Lsi01G003580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G003580
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLysM domain-containing protein
Locationchr01: 3186190 .. 3188279 (-)
RNA-Seq ExpressionLsi01G003580
SyntenyLsi01G003580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGGTTTGTAATGACTAAGTACTTAAGATTGTTGTGTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTACTTTATTAAAGTCATTCTAAATAGAGCGTTACTCTTATTTCTCACATTATTACGTATTAACTATGCTCTCATTCCCACATTCAATTTTTGAATGCTTTATGTTTCGTCCGTCACAACCACTTTGGTTCAAATTTTGGAAATATAAAAACAATTTATATATCATAAATTTTGGGTAGTATGATACCTTCATTCATTTGTTTGTCACAAAAGCAACATTTAAGAATTATATATGGTCTATGAAATAAATGAGTAACAAATCAATAAATTATTTAATAACGTGTTAAATAATGAATGAGAGGAGTAGATACTACAATAGTACTAGATATTTTTTTGGATCCTAAACTAATGATATTGTATCAATTAAACTTTAAACTTATATAAGTGAATAAATTCACACCTTCCTTCCATTTAGAATTTTGTTTTAAGATTGTTAATACACAACTCCCACATATATATTAGACTTCTATAAAAAAAATATAGAAATTGACATCATATTTGAAAGAAATGCTAAAATCAAAGAAATAGTAGTGGGCTTTTTACTAATATGCATGCTTTTTCATTATTTTGAATTCCTGCGGGCTTATTTAGAAAGAATTACATGATATGTGGAGGTTTTTTTAGGGATTTTTTTTTATAATAAAACTAAGTGAAAATAGTTATAAATCAAATGGTCTAAGGGTTTGTTTGGAATGATTTTAGGAAAAAAAAAATGTTTTTCAAAAGTTTATTTTTATTTAAACACTTGATAAAAACTAACATGTGTTTGACTTTTTTTTCAAAAAGTGTTTATATATATATATATATATATATAATTTGTTTGATTTATTATTAAAAGTGTTTTTATTAATGTGAAATTACTATAACGATCATAAAATACTATTAACTTTTAATTTAAAATAATGGTCCTCGGAGTTGATCATATGGGTTGCTCGCTGGAGTTAGTTACTGTTGGTGGTGGTTGGAGTTGGTCAACGATGGTTGCCAGAGGTTGTGACCGGAGTTTACTAGTAGTGGTAGTTGATAGTGGTAGCCAGATTTGACTAGAGGTGGCCACCGATAGTGGTTGCCAGAAAATGGCCGCCAGAGTTGTTTGTTAGTAATGCTTGCCGGAGTAGGTTGTCGGTGGTGGTCTCCAAACGTGGCCAGCGGAGGGCGATGGTAGCCATGACTCATAACAACATAGTGGAAGCGAGAAATTAGGGAGAAATTAACCATTAAACACTCATAATTCATTTTTCTAAAAGTTGGTTTCAAATGTTTATCCTAAACTAACTTATTTTATAAACTTATTTTTTCAAAATTCATATTAAGTGGTTGCCAAACACTTTAAATTAAACACTTGAAAAGGTATTTTAAACACAACTCTAAATGATTAAAGTTTAAGGTTTAAATTACTAAATCCCAAAAAGCTTAAGAGTATAAATTGATTTAGTTCCTGAAATTTATGGAAGAAACTAAAGTAAAACAACCATCTTGAATTCGAGAAAGAGTATTAGAAATGGTTCATTATTCATTTCCAGTTGAATTAATATGGAGTTTGTGAGTTAATTTTGTGAGTTATTGAAAGTGCAGGTGGGGTTGCTGAGGCAGAAGCAGGCTTGGAGTTAGAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGGCCAGACATTCAAGATCTCCACTGAACACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTTTTTATTGGCCAGTGGCTCTGTCTCAATGCCTTCCTTACCATTCCTTAG

mRNA sequence

ATGTTCGGTGGGGTTGCTGAGGCAGAAGCAGGCTTGGAGTTAGAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGGCCAGACATTCAAGATCTCCACTGAACACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTTTTTATTGGCCAGTGGCTCTGTCTCAATGCCTTCCTTACCATTCCTTAG

Coding sequence (CDS)

ATGTTCGGTGGGGTTGCTGAGGCAGAAGCAGGCTTGGAGTTAGAATGCAACAAAGTTTATGGAGTAAAAAATGGAGACACTTGCTTTGATCTTGGCCAGACATTCAAGATCTCCACTGAACACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTTTTTATTGGCCAGTGGCTCTGTCTCAATGCCTTCCTTACCATTCCTTAG

Protein sequence

MFGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLTIP
Homology
[Close]
BLAST of Lsi01G003580 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-23
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 3  GGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCL 62
          G V  AE  LEL+CNK YGVK+GDTCF L  TFK+ST+HFNFINPNLNCSALF+GQWLC+
Sbjct: 26 GEVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCV 85

Query: 63 NAFLT 68
          NAFLT
Sbjct: 86 NAFLT 90

[Close]
BLAST of Lsi01G003580 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 2  FGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLC 61
          F GV   EAGLEL+CNKVYGVKNGDTCFDL Q FKI+T HF+FINPNLNC+ LFIGQWLC
Sbjct: 33 FRGV--VEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLC 92

Query: 62 LNAFLTIP 70
          L+A L +P
Sbjct: 93 LDAVLILP 98

[Close]
BLAST of Lsi01G003580 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.7e-21
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0 

