Lsi01G004160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G004160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Patatin
Location	chr01: 3545574 .. 3545933 (+)
RNA-Seq Expression	Lsi01G004160
Synteny	Lsi01G004160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCTCTGGTGATGAAGGAGATTGAGTACTTCACCAAGCTTGAGCTCGAACGCCATGACGGCTCTCACACTATAAGTGCAGATGCTTTGAGACGAAGCGATTCTAAAGGAAGCTTTTGGCTTTTGTCCTTAACTTGGAAGTGGAAGAAGAGAAAAAGCAACAATGGGATTTTCCCTAACATTTGCTCTGCTGTTGAATTCTCAAAAAGCAATCGCTTTAATGGGATTCCTGGTTTCGGTTACAGGATTCTCAAAGATGACTTTCCCATTTGA

mRNA sequence

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCTCTGGTGATGAAGGAGATTGAGTACTTCACCAAGCTTGAGCTCGAACGCCATGACGGCTCTCACACTATAAGTGCAGATGCTTTGAGACGAAGCGATTCTAAAGGAAGCTTTTGGCTTTTGTCCTTAACTTGGAAGTGGAAGAAGAGAAAAAGCAACAATGGGATTTTCCCTAACATTTGCTCTGCTGTTGAATTCTCAAAAAGCAATCGCTTTAATGGGATTCCTGGTTTCGGTTACAGGATTCTCAAAGATGACTTTCCCATTTGA

Coding sequence (CDS)

ATGTATAAAGGGATGAGCAGAAGCAGAAGCTTCTCTGAGAAAATGGGTGGTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCTCTGGTGATGAAGGAGATTGAGTACTTCACCAAGCTTGAGCTCGAACGCCATGACGGCTCTCACACTATAAGTGCAGATGCTTTGAGACGAAGCGATTCTAAAGGAAGCTTTTGGCTTTTGTCCTTAACTTGGAAGTGGAAGAAGAGAAAAAGCAACAATGGGATTTTCCCTAACATTTGCTCTGCTGTTGAATTCTCAAAAAGCAATCGCTTTAATGGGATTCCTGGTTTCGGTTACAGGATTCTCAAAGATGACTTTCCCATTTGA

Protein sequence

MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADALRRSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI

Homology

[Close]

BLAST of Lsi01G004160 vs. ExPASy TrEMBL
Match: A0A0A0KL84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 110/120 (91.67%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTKLELERH  SHTIS +AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDS+GSFWLLSLTWKWKKRK NNG+ PNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Lsi01G004160 vs. ExPASy TrEMBL
Match: A0A5D3CRM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006580 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFT LELERH  SHTI  +AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRK+NNGI PNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Lsi01G004160 vs. ExPASy TrEMBL
Match: A0A1S3B3D8 (uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFT LELERH  SHTI  +AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRK+NNGI PNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Lsi01G004160 vs. ExPASy TrEMBL
Match: A0A6J1IJL8 (uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.5e-51
Identity = 102/119 (85.71%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADALR 60
           MYKGMSRSRSFSEKM G+APLAIGTRGTVGSLVMKEIEYFTK E+ERH  S  IS DA R
Sbjct: 1   MYKGMSRSRSFSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RSD KGSFWL+SLTWKWKKRK NNGI PNICSAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

[Close]

BLAST of Lsi01G004160 vs. ExPASy TrEMBL
Match: A0A6J1EEE9 (uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC111433571 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.3e-50
Identity = 101/122 (82.79%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADALR 60
           MY+G+SRS SFSE+MG VAPLAIGTRGT+GSLVMKEIEYFTKLELERH GS  +S DA R
Sbjct: 1   MYEGISRSSSFSEEMGAVAPLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDD---F 120
           RSDSK SFWLLSL+WKWKKR++NNGI PNICSAVE SKSNRFNGIPGFGYRILKDD   F
Sbjct: 61  RSDSKTSFWLLSLSWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDVTHF 120

[Close]

BLAST of Lsi01G004160 vs. NCBI nr
Match: XP_038882225.1 (uncharacterized protein LOC120073447 [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 3.1e-59
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADALR 60
           MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERH GSHTIS DALR
Sbjct: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGGSHTISGDALR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RSDSKGSFWLLSLTWKWKKRK+NNGI PNICSAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RSDSKGSFWLLSLTWKWKKRKNNNGILPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 119

[Close]

