Lsi01G003590 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G003590
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLysM domain-containing protein
Locationchr01: 3192840 .. 3193238 (-)
RNA-Seq ExpressionLsi01G003590
SyntenyLsi01G003590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCAAAATTATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTCGTACTTCCTTCCTTCCCTAGGCTTTTCATACTCATTCATTCTTATTATAGATATCGTGTTATGTTATGTTTGGAATTAAAAATCATAAAGAAAGAGGATTAAAAATGATTGATTCTTGATTTTGTGAATTAATTTTGTGAGTTTGGAAGTGCAGGTGGTACTATTAAGCCAGAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTC

mRNA sequence

AAACCAAAATTATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTCGTGGTACTATTAAGCCAGAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTC

Coding sequence (CDS)

ATGGCGAAGGCTATTACTTCAATTGCCATCTTCCTATTGGCTCTCTCTCTTCTCATTTTTTCAATTGCTGTGGAAGGTCGTGGTACTATTAAGCCAGAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTATTGCAGTAAAGAGTGGAGACACCTGCTTTGATCTTGCCCAGACATTCAAGCTCTCCACTGTTGAATTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTC

Protein sequence

MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFKLSTVEFNFINPNLNCSAL
Homology
BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-18
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MAKAITSIAIFLLALSLLIFSIAVEGRG----TIKPEARLELQCNRVIAVKSGDTCFDLA 60
          MAKA  SIAIFLLA SLLIF+I+V+GR      +  EA LELQCN+   VKSGDTCF +A
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QTFKLSTVEFNFINPNLNCSAL 79
          Q FKL+T  F+FINPNLNCSAL
Sbjct: 61 QAFKLTTDHFDFINPNLNCSAL 82

BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-18
Identity = 55/78 (70.51%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 1  MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFK 60
          MAKA   IAIFLLA  LLIFSI+V+G   +  E  LELQCN+   VKSGDTCF LA TFK
Sbjct: 1  MAKATIPIAIFLLAFFLLIFSISVKGE-VVAAEPSLELQCNKAYGVKSGDTCFALAHTFK 60

Query: 61 LSTVEFNFINPNLNCSAL 79
          LST  FNFINPNLNCSAL
Sbjct: 61 LSTDHFNFINPNLNCSAL 77

BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.8e-16
Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 1  MAKAI--TSIAIFLLALSLLIFSIAVEGRGTI---KPEARLELQCNRVIAVKSGDTCFDL 60
          MAKA+  +S  IFLLA SLLIFSI+VE R T      EA LELQCN+V  VK+GDTCFDL
Sbjct: 1  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDL 60

Query: 61 AQTFKLSTVEFNFINPNLNCSAL 79
           Q FK++T  F+FINPNLNC+ L
Sbjct: 61 EQKFKITTPHFSFINPNLNCTDL 83

BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A6N2B813 (LysM domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016167 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 1  MAKAITSIAIFLLALSLLIFSIAVEGRGTI--------KPEARLELQCNRVIAVKSGDTC 60
          MAK    +  F+L LSLL+F   VE + TI         P    E++C++V+ VK GDTC
Sbjct: 1  MAKPNNRVLSFILILSLLLFITLVESKFTIHEGSSLSPSPSPPSEIECSKVVNVKDGDTC 60

Query: 61 FDLAQTFKLSTVEFNFINPNLNCSAL 79
          FD++ TF L   EFN INPNLNC+AL
Sbjct: 61 FDVSHTFGLGGDEFNAINPNLNCTAL 86

BLAST of Lsi01G003590 vs. ExPASy TrEMBL
Match: A0A2Z7A4L5 (LysM domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_26162 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 1  MAKAITSIAI---FLLALSLLIFSIAVEGRGTI--KPEARLELQCNRVIAVKSGDTCFDL 60
          MAKA  + +I   F L LSL++ +   E R TI  K +A + L CN V AV  GDTCFD+
Sbjct: 1  MAKASNNTSIILNFALVLSLILITTIAESRVTISAKSKASVTLVCNSVTAVNKGDTCFDI 60

Query: 61 AQTFKLSTVEFNFINPNLNCSAL 79
          A++F L+T EF+ INPN+NC AL
Sbjct: 61 AKSFNLTTAEFHAINPNVNCDAL 83

BLAST of Lsi01G003590 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.0e-18
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 1  MAKAITSIAIFLLALSLLIFSIAVEGRG----TIKPEARLELQCNRVIAVKSGDTCFDLA 60
          MAKA  SIAIFLLA SLLIF+I+V+GR      +  EA LELQCN+   VKSGDTCF +A
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QTFKLSTVEFNFINPNLNCSAL 79
          Q FKL+T  F+FINPNLNCSAL
Sbjct: 61 QAFKLTTDHFDFINPNLNCSAL 82

BLAST of Lsi01G003590 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 5.1e-18
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 0

Query: 1  MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFK 60
          MAKA  SIAIFLLA SLLIF+I+V+G   ++ EA LELQCN+   VKSGDTCF +AQ FK
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKGEVVVE-EASLELQCNKAYGVKSGDTCFAIAQAFK 60

Query: 61 LSTVEFNFINPNLNCSAL 79
          L+T  F+FINPNLNCSAL
Sbjct: 61 LTTDHFDFINPNLNCSAL 77

BLAST of Lsi01G003590 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 6.7e-18
Identity = 55/78 (70.51%), Postives = 59/78 (75.64%), Query Frame = 0

Query: 1  MAKAITSIAIFLLALSLLIFSIAVEGRGTIKPEARLELQCNRVIAVKSGDTCFDLAQTFK 60
          MAKA   IAIFLLA  LLIFSI+V+G   +  E  LELQCN+   VKSGDTCF LA TFK
Sbjct: 1  MAKATIPIAIFLLAFFLLIFSISVKGE-VVAAEPSLELQCNKAYGVKSGDTCFALAHTFK 60

Query: 61 LSTVEFNFINPNLNCSAL 79
          LST  FNFINPNLNCSAL
Sbjct: 61 LSTDHFNFINPNLNCSAL 77

BLAST of Lsi01G003590 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 1  MAKAI--TSIAIFLLALSLLIFSIAVEGRGTI---KPEARLELQCNRVIAVKSGDTCFDL 60
          MAKA+  +S  IFLLA SLLIFSI+VE R T      EA LELQCN+V  VK+GDTCFDL
Sbjct: 1  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDL 60

Query: 61 AQTFKLSTVEFNFINPNLNCSAL 79
           Q FK++T  F+FINPNLNC+ L
Sbjct: 61 EQKFKITTPHFSFINPNLNCTDL 83

BLAST of Lsi01G003590 vs. NCBI nr
Match: TMW90128.1 (hypothetical protein EJD97_016167 [Solanum chilense])

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 1  MAKAITSIAIFLLALSLLIFSIAVEGRGTI--------KPEARLELQCNRVIAVKSGDTC 60
          MAK    +  F+L LSLL+F   VE + TI         P    E++C++V+ VK GDTC
Sbjct: 1  MAKPNNRVLSFILILSLLLFITLVESKFTIHEGSSLSPSPSPPSEIECSKVVNVKDGDTC 60

Query: 61 FDLAQTFKLSTVEFNFINPNLNCSAL 79
          FD++ TF L   EFN INPNLNC+AL
Sbjct: 61 FDVSHTFGLGGDEFNAINPNLNCTAL 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLD21.4e-1867.07LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 S... [more]
A0A1S4DTB43.2e-1870.51lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC1079... [more]
A0A0A0KHZ88.8e-1663.86LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 S... [more]
A0A6N2B8131.5e-1047.67LysM domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016167 PE=4 ... [more]
A0A2Z7A4L51.9e-1050.60LysM domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_261... [more]
Match NameE-valueIdentityDescription
KGN49182.13.0e-1867.07hypothetical protein Csa_004378 [Cucumis sativus][more]
XP_031742455.15.1e-1869.23lysM domain-containing protein ARB_00327-like [Cucumis sativus][more]
XP_016899229.16.7e-1870.51PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo][more]
KGN49183.11.8e-1563.86hypothetical protein Csa_003390 [Cucumis sativus][more]
TMW90128.13.0e-1047.67hypothetical protein EJD97_016167 [Solanum chilense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 40..78
e-value: 6.3E-10
score: 41.0
NoneNo IPR availablePANTHERPTHR34997AM15coord: 1..78
NoneNo IPR availablePANTHERPTHR34997:SF13LYSM DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..78
IPR018392LysM domainPROSITEPS51782LYSMcoord: 42..78
score: 9.048049
IPR018392LysM domainCDDcd00118LysMcoord: 46..78
e-value: 1.16926E-4
score: 33.9981

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G003590.1Lsi01G003590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane