Lsi01G004370 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G004370
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHydantoin utilization protein B
Locationchr01: 3664982 .. 3665438 (-)
RNA-Seq ExpressionLsi01G004370
SyntenyLsi01G004370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACATACCAAAAGCTCCTATTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACACATTATACGCAATGGGCCTTGAAAACCTCGACGCAACCGTGTGTTCGACACGCAGCTCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGGTCAGGAATGTGCGCAGTGGACGTGGATTGGGGAGACTCCCATTTGAGTAGCGTAAAAGTAAGCTGTAAGCAGCCGTAAACAGAAGATTAATATTTGCGATTTCCATTCCACAGACGCGAACAAATTGGGGAGAAAAAGGAAGTGTGGGCGTCAGAATTGGTGCTCGGCCTCTATGGGCACAGAGGGGTTCGAATTGGAGAATATTCTCTGAAACTGGGCATTGCCAGAAGCAGGGGAACAGAAGTGGAATCCTAAGCAAAGGAATTATGGCGGAGTTAGACTTG

mRNA sequence

GAAACATACCAAAAGCTCCTATTGAAAGCGAACCTCATAATTCCGGTTGCGACTTTTCGTCGAACACATTATACGCAATGGGCCTTGAAAACCTCGACGCAACCGTGTGTTCGACACGCAGCTCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGGTCAGGAATGTGCGCAGTGGACGTGGATTGGGGAGACTCCCATTTGAGTAGCGTAAAAACGCGAACAAATTGGGGAGAAAAAGGAAGTGTGGGCGTCAGAATTGGTGCTCGGCCTCTATGGGCACAGAGGGGTTCGAATTGGAGAATATTCTCTGAAACTGGGCATTGCCAGAAGCAGGGGAACAGAAGTGGAATCCTAAGCAAAGGAATTATGGCGGAGTTAGACTTG

Coding sequence (CDS)

ATGGGCCTTGAAAACCTCGACGCAACCGTGTGTTCGACACGCAGCTCATGCTTAGGAAATAGCATGTCAGAATTTCCTCGCACAGTAACACGTCGGTCAGGAATGTGCGCAGTGGACGTGGATTGGGGAGACTCCCATTTGAGTAGCGTAAAAACGCGAACAAATTGGGGAGAAAAAGGAAGTGTGGGCGTCAGAATTGGTGCTCGGCCTCTATGGGCACAGAGGGGTTCGAATTGGAGAATATTCTCTGAAACTGGGCATTGCCAGAAGCAGGGGAACAGAAGTGGAATCCTAAGCAAAGGAATTATGGCGGAGTTAGACTTG

Protein sequence

MGLENLDATVCSTRSSCLGNSMSEFPRTVTRRSGMCAVDVDWGDSHLSSVKTRTNWGEKGSVGVRIGARPLWAQRGSNWRIFSETGHCQKQGNRSGILSKGIMAELDL
Homology
[Close]
BLAST of Lsi01G004370 vs. ExPASy TrEMBL
Match: A0A0A0KN07 (Hydantoin utilization protein B OS=Cucumis sativus OX=3659 GN=Csa_6G513650 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 0 

Query: 1   MGLENLDATVCSTRSSCLGNSMSEFPRTVTRRSGMCAVDVDWGDSHLSSVKTRTNWGEKG 60
           M LENLD TVCSTRS CLGNSMSEFPRTVTRRSGM AV VDWGDSH SSVKTRTNW EK 
Sbjct: 25  MDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMSAVGVDWGDSHWSSVKTRTNWEEKE 84

Query: 61  SVGVRIGARPLWAQRGSNWRIFSETGHCQKQGNRSGILSKGIMAELDL 109
           +  VR+ ARPLWA+ GSNWRIFSET   QKQ NRSGILS+GIMAELDL
Sbjct: 85  NESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSGILSRGIMAELDL 132

[Close]
BLAST of Lsi01G004370 vs. ExPASy TrEMBL
Match: A0A5D3CM64 (Hydantoin utilization protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006390 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.6e-29
Identity = 72/106 (67.92%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 3   LENLDATVCSTRSSCLGNSMSEFPRTVTRRSGMCAVDVDWGDSHLSSVKTRTNWGEKGSV 62
           LENLD TVCSTRS CLGNSMSEFPRT                       TRTNWGEK +V
Sbjct: 27  LENLDETVCSTRSPCLGNSMSEFPRT-----------------------TRTNWGEKENV 86

Query: 63  GVRIGARPLWAQRGSNWRIFSETGHCQKQGNRSGILSKGIMAELDL 109
           GVR+ ARPLWA+RGSNWRIFSET   QKQ NRSGILSKGIMAELDL
Sbjct: 87  GVRVRARPLWAKRGSNWRIFSETEQWQKQRNRSGILSKGIMAELDL 109

[Close]
BLAST of Lsi01G004370 vs. NCBI nr
Match: KGN49101.1 (hypothetical protein Csa_003514 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 3.5e-41
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 0 

Query: 1   MGLENLDATVCSTRSSCLGNSMSEFPRTVTRRSGMCAVDVDWGDSHLSSVKTRTNWGEKG 60
           M LENLD TVCSTRS CLGNSMSEFPRTVTRRSGM AV VDWGDSH SSVKTRTNW EK 
Sbjct: 25  MDLENLDETVCSTRSPCLGNSMSEFPRTVTRRSGMSAVGVDWGDSHWSSVKTRTNWEEKE 84

Query: 61  SVGVRIGARPLWAQRGSNWRIFSETGHCQKQGNRSGILSKGIMAELDL 109
           +  VR+ ARPLWA+ GSNWRIFSET   QKQ NRSGILS+GIMAELDL
Sbjct: 85  NESVRVRARPLWAKMGSNWRIFSETEQWQKQRNRSGILSRGIMAELDL 132

[Close]
BLAST of Lsi01G004370 vs. NCBI nr
Match: TYK13037.1 (Hydantoin utilization protein B [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-28
Identity = 72/106 (67.92%), Postives = 75/106 (70.75%), Query Frame = 0 

Query: 3   LENLDATVCSTRSSCLGNSMSEFPRTVTRRSGMCAVDVDWGDSHLSSVKTRTNWGEKGSV 62
           LENLD TVCSTRS CLGNSMSEFPRT                       TRTNWGEK +V
Sbjct: 27  LENLDETVCSTRSPCLGNSMSEFPRT-----------------------TRTNWGEKENV 86

Query: 63  GVRIGARPLWAQRGSNWRIFSETGHCQKQGNRSGILSKGIMAELDL 109
           GVR+ ARPLWA+RGSNWRIFSET   QKQ NRSGILSKGIMAELDL
Sbjct: 87  GVRVRARPLWAKRGSNWRIFSETEQWQKQRNRSGILSKGIMAELDL 109

The following BLAST results are available for this feature:
BLAST of Lsi01G004370 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G004370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN071.7e-4181.48Hydantoin utilization protein B OS=Cucumis sativus OX=3659 GN=Csa_6G513650 PE=4 ... [more]
A0A5D3CM649.6e-2967.92Hydantoin utilization protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of Lsi01G004370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49101.13.5e-4181.48hypothetical protein Csa_003514 [Cucumis sativus][more]
TYK13037.12.0e-2867.92Hydantoin utilization protein B [Cucumis melo var. makuwa][more]
BLAST of Lsi01G004370 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004370.1Lsi01G004370.1mRNA