Query: 1  MFGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWL 60
          +F  V   EA LEL+CNK YGVK+GDTCF + Q FK++T+HF+FINPNLNCSALF+ QWL
Sbjct: 29 LFREVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWL 88

Query: 61 CLNAFLT 68
          C+NAFLT
Sbjct: 89 CVNAFLT 95

[Close]
BLAST of Lsi01G003580 vs. ExPASy TrEMBL
Match: A0A314YKP2 (LysM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_28323 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 14 LECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT 68
          L+C  VYGVK+GDTCF++ +TF + TE F+ INPNLNC+ALF+GQW+CLN  L+
Sbjct: 35 LKCESVYGVKSGDTCFEIAETFNVPTEFFDSINPNLNCTALFVGQWVCLNGTLS 88

[Close]
BLAST of Lsi01G003580 vs. ExPASy TrEMBL
Match: M5WNV7 (LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021979mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 14 LECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT 68
          L+C  VYGVK+GDTCF + QTF + TE F+ INPNLNC+ALF+GQW+CLN  L+
Sbjct: 35 LKCESVYGVKSGDTCFTIAQTFSLPTEFFDSINPNLNCAALFVGQWVCLNGTLS 88

[Close]
BLAST of Lsi01G003580 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 3  GGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCL 62
          G V  AE  LEL+CNK YGVK+GDTCF L  TFK+ST+HFNFINPNLNCSALF+GQWLC+
Sbjct: 26 GEVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKLSTDHFNFINPNLNCSALFVGQWLCV 85

Query: 63 NAFLT 68
          NAFLT
Sbjct: 86 NAFLT 90

[Close]
BLAST of Lsi01G003580 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 8.8e-22
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 2  FGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLC 61
          F GV   EAGLEL+CNKVYGVKNGDTCFDL Q FKI+T HF+FINPNLNC+ LFIGQWLC
Sbjct: 33 FRGV--VEAGLELQCNKVYGVKNGDTCFDLEQKFKITTPHFSFINPNLNCTDLFIGQWLC 92

Query: 62 LNAFLTIP 70
          L+A L +P
Sbjct: 93 LDAVLILP 98

[Close]
BLAST of Lsi01G003580 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 9.7e-21
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0 

Query: 1  MFGGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWL 60
          +F  V   EA LEL+CNK YGVK+GDTCF + Q FK++T+HF+FINPNLNCSALF+ QWL
Sbjct: 29 LFREVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWL 88

Query: 61 CLNAFLT 68
          C+NAFLT
Sbjct: 89 CVNAFLT 95

[Close]
BLAST of Lsi01G003580 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 0 

Query: 3  GGVAEAEAGLELECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCL 62
          G V   EA LEL+CNK YGVK+GDTCF + Q FK++T+HF+FINPNLNCSALF+ QWLC+
Sbjct: 26 GEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCV 85

Query: 63 NAFLT 68
          NAFLT
Sbjct: 86 NAFLT 90

[Close]
BLAST of Lsi01G003580 vs. NCBI nr
Match: PQQ05751.1 (hypothetical protein Pyn_28323 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 87.4 bits (215), Expect = 5.2e-14
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 14 LECNKVYGVKNGDTCFDLGQTFKISTEHFNFINPNLNCSALFIGQWLCLNAFLT 68
          L+C  VYGVK+GDTCF++ +TF + TE F+ INPNLNC+ALF+GQW+CLN  L+
Sbjct: 35 LKCESVYGVKSGDTCFEIAETFNVPTEFFDSINPNLNCTALFVGQWVCLNGTLS 88

The following BLAST results are available for this feature:
BLAST of Lsi01G003580 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G003580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DTB46.6e-2376.92lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC1079... [more]
A0A0A0KHZ84.3e-2276.47LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 S... [more]
A0A0A0KLD24.7e-2168.66LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 S... [more]
A0A314YKP22.5e-1462.96LysM domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=... [more]
M5WNV73.3e-1464.81LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021979mg PE... [more]
BLAST of Lsi01G003580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899229.11.4e-2276.92PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo][more]
KGN49183.18.8e-2276.47hypothetical protein Csa_003390 [Cucumis sativus][more]
KGN49182.19.7e-2168.66hypothetical protein Csa_004378 [Cucumis sativus][more]
XP_031742455.11.3e-2070.77lysM domain-containing protein ARB_00327-like [Cucumis sativus][more]
PQQ05751.15.2e-1462.96hypothetical protein Pyn_28323 [Prunus yedoensis var. nudiflora][more]
BLAST of Lsi01G003580 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainSMARTSM00257LysM_2coord: 19..63
e-value: 6.7E-4
score: 29.0
IPR018392LysM domainPFAMPF01476LysMcoord: 20..62
e-value: 1.7E-6
score: 28.0
IPR018392LysM domainPROSITEPS51782LYSMcoord: 18..62
score: 11.914322
IPR018392LysM domainCDDcd00118LysMcoord: 18..62
e-value: 1.95995E-7
score: 40.9317
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 16..62
e-value: 5.5E-15
score: 57.2
IPR036779LysM domain superfamilySUPERFAMILY54106LysM domaincoord: 16..62
NoneNo IPR availablePANTHERPTHR34997:SF13LYSM DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 9..66
NoneNo IPR availablePANTHERPTHR34997AM15coord: 9..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G003580.1Lsi01G003580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds