Lsi01G004000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G004000
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box domain-containing protein
Locationchr01: 3426066 .. 3426623 (+)
RNA-Seq ExpressionLsi01G004000
SyntenyLsi01G004000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATGAGTACATAAAATTTCCCCTAGAAAAATTGAAAGCACCTGGTGGTGGAACCTATAGCTACGGATTAGGATTCAGCCCTAAAACAAAGCAGTACAAAATAGCTCGAATATCCTCTGTACGTGATAAATCCTTGGTAGAGATTTTTAGATTCGGGACAAGTGGCGATTGGACCCCTGTTGGGGTTTTGCCTTCATATGTCACTGAAGAGCATGGCGTTTATTTCAATGGAGGCCTCTATTGGATCGGAGACGAGCTGAACCCACATGATTTTACTAATGTCATTTACCGTTTGGACATAGAAAATGAGAAATTGGAGACAATTTCATTTCCGCAAAATGGCGAAGTTATTTTTTTCCTTGGAGTTTTTGATGGCACCCTCTATCTAACTATTTCCACCGGCTTCATGAGGATGGACAAGTACCATGTGTGGAAGATGGAAGAAGATTTTTCATGGACTAAACAATTTGTTTTACCCAACCCAAAAGAATTGCGTCTTCCTAAGCATCCTCAACAACCTATTGGATCATGTCAACAACGTGTTATGATCTAA

mRNA sequence

ATGACAAATGAGTACATAAAATTTCCCCTAGAAAAATTGAAAGCACCTGGTGGTGGAACCTATAGCTACGGATTAGGATTCAGCCCTAAAACAAAGCAGTACAAAATAGCTCGAATATCCTCTGTACGTGATAAATCCTTGGTAGAGATTTTTAGATTCGGGACAAGTGGCGATTGGACCCCTGTTGGGGTTTTGCCTTCATATGTCACTGAAGAGCATGGCGTTTATTTCAATGGAGGCCTCTATTGGATCGGAGACGAGCTGAACCCACATGATTTTACTAATGTCATTTACCGTTTGGACATAGAAAATGAGAAATTGGAGACAATTTCATTTCCGCAAAATGGCGAAGTTATTTTTTTCCTTGGAGTTTTTGATGGCACCCTCTATCTAACTATTTCCACCGGCTTCATGAGGATGGACAAGTACCATGTGTGGAAGATGGAAGAAGATTTTTCATGGACTAAACAATTTGTTTTACCCAACCCAAAAGAATTGCGTCTTCCTAAGCATCCTCAACAACCTATTGGATCATGTCAACAACGTGTTATGATCTAA

Coding sequence (CDS)

ATGACAAATGAGTACATAAAATTTCCCCTAGAAAAATTGAAAGCACCTGGTGGTGGAACCTATAGCTACGGATTAGGATTCAGCCCTAAAACAAAGCAGTACAAAATAGCTCGAATATCCTCTGTACGTGATAAATCCTTGGTAGAGATTTTTAGATTCGGGACAAGTGGCGATTGGACCCCTGTTGGGGTTTTGCCTTCATATGTCACTGAAGAGCATGGCGTTTATTTCAATGGAGGCCTCTATTGGATCGGAGACGAGCTGAACCCACATGATTTTACTAATGTCATTTACCGTTTGGACATAGAAAATGAGAAATTGGAGACAATTTCATTTCCGCAAAATGGCGAAGTTATTTTTTTCCTTGGAGTTTTTGATGGCACCCTCTATCTAACTATTTCCACCGGCTTCATGAGGATGGACAAGTACCATGTGTGGAAGATGGAAGAAGATTTTTCATGGACTAAACAATTTGTTTTACCCAACCCAAAAGAATTGCGTCTTCCTAAGCATCCTCAACAACCTATTGGATCATGTCAACAACGTGTTATGATCTAA

Protein sequence

MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFTNVIYRLDIENEKLETISFPQNGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQPIGSCQQRVMI
Homology
BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match: A0A0A0KJY9 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.4e-51
Identity = 111/186 (59.68%), Postives = 132/186 (70.97%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
           MTNEY KFP EK K+    G  YSYGLGF+PKTKQYKIAR S   D+S  LVEIF FG++
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSFRPDESTTLVEIFTFGST 194

Query: 61  GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
              WTPVG LPS V E+HGVYF GGLYW+ ++ +PHD + + IYRLD+ENEKLE IS PQ
Sbjct: 195 HQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAIYRLDLENEKLEKISCPQ 254

Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
                FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+  P+ L  P HP Q
Sbjct: 255 YIGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISRPRNLCHPDHPHQ 314

BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match: A0A5D3CM94 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006720 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.2e-50
Identity = 110/186 (59.14%), Postives = 132/186 (70.97%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
           MTNEY KFP EK K+    G  YSYGLGF+PK KQYKIAR S   D+S  LVEIF FG++
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSFRPDESTTLVEIFAFGST 194

Query: 61  GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
              WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + + IYRLDIENE LE IS PQ
Sbjct: 195 YQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTIYRLDIENENLEKISCPQ 254

Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
           +    FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+ +P+ L  P HP Q
Sbjct: 255 HLGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQ 314

BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match: A0A1S3B0Q6 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103484583 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.6e-50
Identity = 110/186 (59.14%), Postives = 131/186 (70.43%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
           MTNEY KFP EK K+    G  YSYGLGF+PK KQYKIAR S   D+S  LVEIF FG+ 
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSFRPDESTTLVEIFAFGSI 194

Query: 61  GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
              WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + + IYRLDIENE LE IS PQ
Sbjct: 195 YQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTIYRLDIENENLEKISCPQ 254

Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
           +    FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+ +P+ L  P HP Q
Sbjct: 255 HLGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQ 314

BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match: A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 92/188 (48.94%), Postives = 124/188 (65.96%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWT 60
           +TNEY K P  +LK      Y YGLGFSPKT QYK+AR     ++ +V+IF FGTS +WT
Sbjct: 138 ITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHNEFIVDIFAFGTSCEWT 197

Query: 61  PVGVLPSYVTEEHGVYFNGGLYWIGDELN-PH----DFTNVIYRLDIENEKLETISFPQN 120
           P+G +P+++ E HGVYFNGGLYW+G +   P+    D+T V+YRLD+ +EK + IS P  
Sbjct: 198 PIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYRLDLNDEKFKKISIPFG 257

Query: 121 GEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQP 180
           G+   ++GV++GTLYLT+         YHVWKM+EDFSW+K+FVL  P+ +    H   P
Sbjct: 258 GDEP-YVGVYNGTLYLTLCCEDF---DYHVWKMKEDFSWSKEFVLALPENILHSLHRHHP 317

Query: 181 IGSCQQRV 184
           IG   Q V
Sbjct: 318 IGYYLQLV 321

BLAST of Lsi01G004000 vs. ExPASy TrEMBL
Match: A0A1S3BQV8 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 92/188 (48.94%), Postives = 124/188 (65.96%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWT 60
           +TNEY K P  +LK      Y YGLGFSPKT QYK+AR     ++ +V+IF FGTS +WT
Sbjct: 138 ITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHNEFIVDIFAFGTSCEWT 197

Query: 61  PVGVLPSYVTEEHGVYFNGGLYWIGDELN-PH----DFTNVIYRLDIENEKLETISFPQN 120
           P+G +P+++ E HGVYFNGGLYW+G +   P+    D+T V+YRLD+ +EK + IS P  
Sbjct: 198 PIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYRLDLNDEKFKKISIPFG 257

Query: 121 GEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQP 180
           G+   ++GV++GTLYLT+         YHVWKM+EDFSW+K+FVL  P+ +    H   P
Sbjct: 258 GDEP-YVGVYNGTLYLTLCCEDF---DYHVWKMKEDFSWSKEFVLALPENILHSLHRHHP 317

Query: 181 IGSCQQRV 184
           IG   Q V
Sbjct: 318 IGYYLQLV 321

BLAST of Lsi01G004000 vs. NCBI nr
Match: XP_038883771.1 (putative F-box protein At1g60370 [Benincasa hispida])

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-56
Identity = 121/191 (63.35%), Postives = 133/191 (69.63%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKSL--VEIFRFGTS 60
           MTNEY KFP EK K     G  YSYGLGFSP+TKQYKIAR S +RD+S   VEIF FGT+
Sbjct: 137 MTNEYFKFPAEKSKTHCCCGRPYSYGLGFSPETKQYKIARTSFLRDESTTSVEIFAFGTT 196

Query: 61  GDWTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFTNVIYRLDIENEKLETISFPQNG 120
            +WTPVGVLPS V E+HGVYFNGGLYW  DEL P D  N IYRLDIENEKLE IS P  G
Sbjct: 197 REWTPVGVLPSLVVEDHGVYFNGGLYWTVDELQPRDSNNAIYRLDIENEKLEKISCPHYG 256

Query: 121 EVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQ--- 180
              FF GVFDGTLYLT  TG +  + Y VWKMEE+ SW K FVL  P+ LR P+H Q   
Sbjct: 257 GGHFFFGVFDGTLYLTTYTGTVD-NIYQVWKMEENLSWIKAFVLSRPENLRHPEHDQPWG 316

BLAST of Lsi01G004000 vs. NCBI nr
Match: XP_004134745.1 (F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g07870 [Cucumis sativus] >XP_031743637.1 F-box protein At3g07870 [Cucumis sativus] >KGN49139.1 hypothetical protein Csa_003023 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 2.9e-51
Identity = 111/186 (59.68%), Postives = 132/186 (70.97%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
           MTNEY KFP EK K+    G  YSYGLGF+PKTKQYKIAR S   D+S  LVEIF FG++
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSFRPDESTTLVEIFTFGST 194

Query: 61  GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
              WTPVG LPS V E+HGVYF GGLYW+ ++ +PHD + + IYRLD+ENEKLE IS PQ
Sbjct: 195 HQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAIYRLDLENEKLEKISCPQ 254

Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
                FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+  P+ L  P HP Q
Sbjct: 255 YIGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISRPRNLCHPDHPHQ 314

BLAST of Lsi01G004000 vs. NCBI nr
Match: TYK13067.1 (putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-50
Identity = 110/186 (59.14%), Postives = 132/186 (70.97%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
           MTNEY KFP EK K+    G  YSYGLGF+PK KQYKIAR S   D+S  LVEIF FG++
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSFRPDESTTLVEIFAFGST 194

Query: 61  GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
              WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + + IYRLDIENE LE IS PQ
Sbjct: 195 YQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTIYRLDIENENLEKISCPQ 254

Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
           +    FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+ +P+ L  P HP Q
Sbjct: 255 HLGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQ 314

BLAST of Lsi01G004000 vs. NCBI nr
Match: XP_008439950.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 5.4e-50
Identity = 110/186 (59.14%), Postives = 131/186 (70.43%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAP--GGGTYSYGLGFSPKTKQYKIARISSVRDKS--LVEIFRFGTS 60
           MTNEY KFP EK K+    G  YSYGLGF+PK KQYKIAR S   D+S  LVEIF FG+ 
Sbjct: 135 MTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSFRPDESTTLVEIFAFGSI 194

Query: 61  GD-WTPVGVLPSYVTEEHGVYFNGGLYWIGDELNPHDFT-NVIYRLDIENEKLETISFPQ 120
              WT VG LPS V E+HGVYFNGGLYW+ ++ +PHD + + IYRLDIENE LE IS PQ
Sbjct: 195 YQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTIYRLDIENENLEKISCPQ 254

Query: 121 NGEVIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELRLPKHPQQ 180
           +    FF GVFDGTLYLT+S    + +KY VWKM+++FSW K FV+ +P+ L  P HP Q
Sbjct: 255 HLGGHFFFGVFDGTLYLTVS----KNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQ 314

BLAST of Lsi01G004000 vs. NCBI nr
Match: XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])

HSP 1 Score: 194.1 bits (492), Expect = 1.0e-45
Identity = 98/189 (51.85%), Postives = 129/189 (68.25%), Query Frame = 0

Query: 1   MTNEYIKFPLEKLKAPGGGTYSYGLGFSPKTKQYKIARISSVRDKSLVEIFRFGTSGDWT 60
           MTNEY K P  + K      Y YGLGFSP+TKQYK+AR   V  + +VEIF FGTS +WT
Sbjct: 139 MTNEYFKLPTFRSKGDSVKDYFYGLGFSPRTKQYKLARTHYVCHEFIVEIFAFGTSCEWT 198

Query: 61  PVGVLPSYVTEEHGVYFNGGLYWIGDELNPH-DFTNVIYRLDIENEKLETISFPQNGE-- 120
           PVG +P ++ E HGVYFNGGLYW+G +  P+   ++VIYRLD+E++K + ISFP +G+  
Sbjct: 199 PVGSVPYFLNEYHGVYFNGGLYWVGGQQLPNAGLSDVIYRLDLEDDKFKQISFPLDGDDE 258

Query: 121 -VIFFLGVFDGTLYLTISTGFMRMDKYHVWKMEEDFSWTKQFVLPNPKELR--LPKHPQQ 180
               ++GV++ TLYLT+  G     +YHVWKMEEDFSW K+FVL  P+ +   LP+H   
Sbjct: 259 GDFPYIGVYNDTLYLTLCCGDF---EYHVWKMEEDFSWIKEFVLALPENVHHSLPRH--H 318

Query: 181 PIGSCQQRV 184
           PIG C Q +
Sbjct: 319 PIGYCLQLI 322

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJY91.4e-5159.68F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 ... [more]
A0A5D3CM941.2e-5059.14Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A1S3B0Q62.6e-5059.14putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103484583 PE=4 SV... [more]
A0A5D3CIX91.1e-4348.94Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A1S3BQV81.1e-4348.94putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV... [more]
Match NameE-valueIdentityDescription
XP_038883771.11.7e-5663.35putative F-box protein At1g60370 [Benincasa hispida][more]
XP_004134745.12.9e-5159.68F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g0787... [more]
TYK13067.12.4e-5059.14putative F-box protein [Cucumis melo var. makuwa][more]
XP_008439950.15.4e-5059.14PREDICTED: putative F-box protein At3g21120 [Cucumis melo][more]
XP_038880514.11.0e-4551.85putative F-box protein At1g46984 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 10..176
e-value: 3.6E-17
score: 60.4
NoneNo IPR availablePANTHERPTHR47993OS09G0372900 PROTEIN-RELATEDcoord: 1..164
NoneNo IPR availablePANTHERPTHR47993:SF20F-BOX FAMILY PROTEINcoord: 1..164
IPR011043Galactose oxidase/kelch, beta-propellerSUPERFAMILY50965Galactose oxidase, central domaincoord: 21..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004000.1Lsi01G004000.1mRNA