Lsi01G004480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G004480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	GUB_WAK_bind domain-containing protein
Location	chr01: 3747005 .. 3749059 (+)
RNA-Seq Expression	Lsi01G004480
Synteny	Lsi01G004480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTATTCTCGAATTCCCTCTCCCCTAGTGTTCTTCTAATTTTGTCACAAATCCTAACATCATTCATCTGTGTGAAATCAACATGCCGAACCTCCTGCGGCAACATTCCGATCCATTACCCCTTCGGCATAGACGACGGTTGCGGCAGCCTTTACTACCGGAACCTCCTTTTCTGCACAAATTCCGACAAATTAGAGCTCCGAACACCCACCGGAACATACCCTGTTTCCGCCATTAGCTACTCCGATCCCTACATCCTAATCTCCGACCCAGACATGTGGACCTGCCAAGACGGCTCAAACTTCCGCCCGACCCGACCCTTCATCCTCGACCCGGAAACCCACCTCTCTGTTTCCTCTCTAAACGACTACCTCTTCTTCAACTGCAGCGAAGACGACGTAATGATCGCGCCTAAGCCGGTGTTCTGCGGGCGGTTCCCGGACCGGTGCGACGCGTCGTGTGACAGTGCGAGTTATTTGTGCACGCACGTGCCGGAGTGCGCGACGGCGTTGGGGGCGAGTTCCTGCTGCTCGTATCATCCGAAAGCCATGGATTCTTTGAAGCTGATGCTTAAGTACTGTGCTAGCTACACTAGTGTGTATTGGAGAAGCGTTGAAGATGGGGATAATAATGATCAAGTTGCTGAATATGGGATTCGGATTGATTTTGATTTTCTTGTTACAACTAGTTGTCTTCGTTGCCAAGATGTTTTGAAAGGCGGTGGGTCGTGTGGATTTCATGTTGAAACGCTACAGTTCTTGTGCATTTGTGATGATAATAATAATGTCACTACTTATTGTCAAGGTATTCTTCAATCCTTTTGCTTTCCTTTCATAAACCCAGTTTGATAAATATTTTATTTTTGGAAACTATGTTTACTTTCTTGCGGTTTCTTTTCCATTTTCATCCTTCCAAACTAAACACTTAATTCTTAACAAAATTCAAAAAATAAAAGCAAGTTTTTTATAGAGTAATACTTAGGGCATGCTACACTCATCCCCATACATTCATTTCAATCATAGAAGAAAAAGTATTGAAAAATATATTTATAATAAAAAACATTTGTGACGTGACAACTTGTGATTGGACACTTGAGTAAACTATACAAAAATAAGTGCAAAATGCACCTAAATATTTTTTTTTGGTTTTTAAAATTTATTTTTCTTAATTTTCAAAAGAGATATTTTCAAGTATAGTAGAATGAACTAACTTATTTACAAATATAGCAAAATGCCACTAATCGATAGACAATGACATTTTGTTACATTTGAAAATATTTTCAACACTTTTACGATTTAAAACAATTATCCTTTTCAATAATCAATACAACCTATGAAATGTTTGTAATAGGAGGCTGAAGACTTATAAGTTTCTATTCATTAATTGAAATCATATACAACCTTTAGACTTCATCTATGGAAACTTTTAAAATTGAGGATTAAATAAATACAAACGACGAGTTTGCATTTGGTTGTTGATTCGAAAATATAAGAGATTGAGTTAAATTTCATATCTTTCACTGTTTTTGTGTACGTATTTGAAAGCAAAAAAATATAAATTAAAATGTTGACTTTAATCCTATTTCTTGACAGAAAATGATTGGATTTCATTACTTAATTAACATTACTGGCTTTTGACATGCAGATCGAAGCATGTCGAGTGTCAGCAATAAGCACCGAATAATTGCAGGTAAATTTATATTGAGGTCCTTAAACTTGTTCTTAAAATTGGACTAATTCTAAATTTAATTTTCAGGGACAGTAAGTGCAGTATCAGCAGCTGGGGCATTGGGAATTGCAATAACTATCTTGTTGTTGAAGAAACTTAAGAAGGCCAAAGCACCCGTCACATGTGGTGTTCAAACCAACGAGAATAGGCTTTTTTGATGACGGTCATATTCAAACAAACAGACAGACACTTCTTCCCTTTCACTTTCCTCTTTAATTTCTCTTTGCTTTCTTCTTTCTTTAGTATTCAATAGAATCTTCTTTATTTCTCTTTTTGGGAAACATTTTATATACTTCAGCTCAGATCCACCATTTTTGCTACTC

