Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATGAGTACATAAAATTTCCCCTAGAAAAATTGAAAGCACCTGGTGGTGGAACCTATAGCTACGGATTAGGATTCAGCCCTAAAACAAAGCAGTACAAAATAGCTCGAATATCCTCTGTACGTGATAAATCCTTGGTAGAGATTTTTAGATTCGGGACAAGTGGCGATTGGACCCCTGTTGGGGTTTTGCCTTCATATGTCACTGAAGAGCATGGCGTTTATTTCAATGGAGGCCTCTATTGGATCGGAGACGAGCTGAACCCACATGATTTTACTAATGTCATTTACCGTTTGGACATAGAAAATGAGAAATTGGAGACAATTTCATTTCCGCAAAATGGCGAAGTTATTTTTTTCCTTGGAGTTTTTGATGGCACCCTCTATCTAACTATTTCCACCGGCTTCATGAGGATGGACAAGTACCATGTGTGGAAGATGGAAGAAGATTTTTCATGGACTAAACAATTTGTTTTACCCAACCCAAAAGAATTGCGTCTTCCTAAGCATCCTCAACAACCTATTGGATCATGTCAACAACGTGTTATGATCTAA
mRNA sequence
ATGACAAATGAGTACATAAAATTTCCCCTAGAAAAATTGAAAGCACCTGGTGGTGGAACCTATAGCTACGGATTAGGATTCAGCCCTAAAACAAAGCAGTACAAAATAGCTCGAATATCCTCTGTACGTGATAAATCCTTGGTAGAGATTTTTAGATTCGGGACAAGTGGCGATTGGACCCCTGTTGGGGTTTTGCCTTCATATGTCACTGAAGAGCATGGCGTTTATTTCAATGGAGGCCTCTATTGGATCGGAGACGAGCTGAACCCACATGATTTTACTAATGTCATTTACCGTTTGGACATAGAAAATGAGAAATTGGAGACAATTTCATTTCCGCAAAATGGCGAAGTTATTTTTTTCCTTGGAGTTTTTGATGGCACCCTCTATCTAACTATTTCCACCGGCTTCATGAGGATGGACAAGTACCATGTGTGGAAGATGGAAGAAGATTTTTCATGGACTAAACAATTTGTTTTACCCAACCCAAAAGAATTGCGTCTTCCTAAGCATCCTCAACAACCTATTGGATCATGTCAACAACGTGTTATGATCTAA
Coding sequence (CDS)
ATGACAAATGAGTACATAAAATTTCCCCTAGAAAAATTGAAAGCACCTGGTGGTGGAACCTATAGCTACGGATTAGGATTCAGCCCTAAAACAAAGCAGTACAAAATAGCTCGAATATCCTCTGTACGTGATAAATCCTTGGTAGAGATTTTTAGATTCGGGACAAGTGGCGATTGGACCCCTGTTGGGGTTTTGCCTTCATATGTCACTGAAGAGCATGGCGTTTATTTCAATGGAGGCCTCTATTGGATCGGAGACGAGCTGAACCCACATGATTTTACTAATGTCATTTACCGTTTGGACATAGAAAATGAGAAATTGGAGACAATTTCATTTCCGCAAAATGGCGAAGTTATTTTTTTCCTTGGAGTTTTTGATGGCACCCTCTATCTAACTATTTCCACCGGCTTCATGAGGATGGACAAGTACCATGTGTGGAAGATGGAAGAAGATTTTTCATGGACTAAACAATTTGTTTTACCCAACCCAAAAGAATTGCGTCTTCCTAAGCATCCTCAACAACCTATTGGATCATGTCAACAACGTGTTATGATCTAA
Protein sequence
MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFTNVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQQRVMI
Homology
BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match:
A0A0A0KJY9 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 SV=1)
HSP 1 Score: 212.6 bits (540), Expect = 1.4e-51
Identity = 111/186 (59.68%), Postives = 132/186 (70.97%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
MTNEY KFP EK K+ G YSYGLGF+PKTKQYKIAR S D+S LVEIF FG++
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSFRPDESTTLVEIFTFGST 194
Query: 61 GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
WTPVG LPS V E+HGVYF GGLYW+ ++ +PHD + + IYRLD+ENEKLE IS PQ
Sbjct: 195 HQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAIYRLDLENEKLEKISCPQ 254
Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
FF GVFDGTLYLT+S + +KY VWKM+++FSW K FV+ P+ L P HP Q
Sbjct: 255 YIGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISRPRNLCHPDHPHQ 314
BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match:
A0A5D3CM94 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006720 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 1.2e-50
Identity = 110/186 (59.14%), Postives = 132/186 (70.97%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
MTNEY KFP EK K+ G YSYGLGF+PK KQYKIAR S D+S LVEIF FG++
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSFRPDESTTLVEIFAFGST 194
Query: 61 GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + + IYRLDIENE LE IS PQ
Sbjct: 195 YQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTIYRLDIENENLEKISCPQ 254
Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
+ FF GVFDGTLYLT+S + +KY VWKM+++FSW K FV+ +P+ L P HP Q
Sbjct: 255 HLGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQ 314
BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match:
A0A1S3B0Q6 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103484583 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 2.6e-50
Identity = 110/186 (59.14%), Postives = 131/186 (70.43%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