BLAST of Lsi01G004160 vs. NCBI nr
Match: XP_011658506.1 (uncharacterized protein LOC105436036 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 110/120 (91.67%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFTKLELERH  SHTIS +AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGISHTISGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDS+GSFWLLSLTWKWKKRK NNG+ PNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSRGSFWLLSLTWKWKKRKGNNGVLPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Lsi01G004160 vs. NCBI nr
Match: XP_008441098.1 (PREDICTED: uncharacterized protein LOC103485325 [Cucumis melo] >TYK13056.1 uncharacterized protein E5676_scaffold255G006580 [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 3.0e-54
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGG-VAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADAL 60
           MYKGMSRSRSFSEKMGG VAPLAIGTRGTVGSLVMKEIEYFT LELERH  SHTI  +AL
Sbjct: 1   MYKGMSRSRSFSEKMGGAVAPLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNAL 60

Query: 61  RRSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RRSDSKGSFWLLSLTWKWKKRK+NNGI PNI SAVEFSKSNRFNGIPGFGYRILKDDFPI
Sbjct: 61  RRSDSKGSFWLLSLTWKWKKRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDDFPI 120

[Close]

BLAST of Lsi01G004160 vs. NCBI nr
Match: XP_022977336.1 (uncharacterized protein LOC111477686 [Cucurbita maxima])

HSP 1 Score: 211.8 bits (538), Expect = 3.1e-51
Identity = 102/119 (85.71%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADALR 60
           MYKGMSRSRSFSEKM G+APLAIGTRGTVGSLVMKEIEYFTK E+ERH  S  IS DA R
Sbjct: 1   MYKGMSRSRSFSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RSD KGSFWL+SLTWKWKKRK NNGI PNICSAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

[Close]

BLAST of Lsi01G004160 vs. NCBI nr
Match: KAG6603769.1 (hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50
Identity = 101/119 (84.87%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MYKGMSRSRSFSEKMGGVAPLAIGTRGTVGSLVMKEIEYFTKLELERHDGSHTISADALR 60
           MYKGMSRSRS SEKM G+APLAIGTRGTVGSLVMKEIEYFTK E+ERH  S  IS DA R
Sbjct: 1   MYKGMSRSRSLSEKMDGIAPLAIGTRGTVGSLVMKEIEYFTKFEVERHGSSQRISGDASR 60

Query: 61  RSDSKGSFWLLSLTWKWKKRKSNNGIFPNICSAVEFSKSNRFNGIPGFGYRILKDDFPI 120
           RSD KGSFWL+SLTWKWKKRK NNGI PNICSAVE SKSNRFNGIPGF YRILK DFPI
Sbjct: 61  RSDCKGSFWLVSLTWKWKKRKGNNGILPNICSAVELSKSNRFNGIPGFSYRILKHDFPI 119

[Close]

BLAST of Lsi01G004160 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-16
Identity = 47/109 (43.12%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 19  APLAIGTRGTVGSLVMKEIEYFTKL-----ELERHDGSHTISADALR---RSDSKGSFWL 78
           AP+AIGTRGT+GSLV KEI+YF        + +   G+   + +  +   RS S+   W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 79  LSLTWKWKKRKSNNG---IFPNICSAVEFSKSNRFNGIPGFGYRILKDD 117
               W+ KKR++  G    FP++CSAVE S  NR   +PGF YRILK D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of Lsi01G004160 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G004160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL84	1.1e-54	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1	[more]
A0A5D3CRM5	1.5e-54	91.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B3D8	1.5e-54	91.67	uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=...	[more]
A0A6J1IJL8	1.5e-51	85.71	uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686...	[more]
A0A6J1EEE9	8.3e-50	82.79	uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC1114335...	[more]

BLAST of Lsi01G004160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882225.1	3.1e-59	96.64	uncharacterized protein LOC120073447 [Benincasa hispida]	[more]
XP_011658506.1	2.3e-54	91.67	uncharacterized protein LOC105436036 [Cucumis sativus]	[more]
XP_008441098.1	3.0e-54	91.67	PREDICTED: uncharacterized protein LOC103485325 [Cucumis melo] >TYK13056.1 uncha...	[more]
XP_022977336.1	3.1e-51	85.71	uncharacterized protein LOC111477686 [Cucurbita maxima]	[more]
KAG6603769.1	1.6e-50	84.87	hypothetical protein SDJN03_04378, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi01G004160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	3.5e-16	43.12	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 7..116
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 7..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004160.1	Lsi01G004160.1	mRNA