mRNA sequence

ATGGCATTATTCTCGAATTCCCTCTCCCCTAGTGTTCTTCTAATTTTGTCACAAATCCTAACATCATTCATCTGTGTGAAATCAACATGCCGAACCTCCTGCGGCAACATTCCGATCCATTACCCCTTCGGCATAGACGACGGTTGCGGCAGCCTTTACTACCGGAACCTCCTTTTCTGCACAAATTCCGACAAATTAGAGCTCCGAACACCCACCGGAACATACCCTGTTTCCGCCATTAGCTACTCCGATCCCTACATCCTAATCTCCGACCCAGACATGTGGACCTGCCAAGACGGCTCAAACTTCCGCCCGACCCGACCCTTCATCCTCGACCCGGAAACCCACCTCTCTGTTTCCTCTCTAAACGACTACCTCTTCTTCAACTGCAGCGAAGACGACGTAATGATCGCGCCTAAGCCGGTGTTCTGCGGGCGGTTCCCGGACCGGTGCGACGCGTCGTGTGACAGTGCGAGTTATTTGTGCACGCACGTGCCGGAGTGCGCGACGGCGTTGGGGGCGAGTTCCTGCTGCTCGTATCATCCGAAAGCCATGGATTCTTTGAAGCTGATGCTTAAGTACTGTGCTAGCTACACTAGTGTGTATTGGAGAAGCGTTGAAGATGGGGATAATAATGATCAAGTTGCTGAATATGGGATTCGGATTGATTTTGATTTTCTTGTTACAACTAGTTGTCTTCGTTGCCAAGATGTTTTGAAAGGCGATCGAAGCATGTCGAGTGTCAGCAATAAGCACCGAATAATTGCAGGGACAGTAAGTGCAGTATCAGCAGCTGGGGCATTGGGAATTGCAATAACTATCTTGTTGTTGAAGAAACTTAAGAAGGCCAAAGCACCCGTCACATGTGGTGTTCAAACCAACGAGAATAGGCTTTTTTGATGACGGTCATATTCAAACAAACAGACAGACACTTCTTCCCTTTCACTTTCCTCTTTAATTTCTCTTTGCTTTCTTCTTTCTTTAGTATTCAATAGAATCTTCTTTATTTCTCTTTTTGGGAAACATTTTATATACTTCAGCTCAGATCCACCATTTTTGCTACTC

Coding sequence (CDS)

ATGGCATTATTCTCGAATTCCCTCTCCCCTAGTGTTCTTCTAATTTTGTCACAAATCCTAACATCATTCATCTGTGTGAAATCAACATGCCGAACCTCCTGCGGCAACATTCCGATCCATTACCCCTTCGGCATAGACGACGGTTGCGGCAGCCTTTACTACCGGAACCTCCTTTTCTGCACAAATTCCGACAAATTAGAGCTCCGAACACCCACCGGAACATACCCTGTTTCCGCCATTAGCTACTCCGATCCCTACATCCTAATCTCCGACCCAGACATGTGGACCTGCCAAGACGGCTCAAACTTCCGCCCGACCCGACCCTTCATCCTCGACCCGGAAACCCACCTCTCTGTTTCCTCTCTAAACGACTACCTCTTCTTCAACTGCAGCGAAGACGACGTAATGATCGCGCCTAAGCCGGTGTTCTGCGGGCGGTTCCCGGACCGGTGCGACGCGTCGTGTGACAGTGCGAGTTATTTGTGCACGCACGTGCCGGAGTGCGCGACGGCGTTGGGGGCGAGTTCCTGCTGCTCGTATCATCCGAAAGCCATGGATTCTTTGAAGCTGATGCTTAAGTACTGTGCTAGCTACACTAGTGTGTATTGGAGAAGCGTTGAAGATGGGGATAATAATGATCAAGTTGCTGAATATGGGATTCGGATTGATTTTGATTTTCTTGTTACAACTAGTTGTCTTCGTTGCCAAGATGTTTTGAAAGGCGATCGAAGCATGTCGAGTGTCAGCAATAAGCACCGAATAATTGCAGGGACAGTAAGTGCAGTATCAGCAGCTGGGGCATTGGGAATTGCAATAACTATCTTGTTGTTGAAGAAACTTAAGAAGGCCAAAGCACCCGTCACATGTGGTGTTCAAACCAACGAGAATAGGCTTTTTTGA

Protein sequence

MALFSNSLSPSVLLILSQILTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLFCTNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSVSSLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCSYHPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVLKGDRSMSSVSNKHRIIAGTVSAVSAAGALGIAITILLLKKLKKAKAPVTCGVQTNENRLF

Homology

[Close]

BLAST of Lsi01G004480 vs. ExPASy TrEMBL
Match: A0A0A0KHS5 (GUB_WAK_bind domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G513520 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.4e-146
Identity = 262/328 (79.88%), Postives = 280/328 (85.37%), Query Frame = 0


Query: 1   MALFSNSLSPSVLLILSQI-LTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLF 60
           M L SNSLSP VLLI+SQI LTSF+CVK+TCRTSCGNIPIHYPFGIDDGCGSLYYRNLL+
Sbjct: 4   MPLVSNSLSP-VLLIMSQIFLTSFLCVKATCRTSCGNIPIHYPFGIDDGCGSLYYRNLLY 63

Query: 61  CTNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSV 120
           CTNSDKLELRT T TYPVSAISYSDPYILISDPDMWTCQDG NFRPTRPF+LDPETHLSV
Sbjct: 64  CTNSDKLELRTTTRTYPVSAISYSDPYILISDPDMWTCQDGQNFRPTRPFVLDPETHLSV 123

Query: 121 SSLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCS 180
           S LND+LFFNCSE +VMIAPKPVFCGRFPDRCDASCDSASYLCTH+P C TALG SSCCS
Sbjct: 124 SPLNDFLFFNCSEQNVMIAPKPVFCGRFPDRCDASCDSASYLCTHLPGCETALGESSCCS 183

Query: 181 YHPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVL 240
           Y PKAMDSL++M+KYC SYTSVYWRSV DGDN DQ+AEYGIRIDFDFLVTT+CL CQDVL
Sbjct: 184 YSPKAMDSLRMMVKYCGSYTSVYWRSVGDGDNKDQIAEYGIRIDFDFLVTTTCLGCQDVL 243

Query: 241 KG----------------------------DRSMSSVSNKHRIIAGTVSAVSAAGALGIA 300
           KG                            D+S+SSVS+KHRIIAGTVSAVSAAGALGIA
Sbjct: 244 KGGGSCGFDVETLQFLCICGDNNNVTTYCQDQSISSVSHKHRIIAGTVSAVSAAGALGIA 303

[Close]

BLAST of Lsi01G004480 vs. ExPASy TrEMBL
Match: A0A5D3CM55 (GUB_WAK_bind domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006280 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.7e-145
Identity = 261/328 (79.57%), Postives = 277/328 (84.45%), Query Frame = 0


Query: 1   MALFSNSLSPSVLLILSQI-LTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLF 60
           M L SN LSP V LILSQI LTSF+CV++TCRTSCG+IPIHYPFGIDDGCGSLYYRNLL+
Sbjct: 1   MQLVSNPLSP-VRLILSQIFLTSFLCVEATCRTSCGSIPIHYPFGIDDGCGSLYYRNLLY 60

Query: 61  CTNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSV 120
           CTNSDKLELRTPTGTYPVS ISYSDPYILISDPDMW CQDG NFRPTRPFILDPETHLSV
Sbjct: 61  CTNSDKLELRTPTGTYPVSTISYSDPYILISDPDMWACQDGQNFRPTRPFILDPETHLSV 120

Query: 121 SSLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCS 180
           S LND+LFFNCSE +VMIAPKPVFCGRFPDRCDASCDSASYLCTH+P C TALG SSCCS
Sbjct: 121 SPLNDFLFFNCSEQNVMIAPKPVFCGRFPDRCDASCDSASYLCTHLPGCETALGESSCCS 180

Query: 181 YHPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVL 240
           Y PKA+DSLK+M+KYC SYTSVYWRSV DGDN DQ+AEYGIRIDFDFLVTT+CL CQDVL
Sbjct: 181 YSPKAVDSLKMMVKYCGSYTSVYWRSVGDGDNKDQIAEYGIRIDFDFLVTTTCLGCQDVL 240

Query: 241 KG----------------------------DRSMSSVSNKHRIIAGTVSAVSAAGALGIA 300
           KG                            D+S SSVSNKHRIIAGTVSAVSAAGALGIA
Sbjct: 241 KGGGSCGFDVETLQFLCICDGNNNVTTYCQDQSKSSVSNKHRIIAGTVSAVSAAGALGIA 300

[Close]

BLAST of Lsi01G004480 vs. ExPASy TrEMBL
Match: A0A1S3B0S2 (uncharacterized protein LOC103484627 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484627 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.7e-145
Identity = 261/328 (79.57%), Postives = 277/328 (84.45%), Query Frame = 0


Query: 1   MALFSNSLSPSVLLILSQI-LTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLF 60
           M L SN LSP V LILSQI LTSF+CV++TCRTSCG+IPIHYPFGIDDGCGSLYYRNLL+
Sbjct: 1   MQLVSNPLSP-VRLILSQIFLTSFLCVEATCRTSCGSIPIHYPFGIDDGCGSLYYRNLLY 60

Query: 61  CTNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSV 120
           CTNSDKLELRTPTGTYPVS ISYSDPYILISDPDMW CQDG NFRPTRPFILDPETHLSV
Sbjct: 61  CTNSDKLELRTPTGTYPVSTISYSDPYILISDPDMWACQDGQNFRPTRPFILDPETHLSV 120

Query: 121 SSLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCS 180
           S LND+LFFNCSE +VMIAPKPVFCGRFPDRCDASCDSASYLCTH+P C TALG SSCCS
Sbjct: 121 SPLNDFLFFNCSEQNVMIAPKPVFCGRFPDRCDASCDSASYLCTHLPGCETALGESSCCS 180

Query: 181 YHPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVL 240
           Y PKA+DSLK+M+KYC SYTSVYWRSV DGDN DQ+AEYGIRIDFDFLVTT+CL CQDVL
Sbjct: 181 YSPKAVDSLKMMVKYCGSYTSVYWRSVGDGDNKDQIAEYGIRIDFDFLVTTTCLGCQDVL 240

Query: 241 KG----------------------------DRSMSSVSNKHRIIAGTVSAVSAAGALGIA 300
           KG                            D+S SSVSNKHRIIAGTVSAVSAAGALGIA
Sbjct: 241 KGGGSCGFDVETLQFLCICDGNNNVTTYCQDQSKSSVSNKHRIIAGTVSAVSAAGALGIA 300

[Close]

BLAST of Lsi01G004480 vs. ExPASy TrEMBL
Match: A0A1S3B0W4 (uncharacterized protein LOC103484627 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484627 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 2.2e-139
Identity = 250/313 (79.87%), Postives = 266/313 (84.98%), Query Frame = 0


Query: 1   MALFSNSLSPSVLLILSQI-LTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLF 60
           M L SN LSP V LILSQI LTSF+CV++TCRTSCG+IPIHYPFGIDDGCGSLYYRNLL+
Sbjct: 1   MQLVSNPLSP-VRLILSQIFLTSFLCVEATCRTSCGSIPIHYPFGIDDGCGSLYYRNLLY 60

Query: 61  CTNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSV 120
           CTNSDKLELRTPTGTYPVS ISYSDPYILISDPDMW CQDG NFRPTRPFILDPETHLSV
Sbjct: 61  CTNSDKLELRTPTGTYPVSTISYSDPYILISDPDMWACQDGQNFRPTRPFILDPETHLSV 120

Query: 121 SSLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCS 180
           S LND+LFFNCSE +VMIAPKPVFCGRFPDRCDASCDSASYLCTH+P C TALG SSCCS
Sbjct: 121 SPLNDFLFFNCSEQNVMIAPKPVFCGRFPDRCDASCDSASYLCTHLPGCETALGESSCCS 180

Query: 181 YHPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVL 240
           Y PKA+DSLK+M+KYC SYTSVYWRSV DGDN DQ+AEYGIRIDFDFLVTT+CL CQDVL
Sbjct: 181 YSPKAVDSLKMMVKYCGSYTSVYWRSVGDGDNKDQIAEYGIRIDFDFLVTTTCLGCQDVL 240

Query: 241 KGDRS-------------MSSVSNKHRIIAGTVSAVSAAGALGIAITILLLKKLKKAKAP 300
           KG  S                 +N      GTVSAVSAAGALGIA TIL +KKLKKA AP
Sbjct: 241 KGGGSCGFDVETLQFLCICDGNNNVTTYCQGTVSAVSAAGALGIAATILFVKKLKKANAP 300

[Close]

BLAST of Lsi01G004480 vs. ExPASy TrEMBL
Match: A0A6J1KT12 (uncharacterized protein LOC111496970 OS=Cucurbita maxima OX=3661 GN=LOC111496970 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 9.5e-135
Identity = 244/318 (76.73%), Postives = 266/318 (83.65%), Query Frame = 0


Query: 12  VLLILSQILTSFICVKST--CRTSCGNIPIHYPFGIDDGCGSLYYRNLLFCTNSDKLELR 71
           +LL+++QILT F+ +K+   CRTSCGNI IHYPFGIDDGCGSLYYRNLLFCT SD+L LR
Sbjct: 31  LLLLIAQILTPFLSLKAAQFCRTSCGNISIHYPFGIDDGCGSLYYRNLLFCTTSDQLHLR 90

Query: 72  TPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSVSSLNDYLFFN 131
           TP+GT+PVSAISYSDPYILIS+PDMWTCQDG NFRPTRPF LDPETHL+VS LNDYLFFN
Sbjct: 91  TPSGTFPVSAISYSDPYILISNPDMWTCQDGPNFRPTRPFTLDPETHLTVSPLNDYLFFN 150

Query: 132 CSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCSYHPKAMDSLK 191
           CSE+DVMIAPKPVFCGRFPDRCDASCDSASYLCTHVP+CATAL  SSCCSYHPKAMDSLK
Sbjct: 151 CSEEDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPQCATALEGSSCCSYHPKAMDSLK 210

Query: 192 LMLKYCASYTSVYWRSVED-GDNNDQVAEYGIRIDFDFLVTTSCLRCQDVLKG------- 251
           LMLKYCA+YTSVYWRS+    +  DQVAEYGIRIDFD +VTTSCLRCQDVLKG       
Sbjct: 211 LMLKYCATYTSVYWRSIGGVNEAYDQVAEYGIRIDFDIVVTTSCLRCQDVLKGGGSCGFD 270

Query: 252 --------------------DRSMSSVSNKHRIIAGTVSAVSAAGALGIAITILLLKKLK 300
                               D SM+S S+KHR+IAGTVSAVSAAGALG+A  ILLLKKL 
Sbjct: 271 VQSLGFLCICDDKNVTTYCEDPSMASGSHKHRVIAGTVSAVSAAGALGVAAAILLLKKL- 330

[Close]

BLAST of Lsi01G004480 vs. NCBI nr
Match: XP_038883332.1 (uncharacterized protein LOC120074316 isoform X1 [Benincasa hispida])

HSP 1 Score: 576.6 bits (1485), Expect = 1.2e-160
Identity = 284/327 (86.85%), Postives = 291/327 (88.99%), Query Frame = 0


Query: 1   MALFSNSLSPSVLLILSQILTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLFC 60
           MALFSNSLS  VLLI+ Q+LTSF+CVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLFC
Sbjct: 1   MALFSNSLSHGVLLIILQLLTSFLCVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLFC 60

Query: 61  TNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSVS 120
           T+SDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDG NFRP RPFILDPETHLSVS
Sbjct: 61  TDSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGQNFRPIRPFILDPETHLSVS 120

Query: 121 SLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCSY 180
           SLNDYLFFNCSE+DVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALG SSCCSY
Sbjct: 121 SLNDYLFFNCSEEDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGGSSCCSY 180

Query: 181 HPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVLK 240
           HPKAMDSLK+MLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTT+CLRCQDVLK
Sbjct: 181 HPKAMDSLKMMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTTCLRCQDVLK 240

Query: 241 G----------------------------DRSMSSVSNKHRIIAGTVSAVSAAGALGIAI 300
           G                            DRSMSSVSNKHRIIAGTVSAVSAAGALGIA 
Sbjct: 241 GGGSCGFHVETLQFLCICDDNNNVTTYCQDRSMSSVSNKHRIIAGTVSAVSAAGALGIAA 300

[Close]

BLAST of Lsi01G004480 vs. NCBI nr
Match: XP_038883333.1 (uncharacterized protein LOC120074316 isoform X2 [Benincasa hispida])

HSP 1 Score: 567.4 bits (1461), Expect = 7.4e-158
Identity = 282/327 (86.24%), Postives = 289/327 (88.38%), Query Frame = 0


Query: 1   MALFSNSLSPSVLLILSQILTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLFC 60
           MALFSNSLS  VLLI+ Q+LTSF+CVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLFC
Sbjct: 1   MALFSNSLSHGVLLIILQLLTSFLCVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLFC 60

Query: 61  TNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSVS 120
           T+SDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDG NFRP RPFILDPETHLSVS
Sbjct: 61  TDSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGQNFRPIRPFILDPETHLSVS 120

Query: 121 SLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCSY 180
           SLNDYLFFNCSE+DVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALG SSCCSY
Sbjct: 121 SLNDYLFFNCSEEDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGGSSCCSY 180

Query: 181 HPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVLK 240
           HPKAMDSLK+MLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTT+CLRCQDVLK
Sbjct: 181 HPKAMDSLKMMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTTCLRCQDVLK 240

Query: 241 G----------------------------DRSMSSVSNKHRIIAGTVSAVSAAGALGIAI 300
           G                            DRSMSSVSNKHRIIA  VSAVSAAGALGIA 
Sbjct: 241 GGGSCGFHVETLQFLCICDDNNNVTTYCQDRSMSSVSNKHRIIA--VSAVSAAGALGIAA 300

[Close]

BLAST of Lsi01G004480 vs. NCBI nr
Match: XP_004134776.1 (uncharacterized protein LOC101222449 [Cucumis sativus] >KGN49088.1 hypothetical protein Csa_003564 [Cucumis sativus])

HSP 1 Score: 528.1 bits (1359), Expect = 5.0e-146
Identity = 262/328 (79.88%), Postives = 280/328 (85.37%), Query Frame = 0