MTNEY KFP EK K+ G YSYGLGF+PK KQYKIAR S D+S LVEIF FG+
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSFRPDESTTLVEIFAFGSI 194
Query: 61 GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + + IYRLDIENE LE IS PQ
Sbjct: 195 YQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTIYRLDIENENLEKISCPQ 254
Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
+ FF GVFDGTLYLT+S + +KY VWKM+++FSW K FV+ +P+ L P HP Q
Sbjct: 255 HLGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQ 314
BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match:
A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)
HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 92/188 (48.94%), Postives = 124/188 (65.96%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWT 60
+TNEY K P +LK Y YGLGFSPKT QYK+AR ++ +V+IF FGTS +WT
Sbjct: 138 ITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHNEFIVDIFAFGTSCEWT 197
Query: 61 PVGVLPSYVTEEHGVYFNGGLYWIGDELN-PH----DFTNVIYRLDIENEKLETISFPQN 120
P+G +P+++ E HGVYFNGGLYW+G + P+ D+T V+YRLD+ +EK + IS P
Sbjct: 198 PIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYRLDLNDEKFKKISIPFG 257
Query: 121 GEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQP 180
G+ ++GV++GTLYLT+ YHVWKM+EDFSW+K+FVL P+ + H P
Sbjct: 258 GDEP-YVGVYNGTLYLTLCCEDF---DYHVWKMKEDFSWSKEFVLALPENILHSLHRHHP 317
Query: 181 IGSCQQRV 184
IG Q V
Sbjct: 318 IGYYLQLV 321
BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match:
A0A1S3BQV8 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV=1)
HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 92/188 (48.94%), Postives = 124/188 (65.96%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWT 60
+TNEY K P +LK Y YGLGFSPKT QYK+AR ++ +V+IF FGTS +WT
Sbjct: 138 ITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHNEFIVDIFAFGTSCEWT 197
Query: 61 PVGVLPSYVTEEHGVYFNGGLYWIGDELN-PH----DFTNVIYRLDIENEKLETISFPQN 120
P+G +P+++ E HGVYFNGGLYW+G + P+ D+T V+YRLD+ +EK + IS P
Sbjct: 198 PIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYRLDLNDEKFKKISIPFG 257
Query: 121 GEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQP 180
G+ ++GV++GTLYLT+ YHVWKM+EDFSW+K+FVL P+ + H P
Sbjct: 258 GDEP-YVGVYNGTLYLTLCCEDF---DYHVWKMKEDFSWSKEFVLALPENILHSLHRHHP 317
Query: 181 IGSCQQRV 184
IG Q V
Sbjct: 318 IGYYLQLV 321
BLAST of Lsi01G004000 vs. NCBI nr
Match:
XP_038883771.1 (putative F-box protein At1g60370 [Benincasa hispida])
HSP 1 Score: 229.9 bits (585), Expect = 1.7e-56
Identity = 121/191 (63.35%), Postives = 133/191 (69.63%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKSL--VEIFRFGTS 60
MTNEY KFP EK K G YSYGLGFSP+TKQYKIAR S +RD+S VEIF FGT+
Sbjct: 137 MTNEYFKFPAEKSKTHCCCGRPYSYGLGFSPETKQYKIARTSFLRDESTTSVEIFAFGTT 196
Query: 61 GDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFTNVIYRLDIENEKLETISFPQNG 120
+WTPVGVLPS V E+HGVYFNGGLYW DEL P D N IYRLDIENEKLE IS P G
Sbjct: 197 REWTPVGVLPSLVVEDHGVYFNGGLYWTVDELQPRDSNNAIYRLDIENEKLEKISCPHYG 256
Query: 121 EVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQ--- 180
FF GVFDGTLYLT TG + + Y VWKMEE+ SW K FVL P+ LR P+H Q
Sbjct: 257 GGHFFFGVFDGTLYLTTYTGTVD-NIYQVWKMEENLSWIKAFVLSRPENLRHPEHDQPWG 316
BLAST of Lsi01G004000 vs. NCBI nr
Match:
XP_004134745.1 (F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g07870 [Cucumis sativus] >XP_031743637.1 F-box protein At3g07870 [Cucumis sativus] >KGN49139.1 hypothetical protein Csa_003023 [Cucumis sativus])
HSP 1 Score: 212.6 bits (540), Expect = 2.9e-51
Identity = 111/186 (59.68%), Postives = 132/186 (70.97%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
MTNEY KFP EK K+ G YSYGLGF+PKTKQYKIAR S D+S LVEIF FG++
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSFRPDESTTLVEIFTFGST 194
Query: 61 GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
