Lsi01G004110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G004110
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHomeobox-leucine zipper protein
Locationchr01: 3510514 .. 3513982 (+)
RNA-Seq ExpressionLsi01G004110
SyntenyLsi01G004110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATCTCAACTTCCTTTCATATTTTCTTTCCCATTTCTCTGATATCTTTTTTTCTTCCAAATTCCCACTCACAGAAACCCTTCATATCATTATTCCAACCTCCATTTGCCTTGTGTTTCTTTCCCTCCCTTTCTTATTTCACTCTTAAGTCCTCTGGCTATTACATTACACTCTTCCAACTCTCTTTTCCCATAATTCTTACAATAATATATTGTTATATAATTACATTCCCAAACCAAACCCTTTTCCCTCTTTTTTCCACTATCATGATTCTGCCTTTCCCTTAACCTCCCTTCCTGCTTCATTTTCTGCCCCAATCCAACCAGGTAACTTCTTCTTTTACCTTCATTTTATTGTATGTAATAATATTTTCCTTCACAAGCAAGAAAATATCCAACCAACTTGTCTCAATCAAAACTAACATTCACATGCATTTTATTATTATTTTGTAGTAAAGAGATTGGTGCAATGAGTACATCTCTGCACTTATCTTTGTGCAACCCATCCAGTTATCTAATTAATATTTGTTACTTTACAAGTTTTTATTTTCTTGAAAAAAGAATGACATTTGATTGTATCTCAAGCTGTATTTATCTTTATGTACATAGACCGCATCTAAGTATTATTAAAAAATATATATATATATATATATATATTTTAAAACTTTTTTTGTTAAGTAAATTAAGAAGATGTATATAGAAGGGTGTAACTCAAGCTACACCTAAGTATTACTATAGAAAAAAATTTATATTTTTTAACATACTCAAATGCATATTAATCATGTGGTTAATTATTTTTGATTGATTAGGTAAGGAATTTGAATATGATTTGTAATTAAGAGGCACAGTTTCCGATATGGTTTATTAATTTGCAATTTAAATAATTTGTTGAAGGACTTTGTTTTTACTGTAGAGTAAAAAAAAATTTAAAATTAAAACTAGGACTAGGTTCCCTAAAAACTAGGTACTGTATCAGGCACCATTTCGTACAAATCGGACATAGAACTTACAATGACGAATTCACCATTAAAAACCCAATCAAAATCAATGTTCTGTTTTCCTTTTTCTTTTTGGGTTTCTCACTGACGAAGAATTGCATGCATGTTGTGTTGTTTTTTTCTTCTTTACTTAGTGAAGCCTGGAAGAAGGTTATTTATTGTATATTGGAGAGCGAAGATGTTTGATCCAGATATGTTCGATACTCACCATCATATGCTTGACGAGTTGGAAAATATGAGAGATGATGAATTTGATACCAAATCAGGCGCAGAAATCTTAGAAGTTGCTTGTGCAACTGACCAACAACGCTCTAAGAAGAAACGTTATAATCGTCATACACAACATCAAATCCAAGAAATGGAAGCGTAAGCACTCTCGTTATCATGAGCTGTATCTATCTTTTTACGGTCTAACGAATAAAGTCAAAGAAAATGTTATATAATTGTGTGGATGTTATGTATTTGATATTGGACTTTGATGTGTTAGATTCTTCAAAGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGGGAGCTGGGGTTGGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAACGCACACAGATGAAGGTGACAACAATATCTATTTAATATTTGTTTTTAAAGAATAACTACACTTTTTTCGTCTCCCTAAATTTTGGGTCCACTTTTTAATGTTACATAGTCACTTCAAATTTTAAATTTGGTTTCAATTTAGTTATTTCAAAATGTTACAATTTTATCTTTCTGATTTATAGTTTCGTTCTAGTTTTCAAAATTTACTCTTTTAACCTTGATTTTTTACTAAATACTAACTTTCCGCTTTTTACGATTGATGTCTATTATTAATTACTTTTAAAAATTAAAATTATAATTAAGAAAATTTTTACAGATAAAAAAATATCAAACTATTTATAGAAAATAGTAAAAAAAACATTGATAGACATTGATAGACTTCTATTAGCATCTATAAGTGATAGACTTCTATCATTTCTATCACTAGTAGACTCAGATAGAATTCTATTAACGTCTAGCACAACTATCTAAAAATTTTGCTATTTTGTGTAAATAATTTTCCTTATCTTTTTATTTTTAAAAATTTTCCTTATAATTAATTAAGTTTAAGTATTCGAAAGTTTAAATCTTTAAACCCAGAAATCAAATTGAAATAAAACTCAAATCTCAAAGGTAAAATAGTAACATTTTGAAATCAAAAGACTAAATCGGAACTAAATTCCAAAATTAAGGAATAAATGTATAACATTTTGAAATCAAAGTACCAAATAGAAACTTAACCTAAAACCTAGCGATAAAAAATGTTTTTCCGTTTTCGTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAACCCCCACCAGATTCAGATTAGCGTTGAATTTTCTTGTTTATTTTAACACTGAACAACCATTTAATTTCTTCCAGTTTTTTAAAAATTGAATTGGATCACAATAGGTAGATATAGGCTTCGTAGTTATTTGATGACGGAGCCCAGACATTCATGCTGTTAATTATGACAGCTACTTATAAGATTTTTTGGATAGATATGAGTAGAAAAAACTATACTATTACAAGCAACACATTCATTGCAAATTTATTATTCACAAACATATACGGCCGGGTTTATTGTTTGGGCCATTCAAATCAATTTTTTTAAAGATACCAGTTCAATGCTACATTACGTATTTAATTCCATTCAACTTTGAACTTTGACAACTGTTGGACAAAGGGTATTCTTGTAA

mRNA sequence

ATTATCTCAACTTCCTTTCATATTTTCTTTCCCATTTCTCTGATATCTTTTTTTCTTCCAAATTCCCACTCACAGAAACCCTTCATATCATTATTCCAACCTCCATTTGCCTTGTGTTTCTTTCCCTCCCTTTCTTATTTCACTCTTAAGTCCTCTGGCTATTACATTACACTCTTCCAACTCTCTTTTCCCATAATTCTTACAATAATATATTGTTATATAATTACATTCCCAAACCAAACCCTTTTCCCTCTTTTTTCCACTATCATGATTCTGCCTTTCCCTTAACCTCCCTTCCTGCTTCATTTTCTGCCCCAATCCAACCAGCCTGGAAGAAGGTTATTTATTGTATATTGGAGAGCGAAGATGTTTGATCCAGATATGTTCGATACTCACCATCATATGCTTGACGAGTTGGAAAATATGAGAGATGATGAATTTGATACCAAATCAGGCGCAGAAATCTTAGAAGTTGCTTGTGCAACTGACCAACAACGCTCTAAGAAGAAACGTTATAATCGTCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAAGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGGGAGCTGGGGTTGGAGCCATTGCAAGTGAAGTTTTGGGTATTCTTGTAA

Coding sequence (CDS)

ATGTTTGATCCAGATATGTTCGATACTCACCATCATATGCTTGACGAGTTGGAAAATATGAGAGATGATGAATTTGATACCAAATCAGGCGCAGAAATCTTAGAAGTTGCTTGTGCAACTGACCAACAACGCTCTAAGAAGAAACGTTATAATCGTCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAAGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGGGAGCTGGGGTTGGAGCCATTGCAAGTGAAGTTTTGGGTATTCTTGTAA

Protein sequence

MFDPDMFDTHHHMLDELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWVFL
Homology
[Close]
BLAST of Lsi01G004110 vs. ExPASy Swiss-Prot
Match: Q8RWU4 (Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana OX=3702 GN=ATML1 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-25
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 0 

Query: 1   MFDPDMFDTHHHMLD----------ELENMRDDEFDTKSGAEI-----LEVACATDQQR- 60
           M+ P+MF++HHHM D           +    +++F+TKSGAE+     LE       QR 
Sbjct: 1   MYHPNMFESHHHMFDMTPKNSENDLGITGSHEEDFETKSGAEVTMENPLEEELQDPNQRP 60

Query: 61  SKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
           +KKKRY+RHTQ QIQE+E+FFKECPHPDDKQR ELSREL LEPLQVKFW
Sbjct: 61  NKKKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFW 109

[Close]
BLAST of Lsi01G004110 vs. ExPASy Swiss-Prot
Match: Q0J9X2 (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC2 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 63/122 (51.64%), Postives = 77/122 (63.11%), Query Frame = 0 

Query: 4   PDMFDTH------------HHMLDEL-----------------ENMRDDEFDTKSGAEIL 63
           P++ D H            HH+LD++                 + +  DEF++KSG+E +
Sbjct: 30  PNLLDNHQFQQAFQHQQQQHHLLDQIPATTAESGDNMIRSRASDPLGGDEFESKSGSENV 89

Query: 64  EVACATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVK 94
           +     DQ   QR +KKRY+RHTQHQIQEMEAFFKECPHPDDKQR ELSRELGLEPLQVK
Sbjct: 90  DGVSVDDQDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVK 149

[Close]
BLAST of Lsi01G004110 vs. ExPASy Swiss-Prot
Match: Q94C37 (Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana OX=3702 GN=HDG2 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-23
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 1   MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ--- 60
           MF+P+M        D+++H  +  +N     +RDDEFD   TKSG+E  E     DQ   
Sbjct: 1   MFEPNMLLAAMNNADSNNHNYNHEDNNNEGFLRDDEFDSPNTKSGSENQEGGSGNDQDPL 60

Query: 61  QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
             +KKKRY+RHTQ QIQEMEAFFKECPHPDDKQR +LSREL LEPLQVKFW
Sbjct: 61  HPNKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFW 111

[Close]
BLAST of Lsi01G004110 vs. ExPASy Swiss-Prot
Match: Q93V99 (Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=PDF2 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-23
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 0 

Query: 1   MFDPDMFDTHHHMLD-----------ELENMRDDEFDTKSGAEIL------EVACATDQQ 60
           M+ P+MF++ HHM D            +   R+D+F+TKSG E+       E      Q+
Sbjct: 1   MYHPNMFES-HHMFDMTPKSTSDNDLGITGSREDDFETKSGTEVTTENPSGEELQDPSQR 60

Query: 61  RSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
            +KKKRY+RHTQ QIQE+E+FFKECPHPDDKQR ELSR+L LEPLQVKFW
Sbjct: 61  PNKKKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLNLEPLQVKFW 109

[Close]
BLAST of Lsi01G004110 vs. ExPASy Swiss-Prot
Match: Q6ZAR0 (Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC1 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-22
Identity = 56/78 (71.79%), Postives = 63/78 (80.77%), Query Frame = 0 

Query: 23  DEFDTKSGAEILEVA----CATDQ---QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQ 82
           DEF++KS +E ++ A       DQ   QR +KKRY+RHTQHQIQEMEAFFKECPHPDDKQ
Sbjct: 76  DEFESKSCSENVDGAGDGLSGDDQDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQ 135

Query: 83  RMELSRELGLEPLQVKFW 94
           R ELSRELGLEPLQVKFW
Sbjct: 136 RKELSRELGLEPLQVKFW 153

[Close]
BLAST of Lsi01G004110 vs. ExPASy TrEMBL
Match: A0A0A0KN23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514870 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.7e-41
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 1  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQ 60
          MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC TD  QQRSKKKRYNRHTQHQ
Sbjct: 1  MFDPDMFDTTHHHMLEELENMRDDDFDNKSGAEILESACGTDQQQQRSKKKRYNRHTQHQ 60

Query: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
          IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 96

[Close]
BLAST of Lsi01G004110 vs. ExPASy TrEMBL
Match: A0A6J1EER9 (homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like OS=Cucurbita moschata OX=3662 GN=LOC111433546 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.7e-40
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0 

Query: 1   MFDPDMFDTHHHMLD--------ELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNR 60
           MFDPDMFDTHHHMLD        ELEN+RDD+F+ KSGAE+LE AC +DQQRSKKKRYNR
Sbjct: 1   MFDPDMFDTHHHMLDMTFNTSENELENVRDDDFEAKSGAEMLEEACGSDQQRSKKKRYNR 60

Query: 61  HTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
           HTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61  HTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 101

[Close]
BLAST of Lsi01G004110 vs. ExPASy TrEMBL
Match: A0A1S3AZL7 (homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Cucumis melo OX=3656 GN=LOC103484597 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0 

Query: 1  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQ 60
          MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC  D  QQRSKKKRYNRHTQHQ
Sbjct: 1  MFDPDMFDTTHHHMLEELENMRDDDFDNKSGAEILESACGIDQQQQRSKKKRYNRHTQHQ 60

Query: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
          IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 96

[Close]
BLAST of Lsi01G004110 vs. ExPASy TrEMBL
Match: A0A5D3CNN9 (Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006620 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0 

Query: 1  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQ 60
          MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC  D  QQRSKKKRYNRHTQHQ
Sbjct: 1  MFDPDMFDTTHHHMLEELENMRDDDFDNKSGAEILESACGIDQQQQRSKKKRYNRHTQHQ 60

Query: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
          IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 96

[Close]
BLAST of Lsi01G004110 vs. ExPASy TrEMBL
Match: A0A6J1KQC5 (homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like OS=Cucurbita maxima OX=3661 GN=LOC111496689 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 84/101 (83.17%), Postives = 88/101 (87.13%), Query Frame = 0 

Query: 1   MFDPDMFDTHHHMLD--------ELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNR 60
           MFDPDMFDTHHHMLD        ELEN+RDD+F+ KSGAEILE  C +DQQRSKKKRYNR
Sbjct: 1   MFDPDMFDTHHHMLDMAFNTSENELENVRDDDFEAKSGAEILEEGCGSDQQRSKKKRYNR 60

Query: 61  HTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
           HTQHQIQEME FFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61  HTQHQIQEMEVFFKECPHPDDKQRMELSRELGLEPLQVKFW 101

[Close]
BLAST of Lsi01G004110 vs. NCBI nr
Match: XP_038881455.1 (homeobox-leucine zipper protein MERISTEM L1-like [Benincasa hispida] >XP_038881456.1 homeobox-leucine zipper protein MERISTEM L1-like [Benincasa hispida])

HSP 1 Score: 187.6 bits (475), Expect = 5.1e-44
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MFDPDMFDTHHHMLDELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNRHTQHQIQE 60
          MFDPDMFDTHHHML+ELENMRDDEF+TKSGAEILE AC TDQQRSKKKRYNRHTQHQIQE
Sbjct: 1  MFDPDMFDTHHHMLEELENMRDDEFETKSGAEILEAACGTDQQRSKKKRYNRHTQHQIQE 60

Query: 61 MEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
          MEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61 MEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 93

[Close]
BLAST of Lsi01G004110 vs. NCBI nr
Match: XP_004134971.1 (homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis sativus] >XP_011658159.1 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis sativus] >KGN49126.1 hypothetical protein Csa_003643 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 1  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQ 60
          MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC TD  QQRSKKKRYNRHTQHQ
Sbjct: 1  MFDPDMFDTTHHHMLEELENMRDDDFDNKSGAEILESACGTDQQQQRSKKKRYNRHTQHQ 60

Query: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
          IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 96

[Close]
BLAST of Lsi01G004110 vs. NCBI nr
Match: XP_022926381.1 (homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like [Cucurbita moschata] >KAG7026621.1 Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.7 bits (439), Expect = 7.6e-40
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0 

Query: 1   MFDPDMFDTHHHMLD--------ELENMRDDEFDTKSGAEILEVACATDQQRSKKKRYNR 60
           MFDPDMFDTHHHMLD        ELEN+RDD+F+ KSGAE+LE AC +DQQRSKKKRYNR
Sbjct: 1   MFDPDMFDTHHHMLDMTFNTSENELENVRDDDFEAKSGAEMLEEACGSDQQRSKKKRYNR 60

Query: 61  HTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
           HTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61  HTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 101

[Close]
BLAST of Lsi01G004110 vs. NCBI nr
Match: TYK13060.1 (homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 9.9e-40
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0 

Query: 1  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQ 60
          MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC  D  QQRSKKKRYNRHTQHQ
Sbjct: 1  MFDPDMFDTTHHHMLEELENMRDDDFDNKSGAEILESACGIDQQQQRSKKKRYNRHTQHQ 60

Query: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
          IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 96

[Close]
BLAST of Lsi01G004110 vs. NCBI nr
Match: XP_008439968.1 (PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis melo] >XP_008439969.1 PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 9.9e-40
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0 

Query: 1  MFDPDMFD-THHHMLDELENMRDDEFDTKSGAEILEVACATD--QQRSKKKRYNRHTQHQ 60
          MFDPDMFD THHHML+ELENMRDD+FD KSGAEILE AC  D  QQRSKKKRYNRHTQHQ
Sbjct: 1  MFDPDMFDTTHHHMLEELENMRDDDFDNKSGAEILESACGIDQQQQRSKKKRYNRHTQHQ 60

Query: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
          IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW
Sbjct: 61 IQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 96

[Close]
BLAST of Lsi01G004110 vs. TAIR 10
Match: AT4G21750.1 (Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein )

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-26
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 0 

Query: 1   MFDPDMFDTHHHMLD----------ELENMRDDEFDTKSGAEI-----LEVACATDQQR- 60
           M+ P+MF++HHHM D           +    +++F+TKSGAE+     LE       QR 
Sbjct: 1   MYHPNMFESHHHMFDMTPKNSENDLGITGSHEEDFETKSGAEVTMENPLEEELQDPNQRP 60

Query: 61  SKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
           +KKKRY+RHTQ QIQE+E+FFKECPHPDDKQR ELSREL LEPLQVKFW
Sbjct: 61  NKKKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFW 109

[Close]
BLAST of Lsi01G004110 vs. TAIR 10
Match: AT4G21750.2 (Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein )

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-26
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 0 

Query: 1   MFDPDMFDTHHHMLD----------ELENMRDDEFDTKSGAEI-----LEVACATDQQR- 60
           M+ P+MF++HHHM D           +    +++F+TKSGAE+     LE       QR 
Sbjct: 1   MYHPNMFESHHHMFDMTPKNSENDLGITGSHEEDFETKSGAEVTMENPLEEELQDPNQRP 60

Query: 61  SKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
           +KKKRY+RHTQ QIQE+E+FFKECPHPDDKQR ELSREL LEPLQVKFW
Sbjct: 61  NKKKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFW 109

[Close]
BLAST of Lsi01G004110 vs. TAIR 10
Match: AT1G05230.1 (homeodomain GLABROUS 2 )

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-24
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 1   MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ--- 60
           MF+P+M        D+++H  +  +N     +RDDEFD   TKSG+E  E     DQ   
Sbjct: 1   MFEPNMLLAAMNNADSNNHNYNHEDNNNEGFLRDDEFDSPNTKSGSENQEGGSGNDQDPL 60

Query: 61  QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
             +KKKRY+RHTQ QIQEMEAFFKECPHPDDKQR +LSREL LEPLQVKFW
Sbjct: 61  HPNKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFW 111

[Close]
BLAST of Lsi01G004110 vs. TAIR 10
Match: AT1G05230.2 (homeodomain GLABROUS 2 )

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-24
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 1   MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ--- 60
           MF+P+M        D+++H  +  +N     +RDDEFD   TKSG+E  E     DQ   
Sbjct: 1   MFEPNMLLAAMNNADSNNHNYNHEDNNNEGFLRDDEFDSPNTKSGSENQEGGSGNDQDPL 60

Query: 61  QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
             +KKKRY+RHTQ QIQEMEAFFKECPHPDDKQR +LSREL LEPLQVKFW
Sbjct: 61  HPNKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFW 111

[Close]
BLAST of Lsi01G004110 vs. TAIR 10
Match: AT1G05230.3 (homeodomain GLABROUS 2 )

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-24
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 0 

Query: 1   MFDPDMF-------DTHHHMLDELEN-----MRDDEFD---TKSGAEILEVACATDQ--- 60
           MF+P+M        D+++H  +  +N     +RDDEFD   TKSG+E  E     DQ   
Sbjct: 1   MFEPNMLLAAMNNADSNNHNYNHEDNNNEGFLRDDEFDSPNTKSGSENQEGGSGNDQDPL 60

Query: 61  QRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFW 94
             +KKKRY+RHTQ QIQEMEAFFKECPHPDDKQR +LSREL LEPLQVKFW
Sbjct: 61  HPNKKKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELNLEPLQVKFW 111

The following BLAST results are available for this feature:
BLAST of Lsi01G004110 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RWU42.5e-2556.88Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana OX=3702 GN=A... [more]
Q0J9X21.6e-2451.64Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
Q94C375.2e-2357.66Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana OX=3702 GN=HDG2 PE=... [more]
Q93V995.2e-2353.64Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana OX=... [more]
Q6ZAR02.6e-2271.79Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
BLAST of Lsi01G004110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN239.7e-4191.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514870 PE=3 SV=1[more]
A0A6J1EER93.7e-4084.16homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like OS=Cucurbita moschata ... [more]
A0A1S3AZL74.8e-4090.63homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Cucumis melo OX=3656 GN=... [more]
A0A5D3CNN94.8e-4090.63Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Cucumis melo var. makuwa... [more]
A0A6J1KQC51.4e-3983.17homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like OS=Cucurbita maxima OX... [more]
BLAST of Lsi01G004110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038881455.15.1e-4495.70homeobox-leucine zipper protein MERISTEM L1-like [Benincasa hispida] >XP_0388814... [more]
XP_004134971.12.0e-4091.67homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis sativus] >XP_01165... [more]
XP_022926381.17.6e-4084.16homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like [Cucurbita moschata] >... [more]
TYK13060.19.9e-4090.63homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis melo var. makuwa][more]
XP_008439968.19.9e-4090.63PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Cucumis melo] >... [more]
BLAST of Lsi01G004110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G21750.11.8e-2656.88Homeobox-leucine zipper family protein / lipid-binding START domain-containing p... [more]
AT4G21750.21.8e-2656.88Homeobox-leucine zipper family protein / lipid-binding START domain-containing p... [more]
AT1G05230.13.7e-2457.66homeodomain GLABROUS 2 [more]
AT1G05230.23.7e-2457.66homeodomain GLABROUS 2 [more]
AT1G05230.33.7e-2457.66homeodomain GLABROUS 2 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 45..96
e-value: 9.5E-5
score: 31.8
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 47..93
e-value: 3.9E-13
score: 49.0
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 44..96
score: 11.790602
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 46..93
e-value: 4.01265E-13
score: 56.4829
NoneNo IPR availableGENE3D1.10.10.60coord: 34..95
e-value: 1.9E-15
score: 58.2
NoneNo IPR availablePANTHERPTHR45654:SF72HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1coord: 10..94
IPR042160Homeobox-leucine zipper protein GLABRA2/ANL2/PDF2/ATML1-likePANTHERPTHR45654HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1coord: 10..94
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 35..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004110.1Lsi01G004110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0008289 lipid binding