Query: 1   MALFSNSLSPSVLLILSQI-LTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLF 60
           M L SNSLSP VLLI+SQI LTSF+CVK+TCRTSCGNIPIHYPFGIDDGCGSLYYRNLL+
Sbjct: 4   MPLVSNSLSP-VLLIMSQIFLTSFLCVKATCRTSCGNIPIHYPFGIDDGCGSLYYRNLLY 63

Query: 61  CTNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSV 120
           CTNSDKLELRT T TYPVSAISYSDPYILISDPDMWTCQDG NFRPTRPF+LDPETHLSV
Sbjct: 64  CTNSDKLELRTTTRTYPVSAISYSDPYILISDPDMWTCQDGQNFRPTRPFVLDPETHLSV 123

Query: 121 SSLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCS 180
           S LND+LFFNCSE +VMIAPKPVFCGRFPDRCDASCDSASYLCTH+P C TALG SSCCS
Sbjct: 124 SPLNDFLFFNCSEQNVMIAPKPVFCGRFPDRCDASCDSASYLCTHLPGCETALGESSCCS 183

Query: 181 YHPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVL 240
           Y PKAMDSL++M+KYC SYTSVYWRSV DGDN DQ+AEYGIRIDFDFLVTT+CL CQDVL
Sbjct: 184 YSPKAMDSLRMMVKYCGSYTSVYWRSVGDGDNKDQIAEYGIRIDFDFLVTTTCLGCQDVL 243

Query: 241 KG----------------------------DRSMSSVSNKHRIIAGTVSAVSAAGALGIA 300
           KG                            D+S+SSVS+KHRIIAGTVSAVSAAGALGIA
Sbjct: 244 KGGGSCGFDVETLQFLCICGDNNNVTTYCQDQSISSVSHKHRIIAGTVSAVSAAGALGIA 303

[Close]

BLAST of Lsi01G004480 vs. NCBI nr
Match: XP_008440028.1 (PREDICTED: uncharacterized protein LOC103484627 isoform X1 [Cucumis melo] >TYK13027.1 uncharacterized protein E5676_scaffold255G006280 [Cucumis melo var. makuwa])

HSP 1 Score: 524.6 bits (1350), Expect = 5.5e-145
Identity = 261/328 (79.57%), Postives = 277/328 (84.45%), Query Frame = 0


Query: 1   MALFSNSLSPSVLLILSQI-LTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLF 60
           M L SN LSP V LILSQI LTSF+CV++TCRTSCG+IPIHYPFGIDDGCGSLYYRNLL+
Sbjct: 1   MQLVSNPLSP-VRLILSQIFLTSFLCVEATCRTSCGSIPIHYPFGIDDGCGSLYYRNLLY 60

Query: 61  CTNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSV 120
           CTNSDKLELRTPTGTYPVS ISYSDPYILISDPDMW CQDG NFRPTRPFILDPETHLSV
Sbjct: 61  CTNSDKLELRTPTGTYPVSTISYSDPYILISDPDMWACQDGQNFRPTRPFILDPETHLSV 120

Query: 121 SSLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCS 180
           S LND+LFFNCSE +VMIAPKPVFCGRFPDRCDASCDSASYLCTH+P C TALG SSCCS
Sbjct: 121 SPLNDFLFFNCSEQNVMIAPKPVFCGRFPDRCDASCDSASYLCTHLPGCETALGESSCCS 180

Query: 181 YHPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVL 240
           Y PKA+DSLK+M+KYC SYTSVYWRSV DGDN DQ+AEYGIRIDFDFLVTT+CL CQDVL
Sbjct: 181 YSPKAVDSLKMMVKYCGSYTSVYWRSVGDGDNKDQIAEYGIRIDFDFLVTTTCLGCQDVL 240

Query: 241 KG----------------------------DRSMSSVSNKHRIIAGTVSAVSAAGALGIA 300
           KG                            D+S SSVSNKHRIIAGTVSAVSAAGALGIA
Sbjct: 241 KGGGSCGFDVETLQFLCICDGNNNVTTYCQDQSKSSVSNKHRIIAGTVSAVSAAGALGIA 300

[Close]

BLAST of Lsi01G004480 vs. NCBI nr
Match: XP_008440029.1 (PREDICTED: uncharacterized protein LOC103484627 isoform X2 [Cucumis melo])

HSP 1 Score: 505.0 bits (1299), Expect = 4.5e-139
Identity = 250/313 (79.87%), Postives = 266/313 (84.98%), Query Frame = 0


Query: 1   MALFSNSLSPSVLLILSQI-LTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLF 60
           M L SN LSP V LILSQI LTSF+CV++TCRTSCG+IPIHYPFGIDDGCGSLYYRNLL+
Sbjct: 1   MQLVSNPLSP-VRLILSQIFLTSFLCVEATCRTSCGSIPIHYPFGIDDGCGSLYYRNLLY 60

Query: 61  CTNSDKLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSV 120
           CTNSDKLELRTPTGTYPVS ISYSDPYILISDPDMW CQDG NFRPTRPFILDPETHLSV
Sbjct: 61  CTNSDKLELRTPTGTYPVSTISYSDPYILISDPDMWACQDGQNFRPTRPFILDPETHLSV 120

Query: 121 SSLNDYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGASSCCS 180
           S LND+LFFNCSE +VMIAPKPVFCGRFPDRCDASCDSASYLCTH+P C TALG SSCCS
Sbjct: 121 SPLNDFLFFNCSEQNVMIAPKPVFCGRFPDRCDASCDSASYLCTHLPGCETALGESSCCS 180

Query: 181 YHPKAMDSLKLMLKYCASYTSVYWRSVEDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVL 240
           Y PKA+DSLK+M+KYC SYTSVYWRSV DGDN DQ+AEYGIRIDFDFLVTT+CL CQDVL
Sbjct: 181 YSPKAVDSLKMMVKYCGSYTSVYWRSVGDGDNKDQIAEYGIRIDFDFLVTTTCLGCQDVL 240

Query: 241 KGDRS-------------MSSVSNKHRIIAGTVSAVSAAGALGIAITILLLKKLKKAKAP 300
           KG  S                 +N      GTVSAVSAAGALGIA TIL +KKLKKA AP
Sbjct: 241 KGGGSCGFDVETLQFLCICDGNNNVTTYCQGTVSAVSAAGALGIAATILFVKKLKKANAP 300

[Close]

BLAST of Lsi01G004480 vs. TAIR 10
Match: AT1G11915.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 346.7 bits (888), Expect = 1.9e-95
Identity = 175/324 (54.01%), Postives = 224/324 (69.14%), Query Frame = 0


Query: 11  SVLLILSQILTSFICVKST------CRTSCGNIPIHYPFGIDDGCGSLYYRNLLFCTNSD 70
           S ++  S ++T  +   +T      CR+SCGNIPI+YPF IDDGCGS YYR++L C+++D
Sbjct: 6   SYIIFFSLLMTILLQSSTTSSQSNLCRSSCGNIPINYPFSIDDGCGSPYYRHMLICSDND 65

Query: 71  -KLELRTPTGTYPVSAISYSDPYILISDPDMWTCQDGSNFRPTRPFILDPETHLSVSSLN 130
            KLELRTP+G YPV +ISYSDP++L+SDP MW CQD  NFRPTR F +D  TH +VS  N
Sbjct: 66  TKLELRTPSGKYPVKSISYSDPHLLVSDPFMWNCQDRDNFRPTRSFSIDSSTHFTVSPQN 125

Query: 131 DYLFFNCSEDDVMIAPKPVFCGRFPDRCDASCDSASYLCTHVPECATALGAS-SCCSYHP 190
           DYLFFNC+ D V++ PKP+FC RFPDRCD+SCDS+SYLC H+PEC +ALG+  SCCSY+P
Sbjct: 126 DYLFFNCNTDKVIVEPKPLFCERFPDRCDSSCDSSSYLCRHLPECGSALGSRVSCCSYYP 185

Query: 191 KAMDSLKLMLKYCASYTSVYWRSV-EDGDNNDQVAEYGIRIDFDFLVTTSCLRCQDVLKG 250
           KA  SL+LML+ CA+YTSVYWRS   +    DQ  EYGIR+D++F VT  CL CQ+  KG
Sbjct: 186 KATQSLRLMLQDCATYTSVYWRSTGVENAPYDQFPEYGIRVDYEFPVTMKCLLCQETTKG 245

Query: 251 D-------------------------RSMSSVSNKH-RIIAGTVSAVSAAGALGIAITIL 300
                                     +  S V++K    IAGTV+AVSAAGA+G+A  + 
Sbjct: 246 GGVCGFNTRTRDFLCLCKQGNVTTYCKDPSLVNHKRVGAIAGTVTAVSAAGAIGVAGGVY 305

[Close]

BLAST of Lsi01G004480 vs. TAIR 10
Match: AT3G17350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 6.5e-19
Identity = 69/220 (31.36%), Postives = 100/220 (45.45%), Query Frame = 0


Query: 28  STCRTSCGNIPIHYPFGIDDGCGSLYYRNLLFCTNSDKLELRTPTGTYPVSAISYSDPYI 87
           ++CRT CGNIPI+YPFGID GCGS  YR +  C  S  L   TP+G+Y V +I Y    +
Sbjct: 29  TSCRTLCGNIPINYPFGIDGGCGSPQYRGMFNC--STDLYFTTPSGSYKVQSIDYEKKTM 88

Query: 88  LISDPDMWTCQDGSNFRPTRPFILDPETHLSVSSLNDYLF--FNCSEDDVMIAPKPVFC- 147
           +I DP M TC   S  +P   F +    +  +    D +F  FNCS D  +       C 
Sbjct: 89  VIFDPAMSTC---SILQPHHDFKMADIQNTLIRPSYDTVFALFNCSNDSPVHNRYRNLCF 148

Query: 148 ---GRFPDRCDASCDSASYLCTHVP--ECATALGASSCCSYHPKAMDSLKLMLKYCASYT 207
              G   D   +SC S     T  P    +T      CC  +   +  + + +  C+ YT
Sbjct: 149 NAAGHSCDELYSSCTSFRIFNTTSPYGNNSTVHTTPYCCFTNYDTVRVMSMNILDCSHYT 208

Query: 208 SVYWRSVEDGDNNDQVA---EYGIRIDFDFLVTTSCLRCQ 237
           +V    +++G           YGI + +  +    C RC+
Sbjct: 209 TV----IDNGKMRGVGPLDWSYGIELSYS-VTEIGCDRCR 238

[Close]

BLAST of Lsi01G004480 vs. TAIR 10
Match: AT5G50290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 300 Blast hits to 300 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 7.9e-17
Identity = 67/212 (31.60%), Postives = 98/212 (46.23%), Query Frame = 0


Query: 12  VLLILSQILTSFICVKSTCRTSCGNIPIHYPFGIDDGCGSLYYRNLLFCTNSDKLELRTP 71
           ++LILS +    ICV   CR+ CGNI + YPFGI +GCG   YR+LLFC N D L     
Sbjct: 4   LILILSFVTLFEICVVDACRSYCGNITVDYPFGIRNGCGHPGYRDLLFCMN-DVLMFHIS 63

Query: 72  TGTYPVSAISYSDPYILISDPDMWTCQ------DGSNFRPTRPFILDPET-HLSVSSLND 131
           +G+Y V  I Y+   I + DP M  C+       G+ F        D  T + + +S N 
Sbjct: 64  SGSYRVLDIDYAYQSITLHDPHMSNCETIVLGGKGNGFEAE-----DWRTPYFNPTSDNV 123

Query: 132 YLFFNCSEDDVMIAPK-PVFCGRFPDR-----------CD--ASCDSASYLCTHVPECAT 191
           ++   CS       PK P+F G FP++           C+   SC +   +    P   +
Sbjct: 124 FMLIGCS-------PKSPIFQG-FPEKKVPCRNISGMSCEEYMSCPAWDMVGYRQPGIHS 183

Query: 192 ALGASSCCSYHPKAMDSLKLMLKYCASYTSVY 203
             G   CC    +++ ++ L    C  Y+S Y
Sbjct: 184 GSGPPMCCGVGFESVKAINLSKLECEGYSSAY 201

The following BLAST results are available for this feature:

BLAST of Lsi01G004480 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G004480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHS5	2.4e-146	79.88	GUB_WAK_bind domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G51352...	[more]
A0A5D3CM55	2.7e-145	79.57	GUB_WAK_bind domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3B0S2	2.7e-145	79.57	uncharacterized protein LOC103484627 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B0W4	2.2e-139	79.87	uncharacterized protein LOC103484627 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1KT12	9.5e-135	76.73	uncharacterized protein LOC111496970 OS=Cucurbita maxima OX=3661 GN=LOC111496970...	[more]

BLAST of Lsi01G004480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883332.1	1.2e-160	86.85	uncharacterized protein LOC120074316 isoform X1 [Benincasa hispida]	[more]
XP_038883333.1	7.4e-158	86.24	uncharacterized protein LOC120074316 isoform X2 [Benincasa hispida]	[more]
XP_004134776.1	5.0e-146	79.88	uncharacterized protein LOC101222449 [Cucumis sativus] >KGN49088.1 hypothetical ...	[more]
XP_008440028.1	5.5e-145	79.57	PREDICTED: uncharacterized protein LOC103484627 isoform X1 [Cucumis melo] >TYK13...	[more]
XP_008440029.1	4.5e-139	79.87	PREDICTED: uncharacterized protein LOC103484627 isoform X2 [Cucumis melo]	[more]

BLAST of Lsi01G004480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11915.1	1.9e-95	54.01	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G17350.1	6.5e-19	31.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G50290.1	7.9e-17	31.60	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025287	Wall-associated receptor kinase, galacturonan-binding domain	PFAM	PF13947	GUB_WAK_bind	coord: 30..90 e-value: 4.3E-11 score: 43.1
None	No IPR available	PANTHER	PTHR33355	WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN-RELATED	coord: 13..243
None	No IPR available	PANTHER	PTHR33355:SF5	F12F1.23 PROTEIN	coord: 13..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004480.1	Lsi01G004480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030247	polysaccharide binding