Lsi01G003680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G003680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Octicosapeptide/Phox/Bem1p domain-containing family protein
Location	chr01: 3255036 .. 3255389 (+)
RNA-Seq Expression	Lsi01G003680
Synteny	Lsi01G003680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCATTCATCCCTCGGAGCTTGACTCCAACGCCACCGACTCAGTCGCGTCATCGCCGAGATCCGACCACCACTTTAACTTATCTAACGACCCACATGCTCGAGTTCGATTCATGTGCAGTTTCGGTGGCAATATCTTACCTCGACCGCACGATAATCAACTCCGATACGTCGGCGGCGAGACTCGCATTGTTGCTGTTCAACGCTCCACCACTTTCTCCCACTTCCTCGCCAAACTCGCTAAGATCACCGGCAAGTTTAACTCCGATTCTCTGTTTTTTCATTTGAGGGTTTGCGAATTCTTGATTCAAATAGGGGAATTGAATTTGCTTGTTTGTTTGATTATTTAG

mRNA sequence

ATGGCGTCCATTCATCCCTCGGAGCTTGACTCCAACGCCACCGACTCAGTCGCGTCATCGCCGAGATCCGACCACCACTTTAACTTATCTAACGACCCACATGCTCGAGTTCGATTCATGTGCAGTTTCGGTGGCAATATCTTACCTCGACCGCACGATAATCAACTCCGATACGTCGGCGGCGAGACTCGCATTGTTGCTGTTCAACGCTCCACCACTTTCTCCCACTTCCTCGCCAAACTCGCTAAGATCACCGGCAAGTTTAACTCCGATTCTCTGTTTTTTCATTTGAGGGTTTGCGAATTCTTGATTCAAATAGGGGAATTGAATTTGCTTGTTTGTTTGATTATTTAG

Coding sequence (CDS)

ATGGCGTCCATTCATCCCTCGGAGCTTGACTCCAACGCCACCGACTCAGTCGCGTCATCGCCGAGATCCGACCACCACTTTAACTTATCTAACGACCCACATGCTCGAGTTCGATTCATGTGCAGTTTCGGTGGCAATATCTTACCTCGACCGCACGATAATCAACTCCGATACGTCGGCGGCGAGACTCGCATTGTTGCTGTTCAACGCTCCACCACTTTCTCCCACTTCCTCGCCAAACTCGCTAAGATCACCGGCAAGTTTAACTCCGATTCTCTGTTTTTTCATTTGAGGGTTTGCGAATTCTTGATTCAAATAGGGGAATTGAATTTGCTTGTTTGTTTGATTATTTAG

Protein sequence

MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVGGETRIVAVQRSTTFSHFLAKLAKITGKFNSDSLFFHLRVCEFLIQIGELNLLVCLII

Homology

[Close]

BLAST of Lsi01G003680 vs. ExPASy TrEMBL
Match: A0A5D3CP14 (Octicosapeptide/Phox/Bem1p domain-containing family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007000 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.8e-44
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFNSDSLFF 96
          GETRIVAVQRSTTFSHFLAKLAKITGKFN D+  F
Sbjct: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFNFDARIF 95

[Close]

BLAST of Lsi01G003680 vs. ExPASy TrEMBL
Match: A0A1S3B0N7 (uncharacterized protein LOC103484567 OS=Cucumis melo OX=3656 GN=LOC103484567 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFN 90
          GETRIVAVQRSTTFSHFLAKLAKITG  N
Sbjct: 61 GETRIVAVQRSTTFSHFLAKLAKITGTIN 89

[Close]

BLAST of Lsi01G003680 vs. ExPASy TrEMBL
Match: A0A0A0KLC3 (PB1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516800 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.8e-41
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFN 90
          GETRIVAVQRSTTFSHFLAKLAKITG  N
Sbjct: 61 GETRIVAVQRSTTFSHFLAKLAKITGTIN 89

[Close]

BLAST of Lsi01G003680 vs. ExPASy TrEMBL
Match: A0A6J1KQD9 (uncharacterized protein LOC111496695 OS=Cucurbita maxima OX=3661 GN=LOC111496695 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.1e-41
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGG ILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGKILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFN 90
          GETRIVAVQRSTTFSHFLAKLAKITG  N
Sbjct: 61 GETRIVAVQRSTTFSHFLAKLAKITGTIN 89

[Close]

BLAST of Lsi01G003680 vs. ExPASy TrEMBL
Match: A0A6J1ELV4 (clathrin interactor EPSIN 3-like OS=Cucurbita moschata OX=3662 GN=LOC111433745 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.4e-40
Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGG ILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGKILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFN 90
          GETRIVAVQRST FSHFLAKLAKITG  N
Sbjct: 61 GETRIVAVQRSTAFSHFLAKLAKITGTIN 89

[Close]

BLAST of Lsi01G003680 vs. NCBI nr
Match: KAA0052731.1 (octicosapeptide/Phox/Bem1p domain-containing family protein [Cucumis melo var. makuwa] >TYK13092.1 octicosapeptide/Phox/Bem1p domain-containing family protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 1.8e-43
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFNSDSLFF 96
          GETRIVAVQRSTTFSHFLAKLAKITGKFN D+  F
Sbjct: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFNFDARIF 95

[Close]

BLAST of Lsi01G003680 vs. NCBI nr
Match: XP_038883339.1 (uncharacterized protein LOC120074323 [Benincasa hispida] >XP_038883340.1 uncharacterized protein LOC120074323 [Benincasa hispida])

HSP 1 Score: 178.3 bits (451), Expect = 3.8e-41
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFN 90
          GETRIVAVQRSTTFSHFLAKLAKITG  N
Sbjct: 61 GETRIVAVQRSTTFSHFLAKLAKITGTIN 89

[Close]

BLAST of Lsi01G003680 vs. NCBI nr
Match: XP_008439928.1 (PREDICTED: uncharacterized protein LOC103484567 [Cucumis melo] >XP_008439929.1 PREDICTED: uncharacterized protein LOC103484567 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 3.8e-41
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFN 90
          GETRIVAVQRSTTFSHFLAKLAKITG  N
Sbjct: 61 GETRIVAVQRSTTFSHFLAKLAKITGTIN 89

[Close]

BLAST of Lsi01G003680 vs. NCBI nr
Match: XP_004134739.1 (uncharacterized protein LOC101213084 [Cucumis sativus] >XP_004134740.1 uncharacterized protein LOC101213084 [Cucumis sativus] >XP_031742779.1 uncharacterized protein LOC101213084 [Cucumis sativus] >XP_031742780.1 uncharacterized protein LOC101213084 [Cucumis sativus] >KGN49172.1 hypothetical protein Csa_002731 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 3.8e-41
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGKFN 90
          GETRIVAVQRSTTFSHFLAKLAKITG  N
Sbjct: 61 GETRIVAVQRSTTFSHFLAKLAKITGTIN 89

[Close]

BLAST of Lsi01G003680 vs. NCBI nr
Match: KAG7026608.1 (hypothetical protein SDJN02_10610, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
          MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGG ILPRPHDNQLRYVG
Sbjct: 1  MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGKILPRPHDNQLRYVG 60

Query: 61 GETRIVAVQRSTTFSHFLAKLAKITGK 88
          GETRIVAVQRSTTFSHFLAKLAKITGK
Sbjct: 61 GETRIVAVQRSTTFSHFLAKLAKITGK 87

[Close]

BLAST of Lsi01G003680 vs. TAIR 10
Match: AT4G05150.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 100.9 bits (250), Expect = 7.1e-22
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1   MASIHPSELDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVG 60
           MASI P ELD+   DS+ASSPRS++      D   RVRFMC+FGG ILPRP DNQL YVG
Sbjct: 32  MASIPPPELDN---DSLASSPRSEY------DSQPRVRFMCTFGGRILPRPPDNQLCYVG 91

Query: 61  GETRIVAVQRSTTFSHFLAKLAKITGKFN 90
           G+ R+VAV R TTF+  L+KLAK++GK N
Sbjct: 92  GDNRMVAVHRHTTFASLLSKLAKLSGKSN 111

[Close]

BLAST of Lsi01G003680 vs. TAIR 10
Match: AT5G49920.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 35 ARVRFMCSFGGNILPRPHDNQLRYVGGETRIVAVQRSTTFSHFLAKLAKIT 86
          ++V+FMCSFGG ILPRP D+ L+YVGGETR+VAV    +FS  + KL  IT
Sbjct: 8  SKVKFMCSFGGRILPRPSDSVLKYVGGETRVVAVSPDISFSELMKKLTAIT 58

[Close]

BLAST of Lsi01G003680 vs. TAIR 10
Match: AT5G57610.1 (Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain )

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-12
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 9  LDSNATDSVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVGGETRIVAV 68
          +DS + +S  +S  S    +L+++PH RV+F+CSF G+ILPRP D +LRYVGGETRIV+V
Sbjct: 1  MDSGSVNSSVTSLVS----SLNDEPH-RVKFLCSFLGSILPRPQDGKLRYVGGETRIVSV 60

Query: 69 QRSTTFSHFLAKLAKI 85
           R   +   ++K+ ++
Sbjct: 61 NRDIRYEELMSKMREL 71

[Close]

BLAST of Lsi01G003680 vs. TAIR 10
Match: AT5G64430.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-12
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 15 DSVASSPRSDHHFNLSNDP------------HA-RVRFMCSFGGNILPRPHDNQLRYVGG 74
          DS  SSPRS       N P            H+ +V+FMCS+GG I PRPHDNQL YV G
Sbjct: 11 DSTDSSPRS-REIEFDNPPPPWDDQNQNQQQHSYKVKFMCSYGGKIQPRPHDNQLTYVNG 70

Query: 75 ETRIVAVQRSTTFSHFLAKLAKITG 87
          ET+I++V R   F    +KL+ + G
Sbjct: 71 ETKILSVDRGIRFPVLASKLSTVCG 94

[Close]

BLAST of Lsi01G003680 vs. TAIR 10
Match: AT2G35050.1 (Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain )

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-11
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 16  SVASSPRSDHHFNLSNDPHARVRFMCSFGGNILPRPHDNQLRYVGGETRIVAVQRSTTFS 75
           S+ SS  SD   N       R +F+CSFGG ++PRP D +LRYVGGETRI+ + ++ +F 
Sbjct: 163 SLVSSRASDSSLN-------RAKFLCSFGGKVIPRPRDQKLRYVGGETRIIRISKTISFQ 222

Query: 76  HFLAKLAKI 85
             + K+ +I
Sbjct: 223 ELMHKMKEI 224

The following BLAST results are available for this feature:

BLAST of Lsi01G003680 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G003680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CP14	8.8e-44	95.79	Octicosapeptide/Phox/Bem1p domain-containing family protein OS=Cucumis melo var....	[more]
A0A1S3B0N7	1.8e-41	97.75	uncharacterized protein LOC103484567 OS=Cucumis melo OX=3656 GN=LOC103484567 PE=...	[more]
A0A0A0KLC3	1.8e-41	97.75	PB1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516800 PE=4 SV...	[more]
A0A6J1KQD9	9.1e-41	96.63	uncharacterized protein LOC111496695 OS=Cucurbita maxima OX=3661 GN=LOC111496695...	[more]
A0A6J1ELV4	3.4e-40	95.51	clathrin interactor EPSIN 3-like OS=Cucurbita moschata OX=3662 GN=LOC111433745 P...	[more]

BLAST of Lsi01G003680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052731.1	1.8e-43	95.79	octicosapeptide/Phox/Bem1p domain-containing family protein [Cucumis melo var. m...	[more]
XP_038883339.1	3.8e-41	97.75	uncharacterized protein LOC120074323 [Benincasa hispida] >XP_038883340.1 unchara...	[more]
XP_008439928.1	3.8e-41	97.75	PREDICTED: uncharacterized protein LOC103484567 [Cucumis melo] >XP_008439929.1 P...	[more]
XP_004134739.1	3.8e-41	97.75	uncharacterized protein LOC101213084 [Cucumis sativus] >XP_004134740.1 uncharact...	[more]
KAG7026608.1	1.4e-40	98.85	hypothetical protein SDJN02_10610, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi01G003680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05150.1	7.1e-22	61.80	Octicosapeptide/Phox/Bem1p family protein	[more]
AT5G49920.1	1.3e-12	60.78	Octicosapeptide/Phox/Bem1p family protein	[more]
AT5G57610.1	3.0e-12	46.05	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain	[more]
AT5G64430.1	8.7e-12	44.71	Octicosapeptide/Phox/Bem1p family protein	[more]
AT2G35050.1	2.5e-11	43.48	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR31066:SF33	OCTICOSAPEPTIDE/PHOX/BEM1P	coord: 1..89
None	No IPR available	PANTHER	PTHR31066	OS05G0427100 PROTEIN-RELATED	coord: 1..89
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 52..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G003680.1	Lsi01G003680.1	mRNA