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Lsi01G003590 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAACCAAAATTATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTCGTACTTCCTTCCTTCCCTAGGCTTTTCATACTCATTCATTCTTATTATAGATATCGTGTTATGTTATGTTTGGAATTAAAAATCATAAAGAAAGAGGATTAAAAATGATTGATTCTTGATTTTGTGAATTAATTTTGTGAGTTTGGAAGTGCAGGTGGTACTATTAAGCCAGAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTC AAACCAAAATTATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTCGTGGTACTATTAAGCCAGAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTC ATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTCGTGGTACTATTAAGCCAGAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTC MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL Homology
BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18 Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0
BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 3.2e-18 Identity = 55/78 (70.51%), Postives = 59/78 (75.64%), Query Frame = 0
BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 8.8e-16 Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 0
BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A6N2B813 (LysM domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016167 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0
BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A2Z7A4L5 (LysM domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_26162 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10 Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 0
BLAST of Lsi01G003590 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus]) HSP 1 Score: 101.7 bits (252), Expect = 3.0e-18 Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0
BLAST of Lsi01G003590 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus]) HSP 1 Score: 100.9 bits (250), Expect = 5.1e-18 Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 0
BLAST of Lsi01G003590 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]) HSP 1 Score: 100.5 bits (249), Expect = 6.7e-18 Identity = 55/78 (70.51%), Postives = 59/78 (75.64%), Query Frame = 0
BLAST of Lsi01G003590 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus]) HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15 Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 0
BLAST of Lsi01G003590 vs. NCBI nr
Match: TMW90128.1 (hypothetical protein EJD97_016167 [Solanum chilense]) HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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