sbjct: 241 DRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFM 300

Query: 304 -------------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAH 349
                        EVY +GWK WKWRSSNDVF+NGAYFIPTGWGSC PFYTRAQAF VAH
Sbjct: 301 APDDPFSKQVTKREVYESGWKTWKWRSSNDVFMNGAYFIPTGWGSCTPFYTRAQAFPVAH 360

[Close]

BLAST of Lsi01G004490 vs. ExPASy TrEMBL
Match: A0A1S3AZR0 (Pectate lyase OS=Cucumis melo OX=3656 GN=LOC103484628 PE=3 SV=1)

HSP 1 Score: 637.1 bits (1642), Expect = 4.3e-179
Identity = 312/382 (81.68%), Postives = 328/382 (85.86%), Query Frame = 0


Query: 4   MAFPLL----FLFFLPTIISTASLNNYYNKP-ALNPIDACWRSSPNWAANRRALADCAVG 63
           MAFPLL    FL FLPTIIST   NNYY+KP +LNPIDACWR++PNWAANRRALADCAVG
Sbjct: 1   MAFPLLLLSIFLSFLPTIISTPKPNNYYDKPISLNPIDACWRNNPNWAANRRALADCAVG 60

Query: 64  FGSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVN 123
           FGSDA GGKFGSIYVVTDPSDDPE+PEPGTLRFGVIQ +PLWIVFARDM ITL+RELMVN
Sbjct: 61  FGSDALGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQLKPLWIVFARDMAITLKRELMVN 120

Query: 124 SFKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESD 183
           SFKTIDGRGAKVEISNGPC+TIQ+VSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESD
Sbjct: 121 SFKTIDGRGAKVEISNGPCVTIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESD 180

Query: 184 GDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTE 243
           GDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+F +
Sbjct: 181 GDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRD 240

Query: 244 DRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI------------------- 303
           DRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWE+                   
Sbjct: 241 DRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFM 300

Query: 304 -------------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAH 349
                        EVY +GWK WKWRSSNDVF+NGAYFIPTGWGSC PFYTRAQAF VAH
Sbjct: 301 APDDPFSKQVTKREVYESGWKTWKWRSSNDVFMNGAYFIPTGWGSCTPFYTRAQAFPVAH 360

[Close]

BLAST of Lsi01G004490 vs. ExPASy TrEMBL
Match: A0A6J1GF79 (Pectate lyase OS=Cucurbita moschata OX=3662 GN=LOC111453637 PE=3 SV=1)

HSP 1 Score: 601.7 bits (1550), Expect = 2.0e-168
Identity = 294/381 (77.17%), Postives = 317/381 (83.20%), Query Frame = 0


Query: 4   MAFPLLFLFFLPTII----STASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGF 63
           MA PLL LFFL TII     + + +N Y K ALNP+DACWR+ PNWAANRRALADCAVGF
Sbjct: 1   MASPLLSLFFLATIIRLPSPSTAYSNSYTKLALNPVDACWRTKPNWAANRRALADCAVGF 60

Query: 64  GSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNS 123
           GSDA GGKFGSIYVV DPSDDPE+P+PGTLRFGVIQ +PLWIVFARDMVITLERELMVNS
Sbjct: 61  GSDALGGKFGSIYVVIDPSDDPEYPKPGTLRFGVIQEEPLWIVFARDMVITLERELMVNS 120

Query: 124 FKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDG 183
           FKTIDGRGAKVEI NGPCITIQ+VSHVIIHGI+I DCKP KPGRVRS+VTHCGDRQ+SDG
Sbjct: 121 FKTIDGRGAKVEIGNGPCITIQNVSHVIIHGITIRDCKPAKPGRVRSSVTHCGDRQQSDG 180

Query: 184 DAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTED 243
           DAIS+FSSSHIWIDHC LA CTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+FT D
Sbjct: 181 DAISVFSSSHIWIDHCSLASCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTAD 240

Query: 244 RIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI-------------------- 303
           RIMRVTVAFNRFG GLVQRMPRVRFGYAHVANNWY+KWE+                    
Sbjct: 241 RIMRVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYHKWEMYAVGGSADPKIFSQGNYFDA 300

Query: 304 ------------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHG 349
                       EVY NGWKKWKWRSSNDVF+NGAYFIP+GWGSC P YTR QAF VAHG
Sbjct: 301 PDDSSSKQVTKREVYVNGWKKWKWRSSNDVFVNGAYFIPSGWGSCTPIYTRDQAFPVAHG 360

[Close]

BLAST of Lsi01G004490 vs. ExPASy TrEMBL
Match: A0A6J1INN6 (Pectate lyase OS=Cucurbita maxima OX=3661 GN=LOC111478069 PE=3 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 2.6e-168
Identity = 295/381 (77.43%), Postives = 318/381 (83.46%), Query Frame = 0


Query: 4   MAFPLLFLFFLPTII----STASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGF 63
           MA PLL LFFL TII     + + +N Y K ALNPIDACWRS+PNWAANRRALA CAVGF
Sbjct: 1   MASPLLSLFFLATIIRIHSPSTAYSNSYTKLALNPIDACWRSNPNWAANRRALAACAVGF 60

Query: 64  GSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNS 123
           GSDA GGKFGSIYVV DPSDDPE+P+PGTLRFGVIQ +PLWIVFARDMVIT ERELMVNS
Sbjct: 61  GSDALGGKFGSIYVVIDPSDDPEYPKPGTLRFGVIQEEPLWIVFARDMVITPERELMVNS 120

Query: 124 FKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDG 183
           FKTIDGRGAKVEI NGPCITIQ+VSHVIIHGI+I DCKP KPGRVRS+VTHCGDRQ+SDG
Sbjct: 121 FKTIDGRGAKVEIGNGPCITIQNVSHVIIHGITIRDCKPAKPGRVRSSVTHCGDRQQSDG 180

Query: 184 DAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTED 243
           DAIS+FSSSHIWIDHC LA CTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+FT D
Sbjct: 181 DAISVFSSSHIWIDHCSLASCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTAD 240

Query: 244 RIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI-------------------- 303
           RIMRVTVAFNRFG GLVQRMPRVRFGYAHVANNWY+KW++                    
Sbjct: 241 RIMRVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYHKWQMYAVGGSADPKIFSQGNYFDA 300

Query: 304 ------------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHG 349
                       EVY NGWKKWKWRSSNDVF+NGAYFIP+GWGSC PFYTRAQAF VAHG
Sbjct: 301 PDDSSSKQVTKREVYVNGWKKWKWRSSNDVFVNGAYFIPSGWGSCTPFYTRAQAFPVAHG 360

[Close]

BLAST of Lsi01G004490 vs. ExPASy TrEMBL
Match: A0A6J1BVN3 (Pectate lyase OS=Momordica charantia OX=3673 GN=LOC111005923 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 5.1e-148
Identity = 263/378 (69.58%), Postives = 296/378 (78.31%), Query Frame = 0


Query: 5   AFPLLFLFFLPTIISTASLNNYYN--KPALNPIDACWRSSPNWAANRRALADCAVGFGSD 64
           +FP  FL  L  + +  S +  Y+  +  LNPIDACWRS+P+WAA+RRALADCAVGFG D
Sbjct: 3   SFPHHFLLPLFLLAALPSPSRAYSDKRILLNPIDACWRSNPHWAADRRALADCAVGFGKD 62

Query: 65  ATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNSFKT 124
           A GGKFG IYVVTDPSDD E P+PGTLRFG IQ QPLWI+FARDMVI   RELM++SFKT
Sbjct: 63  AMGGKFGVIYVVTDPSDDEENPKPGTLRFGAIQPQPLWIIFARDMVIRPRRELMLSSFKT 122

Query: 125 IDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGDAI 184
           IDGRGA VEI+ G CITIQ+VSHVIIHGISIHDCKPGK G VRS+ TH G+RQ+SDGDAI
Sbjct: 123 IDGRGAHVEIAYGACITIQNVSHVIIHGISIHDCKPGKAGLVRSSATHYGERQQSDGDAI 182

Query: 185 SIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTEDRIM 244
           S+F+SSHIWIDHC LARCTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+FT D+IM
Sbjct: 183 SVFASSHIWIDHCSLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTADKIM 242

Query: 245 RVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI----------------------- 304
           RVTVAFNRFG GLVQRMPRVRFGY HVANNWYNKW++                       
Sbjct: 243 RVTVAFNRFGDGLVQRMPRVRFGYVHVANNWYNKWQMYAVGGSADPTIFSQGNYFMAPDD 302

Query: 305 ---------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLA 349
                    E+   GWKKWKWRSSNDVFLNGAYFIP+GWG+C P YT AQ+F VAHGSL 
Sbjct: 303 SFSKQVTKREIDGFGWKKWKWRSSNDVFLNGAYFIPSGWGTCTPLYTPAQSFPVAHGSLV 362

[Close]

BLAST of Lsi01G004490 vs. NCBI nr
Match: XP_038882226.1 (putative pectate lyase 2 [Benincasa hispida])

HSP 1 Score: 644.4 bits (1661), Expect = 5.5e-181
Identity = 315/378 (83.33%), Postives = 328/378 (86.77%), Query Frame = 0


Query: 4   MAFPLL-FLFFLPTIISTASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGFGSD 63
           +AFPLL  L FLPTI STA+ NNYYNKP LN IDACWRS+PNWAANRRALADCAVGFGSD
Sbjct: 3   LAFPLLCLLIFLPTIFSTANPNNYYNKPPLNLIDACWRSNPNWAANRRALADCAVGFGSD 62

Query: 64  ATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNSFKT 123
           A GGKFGSIYVVTDPSDDPE+PEPGTLRFGVIQ QPLWIVFARDMVITL+RELMVNSFKT
Sbjct: 63  AIGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQPQPLWIVFARDMVITLKRELMVNSFKT 122

Query: 124 IDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGDAI 183
           IDGRGAKVEISNGPCITIQ+VSHVIIHGISIHDCKP KPGRVRSTVTHCGDRQ+SDGDAI
Sbjct: 123 IDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPAKPGRVRSTVTHCGDRQQSDGDAI 182

Query: 184 SIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTEDRIM 243
           SIFSSSHIWIDHC LARCTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+FT+DRIM
Sbjct: 183 SIFSSSHIWIDHCSLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTDDRIM 242

Query: 244 RVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI----------------------- 303
           RVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWE+                       
Sbjct: 243 RVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDD 302

Query: 304 ---------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLA 349
                    EVYA GWK WKWRSSNDVF+NGAYFI TGWGSC PFYTRAQAF VAHGS A
Sbjct: 303 PFSKQVTKREVYAGGWKNWKWRSSNDVFMNGAYFIQTGWGSCTPFYTRAQAFPVAHGSFA 362

[Close]

BLAST of Lsi01G004490 vs. NCBI nr
Match: XP_008440030.1 (PREDICTED: putative pectate lyase 2 [Cucumis melo] >TYK13026.1 putative pectate lyase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 637.1 bits (1642), Expect = 8.8e-179
Identity = 312/382 (81.68%), Postives = 328/382 (85.86%), Query Frame = 0


Query: 4   MAFPLL----FLFFLPTIISTASLNNYYNKP-ALNPIDACWRSSPNWAANRRALADCAVG 63
           MAFPLL    FL FLPTIIST   NNYY+KP +LNPIDACWR++PNWAANRRALADCAVG
Sbjct: 1   MAFPLLLLSIFLSFLPTIISTPKPNNYYDKPISLNPIDACWRNNPNWAANRRALADCAVG 60

Query: 64  FGSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVN 123
           FGSDA GGKFGSIYVVTDPSDDPE+PEPGTLRFGVIQ +PLWIVFARDM ITL+RELMVN
Sbjct: 61  FGSDALGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQLKPLWIVFARDMAITLKRELMVN 120

Query: 124 SFKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESD 183
           SFKTIDGRGAKVEISNGPC+TIQ+VSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESD
Sbjct: 121 SFKTIDGRGAKVEISNGPCVTIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESD 180

Query: 184 GDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTE 243
           GDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+F +
Sbjct: 181 GDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRD 240

Query: 244 DRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI------------------- 303
           DRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWE+                   
Sbjct: 241 DRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFM 300

Query: 304 -------------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAH 349
                        EVY +GWK WKWRSSNDVF+NGAYFIPTGWGSC PFYTRAQAF VAH
Sbjct: 301 APDDPFSKQVTKREVYESGWKTWKWRSSNDVFMNGAYFIPTGWGSCTPFYTRAQAFPVAH 360

[Close]

BLAST of Lsi01G004490 vs. NCBI nr
Match: XP_004134978.2 (putative pectate lyase 2 [Cucumis sativus] >KGN49481.2 hypothetical protein Csa_004106 [Cucumis sativus])

HSP 1 Score: 634.8 bits (1636), Expect = 4.4e-178
Identity = 308/380 (81.05%), Postives = 327/380 (86.05%), Query Frame = 0


Query: 4   MAFPLL---FLFFLPTIISTASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGFG 63
           MA PLL   FLFFLPT+IST   NNYY+KP+LNPIDACWR++ NWAANRRALADCAVGFG
Sbjct: 1   MASPLLLSAFLFFLPTVISTPKPNNYYSKPSLNPIDACWRNNRNWAANRRALADCAVGFG 60

Query: 64  SDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNSF 123
           SDA GGKFGSIYVVTDPSDDPE+PEPGTLRFGVIQ QPLWIVFARDMVITL+RELMVNS+
Sbjct: 61  SDALGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQMQPLWIVFARDMVITLKRELMVNSY 120

Query: 124 KTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGD 183
           KTIDGRGA VEISNGPCITIQ+VSHVIIHGISIHDCKPGKPGRVRS+VTHCGDRQ+SDGD
Sbjct: 121 KTIDGRGANVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSSVTHCGDRQQSDGD 180

Query: 184 AISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTEDR 243
           AISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+F +DR
Sbjct: 181 AISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRDDR 240

Query: 244 IMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI--------------------- 303
           IMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWE+                     
Sbjct: 241 IMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAP 300

Query: 304 -----------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHGS 349
                      EVY +GWK WKWRSSNDVF+NGAYFIPTGWGSC PFYT+AQAF VAHGS
Sbjct: 301 NDPFSKQVTKREVYESGWKSWKWRSSNDVFMNGAYFIPTGWGSCTPFYTQAQAFPVAHGS 360

[Close]

BLAST of Lsi01G004490 vs. NCBI nr
Match: KAG6603791.1 (putative pectate lyase 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 603.6 bits (1555), Expect = 1.1e-168
Identity = 295/381 (77.43%), Postives = 319/381 (83.73%), Query Frame = 0


Query: 4   MAFPLLFLFFLPTII----STASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGF 63
           MA PLL LFFL TII     + + +N Y K ALNPIDACWR++PNWAANRRALADCAVGF
Sbjct: 1   MASPLLSLFFLATIIRLPSPSTAYSNSYTKLALNPIDACWRTNPNWAANRRALADCAVGF 60

Query: 64  GSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNS 123
           GSDA GGKFGSIYVV DPSDDPE+P+PGTLRFGVIQ +PLWIVFARDMVITLERELMVNS
Sbjct: 61  GSDALGGKFGSIYVVIDPSDDPEYPKPGTLRFGVIQAEPLWIVFARDMVITLERELMVNS 120

Query: 124 FKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDG 183
           FKTIDGRGAKVEI NGPCITIQ+VSHVIIHG++I DCKP KPGRVRS+VTHCGDRQ+SDG
Sbjct: 121 FKTIDGRGAKVEIGNGPCITIQNVSHVIIHGLTIRDCKPAKPGRVRSSVTHCGDRQQSDG 180

Query: 184 DAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTED 243
           DAIS+FSSSHIWIDHC LA CTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+FT D
Sbjct: 181 DAISVFSSSHIWIDHCSLASCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTAD 240

Query: 244 RIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI-------------------- 303
           RIMRVTVAFNRFG GLVQRMPRVRFGYAHVANNWY+KWE+                    
Sbjct: 241 RIMRVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYHKWEMYAVGGSADPKIFSQGNYFDA 300

Query: 304 ------------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHG 349
                       EVYANGWKKWKWRSSNDVF+NGAYFIP+GWGSC P YTR QAF VAHG
Sbjct: 301 PDDSSSKQVTKREVYANGWKKWKWRSSNDVFVNGAYFIPSGWGSCTPIYTRDQAFPVAHG 360

[Close]

BLAST of Lsi01G004490 vs. NCBI nr
Match: KAG7033961.1 (putative pectate lyase 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 602.8 bits (1553), Expect = 1.8e-168
Identity = 295/381 (77.43%), Postives = 318/381 (83.46%), Query Frame = 0


Query: 4   MAFPLLFLFFLPTII----STASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGF 63
           MA PLL LFFL TII     + + +N Y K ALNPIDACWR++PNWAANRRALADCAVGF
Sbjct: 1   MASPLLSLFFLATIIRLPSPSTAYSNSYTKLALNPIDACWRTNPNWAANRRALADCAVGF 60

Query: 64  GSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNS 123
           GSDA GGKFGSIYVV DPSDDPE+P+PGTLRFGVIQ +PLWIVFARDMVITLERELMVNS
Sbjct: 61  GSDALGGKFGSIYVVIDPSDDPEYPKPGTLRFGVIQAEPLWIVFARDMVITLERELMVNS 120

Query: 124 FKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDG 183
           FKTIDGRGAKVEI NGPCITIQ+VSHVIIHGI+I DCKP KPGRVRS+VTHCGDRQ+SDG
Sbjct: 121 FKTIDGRGAKVEIGNGPCITIQNVSHVIIHGITIRDCKPAKPGRVRSSVTHCGDRQQSDG 180

Query: 184 DAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTED 243
           DAIS+FSSSHIWIDHC LA CTDGLIDVIHASTAVTISNNYF+QH+KVILLGHND+FT D
Sbjct: 181 DAISVFSSSHIWIDHCSLASCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTAD 240

Query: 244 RIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI-------------------- 303
           RIMRVTVAFNRFG GLVQRMPRVRFGYAHVANNWY+KWE+                    
Sbjct: 241 RIMRVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYHKWEMYAVGGSADPKIFSQGNYFDA 300

Query: 304 ------------EVYANGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHG 349
                       EVY NGWKKWKWRSSNDVF+NGAYFIP+GWGSC P YTR QAF VAHG
Sbjct: 301 PDDSSSKQVTKREVYVNGWKKWKWRSSNDVFVNGAYFIPSGWGSCTPIYTRDQAFPVAHG 360

[Close]

BLAST of Lsi01G004490 vs. TAIR 10
Match: AT1G11920.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 489.6 bits (1259), Expect = 2.1e-138
Identity = 238/374 (63.64%), Postives = 282/374 (75.40%), Query Frame = 0


Query: 8   LLFLFFLPTIISTASLNNYYNKPAL-NPIDACWRSSPNWAANRRALADCAVGFGSDATGG 67
           LLF  F  +++  A  N Y     L NPID+CWR +P WA+NRRALADCAVGFG  A GG
Sbjct: 11  LLFAAFSSSVVEAAYSNGYTIPKLLPNPIDSCWRRNPYWASNRRALADCAVGFGKSAVGG 70

Query: 68  KFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNSFKTIDGR 127
           K+GSIYVVT+PSDDPE P PGTLR+ VIQ++PLWI FARDMVI L  EL++NS+KTIDGR
Sbjct: 71  KYGSIYVVTNPSDDPENPRPGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGR 130

Query: 128 GAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGDAISIFS 187
           GAKVEI+ GPCITIQ VSHVIIHGISIHDCKPGK GRVRS+ TH G R+ SDGDAI+IF 
Sbjct: 131 GAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIFD 190

Query: 188 SSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTEDRIMRVTV 247
           SSHIWIDHC+ +RC DGLIDV+HASTAVTISNNYFTQH+KV+LLGHND+  ED+IMRVT+
Sbjct: 191 SSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTI 250

Query: 248 AFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEI---------EVYANG------------ 307
           AFN FG GL++RMPRVR GYAHVANN Y KW++          +++ G            
Sbjct: 251 AFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSEGNYFVASDDPSKK 310

Query: 308 -----------WKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLAPLLT 349
                      WK+WKWR+S DVF NGAYF+P+G+G+  P Y RA+ F V+HGSL PLLT
Sbjct: 311 QVTKRIDSGYDWKRWKWRTSKDVFKNGAYFVPSGYGTVTPLYGRAERFPVSHGSLVPLLT 370

[Close]

BLAST of Lsi01G004490 vs. TAIR 10
Match: AT4G22080.1 (root hair specific 14 )

HSP 1 Score: 453.4 bits (1165), Expect = 1.7e-127
Identity = 229/385 (59.48%), Postives = 271/385 (70.39%), Query Frame = 0


Query: 8   LLFLFFLPTIISTASLNNYY-----------NKP--ALNPIDACWRSSPNWAANRRALAD 67
           LL + FL   +  A  N YY            KP   +NP+D+CWR   +WAANR+ LAD
Sbjct: 9   LLVVLFLCHSLVHAENNGYYGYTPTVANYLPEKPQNIMNPVDSCWRLKSDWAANRKDLAD 68

Query: 68  CAVGFGSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERE 127
           C VGFGS   GGK G++YVVT+P D+ + P+PG+LR+GVIQ +PLWI FA+DMVITLE E
Sbjct: 69  CVVGFGSSTLGGKKGNLYVVTNPYDNAQNPQPGSLRYGVIQAKPLWITFAKDMVITLENE 128

Query: 128 LMVNSFKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDR 187
           LMVNS+KTIDGRGAKVEI+ GPCITIQDV++VI+HGISIHDCKPGK G VRS+ TH G R
Sbjct: 129 LMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKYGMVRSSPTHVGHR 188

Query: 188 QESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHND 247
           + SDGDAI+IF SS+IWIDHCYLA CTDGLIDVIHAST +TISNNYFTQH+KV+LLGHND
Sbjct: 189 KGSDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDKVMLLGHND 248

Query: 248 DFTEDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEIEVYA----------- 307
           DF +D  M+VTVAFN FG GLV+RMPRVR GYAHVANN Y+KW +               
Sbjct: 249 DFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEG 308

Query: 308 --------------------NGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFA 349
                                GW  W+WR+S DVF NGAYF+P+G+GS +  Y+ AQ F 
Sbjct: 309 NYFIASDKSNSKEVTKREVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSISLPYSSAQRFT 368

[Close]

BLAST of Lsi01G004490 vs. TAIR 10
Match: AT4G22090.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 449.5 bits (1155), Expect = 2.4e-126
Identity = 227/385 (58.96%), Postives = 269/385 (69.87%), Query Frame = 0


Query: 8   LLFLFFLPTIISTASLNNYYN-KPA------------LNPIDACWRSSPNWAANRRALAD 67
           LL   FL   +  A+ N YY   PA            +NP+D+CWR   +W  NR  LAD
Sbjct: 9   LLVALFLCQSLVHAAYNGYYGYSPAAAPYPAEEPQNIMNPVDSCWRLKSDWDVNREDLAD 68

Query: 68  CAVGFGSDATGGKFGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERE 127
           CAVGFGS   GGK G+IYVVT+P D+ + P PG+LR+GVIQ +PLWI FA+DMVITL  E
Sbjct: 69  CAVGFGSSTLGGKKGNIYVVTNPYDNAQNPHPGSLRYGVIQAKPLWITFAKDMVITLANE 128

Query: 128 LMVNSFKTIDGRGAKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDR 187
           LMVNS+KTIDGRGAKVEI+ GPCITIQDV++VI+HGISIHDCKPGK G+VRS+ TH G R
Sbjct: 129 LMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKSGKVRSSPTHVGHR 188

Query: 188 QESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHND 247
           + SDGDAI+IF SS++WIDHCYLA CTDGLIDVIHASTA+TISNNYFTQH+KV+LLGHND
Sbjct: 189 KGSDGDAITIFGSSNVWIDHCYLASCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHND 248

Query: 248 DFTEDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEIEVYA----------- 307
           +F +D  M+VTVAFN FG GLV+RMPRVR GYAHVANN Y+KW +               
Sbjct: 249 NFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEG 308

Query: 308 --------------------NGWKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFA 349
                                GW  W+WR+SNDVF NGA+F+P+G+GS    Y+ AQ F 
Sbjct: 309 NYFIASDKSYSKEVTKREVKGGWNNWRWRTSNDVFKNGAFFVPSGYGSIPLPYSSAQRFT 368

[Close]

BLAST of Lsi01G004490 vs. TAIR 10
Match: AT1G30350.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 396.4 bits (1017), Expect = 2.4e-110
Identity = 203/373 (54.42%), Postives = 249/373 (66.76%), Query Frame = 0


Query: 8   LLFLFFLPTIISTASLNNYYNKPALNPIDACWRSSPNWAANRRALADCAVGFGSDATGGK 67
           LL  F  P + +  S N    + +LNPIDACWR +P WA NR+ALA CAVG+G  A GGK
Sbjct: 11  LLAAFASPLLETAHSYNVTAPRVSLNPIDACWRRNPKWATNRQALAHCAVGYGKAAIGGK 70

Query: 68  FGSIYVVTDPSDDPEFPEPGTLRFGVIQTQPLWIVFARDMVITLERELMVNSFKTIDGRG 127
            G IYVVT+PSD+P  P PGTLR+ V Q +PLWI FARDMVI L+ +LM+NS+KTIDGRG
Sbjct: 71  NGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRG 130

Query: 128 AKVEISNGPCITIQDVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRQESDGDAISIFSS 187
           AKVEI+NGPC+ I+ V HVIIHGISIHDCK               D    DGD I +F S
Sbjct: 131 AKVEIANGPCLRIRQVKHVIIHGISIHDCK--------------ADPNGMDGDGIRVFQS 190

Query: 188 SHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFTQHNKVILLGHNDDFTEDRIMRVTVA 247
           +H+WIDHC+L+RC DGLIDVI +STAVTISNNYFTQH+KV+LLGH+D +  D+ MRVT+A
Sbjct: 191 THVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDMRVTIA 250

Query: 248 FNRFGAGLVQRMPRVRFGYAHVANNWYNKWEIE---------VYANG------------- 307
           FN FG GL++RMPRVR GYAHVANN Y KW++          +++ G             
Sbjct: 251 FNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEKRSSKQ 310

Query: 308 ----------WKKWKWRSSNDVFLNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLAPLLTA 349
                      K+WKW +S DVF+NGA+F P G     P Y   + F VAHGSL P LT+
Sbjct: 311 VTKRMMAGPDSKRWKWGTSRDVFMNGAFFGPPG-VIVRPLYKGGEGFRVAHGSLVPSLTS 368

[Close]

BLAST of Lsi01G004490 vs. TAIR 10
Match: AT4G13710.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 377.9 bits (969), Expect = 9.0e-105
Identity = 185/350 (52.86%), Postives = 234/350 (66.86%), Query Frame = 0


Query: 33  NPIDACWRSSPNWAANRRALADCAVGFGSDATGGKFGSIYVVTDPSD-DPEFPEPGTLRF 92
           NPID CWR   NW  NR+ LADC +GFG +A GG+ G  Y+VTDP+D D   P+PGTLR 
Sbjct: 122 NPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRH 181

Query: 93  GVIQTQPLWIVFARDMVITLERELMVNSFKTIDGRGAKVEISNGPCITIQDVSHVIIHGI 152
            VIQ +PLWIVF RDMVI L++EL++NSFKTID RG+ V I+NG CITIQ +++VIIHG+
Sbjct: 182 AVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGL 241

Query: 153 SIHDCKPGKPGRVRSTVTHCGDRQESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHAS 212
            IHDCKP     VRS+ +H G R  +DGDA+SIF SSHIWIDH  L+ C DGL+D +  S
Sbjct: 242 HIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGS 301

Query: 213 TAVTISNNYFTQHNKVILLGHNDDFTEDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVAN 272
           TA+T+SNN+FT HN+V+LLGH+D +T+D++M+VT+A+N FG GLVQRMPR R GY HV N
Sbjct: 302 TAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVN 361

Query: 273 NWYNKWE---------------------------------IEVYANGWKKWKWRSSNDVF 332
           N Y  WE                                 +E  A+ WKKW WRS  D+ 
Sbjct: 362 NDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLL 421

Query: 333 LNGAYFIPTGWGSCAPFYTRAQAFAVAHGSLAPLLTATAGTLTCVLGKPC 349
           LNGA+F P+G G+ A  Y RA + A    S+   +T+TAG L C  G+PC
Sbjct: 422 LNGAFFRPSGAGASAS-YGRASSLAAKPSSMVDTITSTAGALGCRKGRPC 470

The following BLAST results are available for this feature:

BLAST of Lsi01G004490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65388	3.0e-137	63.64	Putative pectate lyase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g11920 PE=3 SV=2	[more]
O65456	2.4e-126	59.48	Probable pectate lyase 16 OS=Arabidopsis thaliana OX=3702 GN=At4g22080 PE=2 SV=1	[more]
O65457	3.4e-125	58.96	Putative pectate lyase 17 OS=Arabidopsis thaliana OX=3702 GN=At4g22090 PE=3 SV=1	[more]
Q9C8G4	3.4e-109	54.42	Probable pectate lyase 4 OS=Arabidopsis thaliana OX=3702 GN=At1g30350 PE=2 SV=1	[more]
Q944R1	1.3e-103	52.86	Probable pectate lyase 15 OS=Arabidopsis thaliana OX=3702 GN=At4g13710 PE=2 SV=1	[more]

BLAST of Lsi01G004490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRJ6	4.3e-179	81.68	Pectate lyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006270...	[more]
A0A1S3AZR0	4.3e-179	81.68	Pectate lyase OS=Cucumis melo OX=3656 GN=LOC103484628 PE=3 SV=1	[more]
A0A6J1GF79	2.0e-168	77.17	Pectate lyase OS=Cucurbita moschata OX=3662 GN=LOC111453637 PE=3 SV=1	[more]
A0A6J1INN6	2.6e-168	77.43	Pectate lyase OS=Cucurbita maxima OX=3661 GN=LOC111478069 PE=3 SV=1	[more]
A0A6J1BVN3	5.1e-148	69.58	Pectate lyase OS=Momordica charantia OX=3673 GN=LOC111005923 PE=3 SV=1	[more]

BLAST of Lsi01G004490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882226.1	5.5e-181	83.33	putative pectate lyase 2 [Benincasa hispida]	[more]
XP_008440030.1	8.8e-179	81.68	PREDICTED: putative pectate lyase 2 [Cucumis melo] >TYK13026.1 putative pectate ...	[more]
XP_004134978.2	4.4e-178	81.05	putative pectate lyase 2 [Cucumis sativus] >KGN49481.2 hypothetical protein Csa_...	[more]
KAG6603791.1	1.1e-168	77.43	putative pectate lyase 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7033961.1	1.8e-168	77.43	putative pectate lyase 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi01G004490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11920.1	2.1e-138	63.64	Pectin lyase-like superfamily protein	[more]
AT4G22080.1	1.7e-127	59.48	root hair specific 14	[more]
AT4G22090.1	2.4e-126	58.96	Pectin lyase-like superfamily protein	[more]
AT1G30350.1	2.4e-110	54.42	Pectin lyase-like superfamily protein	[more]
AT4G13710.1	9.0e-105	52.86	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018082	AmbAllergen	PRINTS	PR00807	AMBALLERGEN	coord: 114..130 score: 75.07 coord: 78..103 score: 59.34 coord: 55..72 score: 61.64 coord: 178..199 score: 62.77 coord: 258..277 score: 64.76
IPR002022	Pectate lyase	SMART	SM00656	amb_all	coord: 106..304 e-value: 3.9E-71 score: 252.3
IPR002022	Pectate lyase	PFAM	PF00544	Pectate_lyase_4	coord: 115..276 e-value: 2.4E-22 score: 79.5
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 32..341 e-value: 4.7E-100 score: 336.9
IPR045032	Pectin lyase family	PANTHER	PTHR31683	PECTATE LYASE 18-RELATED	coord: 283..347 coord: 23..279
None	No IPR available	PANTHER	PTHR31683:SF157	PECTATE LYASE	coord: 283..347 coord: 23..279
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 33..339

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004490.1	Lsi01G004490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045490	pectin catabolic process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0030570	pectate lyase activity