WTPVG LPS V E+HGVYF GGLYW+ ++ +PHD + + IYRLD+ENEKLE IS PQ
Sbjct: 195 HQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAIYRLDLENEKLEKISCPQ 254
Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
FF GVFDGTLYLT+S + +KY VWKM+++FSW K FV+ P+ L P HP Q
Sbjct: 255 YIGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISRPRNLCHPDHPHQ 314
BLAST of Lsi01G004000 vs. NCBI nr
Match:
TYK13067.1 (putative F-box protein [Cucumis melo var. makuwa])
HSP 1 Score: 209.5 bits (532), Expect = 2.4e-50
Identity = 110/186 (59.14%), Postives = 132/186 (70.97%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
MTNEY KFP EK K+ G YSYGLGF+PK KQYKIAR S D+S LVEIF FG++
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSFRPDESTTLVEIFAFGST 194
Query: 61 GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + + IYRLDIENE LE IS PQ
Sbjct: 195 YQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTIYRLDIENENLEKISCPQ 254
Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
+ FF GVFDGTLYLT+S + +KY VWKM+++FSW K FV+ +P+ L P HP Q
Sbjct: 255 HLGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQ 314
BLAST of Lsi01G004000 vs. NCBI nr
Match:
XP_008439950.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo])
HSP 1 Score: 208.4 bits (529), Expect = 5.4e-50
Identity = 110/186 (59.14%), Postives = 131/186 (70.43%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
MTNEY KFP EK K+ G YSYGLGF+PK KQYKIAR S D+S LVEIF FG+
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSFRPDESTTLVEIFAFGSI 194
Query: 61 GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + + IYRLDIENE LE IS PQ
Sbjct: 195 YQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTIYRLDIENENLEKISCPQ 254
Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
+ FF GVFDGTLYLT+S + +KY VWKM+++FSW K FV+ +P+ L P HP Q
Sbjct: 255 HLGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQ 314
BLAST of Lsi01G004000 vs. NCBI nr
Match:
XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])
HSP 1 Score: 194.1 bits (492), Expect = 1.0e-45
Identity = 98/189 (51.85%), Postives = 129/189 (68.25%), Query Frame = 0
Query: 1 MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWT 60
MTNEY K P + K Y YGLGFSP+TKQYK+AR V + +VEIF FGTS +WT
Sbjct: 139 MTNEYFKLPTFRSKGDSVKDYFYGLGFSPRTKQYKLARTHYVCHEFIVEIFAFGTSCEWT 198
Query: 61 PVGVLPSYVTEEHGVYFNGGLYWIGDELNPH-DFTNVIYRLDIENEKLETISFPQNGE-- 120
PVG +P ++ E HGVYFNGGLYW+G + P+ ++VIYRLD+E++K + ISFP +G+
Sbjct: 199 PVGSVPYFLNEYHGVYFNGGLYWVGGQQLPNAGLSDVIYRLDLEDDKFKQISFPLDGDDE 258
Query: 121 -VIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELR--LPKHPQQ 180
++GV++ TLYLT+ G +YHVWKMEEDFSW K+FVL P+ + LP+H
Sbjct: 259 GDFPYIGVYNDTLYLTLCCGDF---EYHVWKMEEDFSWIKEFVLALPENVHHSLPRH--H 318
Query: 181 PIGSCQQRV 184
PIG C Q +
Sbjct: 319 PIGYCLQLI 322
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KJY9 | 1.4e-51 | 59.68 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 ... | [more] |
A0A5D3CM94 | 1.2e-50 | 59.14 | Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... | [more] |
A0A1S3B0Q6 | 2.6e-50 | 59.14 | putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103484583 PE=4 SV... | [more] |
A0A5D3CIX9 | 1.1e-43 | 48.94 | Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... | [more] |
A0A1S3BQV8 | 1.1e-43 | 48.94 | putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
XP_038883771.1 | 1.7e-56 | 63.35 | putative F-box protein At1g60370 [Benincasa hispida] | [more] |
XP_004134745.1 | 2.9e-51 | 59.68 | F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g0787... | [more] |
TYK13067.1 | 2.4e-50 | 59.14 | putative F-box protein [Cucumis melo var. makuwa] | [more] |
XP_008439950.1 | 5.4e-50 | 59.14 | PREDICTED: putative F-box protein At3g21120 [Cucumis melo] | [more] |
XP_038880514.1 | 1.0e-45 | 51.85 | putative F-box protein At1g46984 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |