Lsi01G003360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G003360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	dof zinc finger protein DOF1.4-like
Location	chr01: 2936307 .. 2937113 (+)
RNA-Seq Expression	Lsi01G003360
Synteny	Lsi01G003360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGAGTTCAAAACAGGTTTCGATCGATGGATTTGATTGGAGCAAGGCGCTAATGCAAGCACAGAAACTGGAGCTTCCAAAATTGGCTCCAAGCTCCGGCGTGAAACGATCACAGCATCAAAATCAGAATCAAATTCAGCAACAGATAGAGCAATTGAAGTGCCCCAGATGCGACTCAACCAACACAAAATTCTGCTACTACAACAATTATAACAAATCTCAGCCTCGCCATTTTTGCAGAGCTTGTAAACGCCACTGGACCAAAGGTGGAACTCTACGAAACGTCCCTGTTGGTGGCGGCCGTAAAAACAAGCGCCTAAAAAAAAAGCCAAACCCCAACTCCACAAAATCTTCCTCCTCCGCCGCCGCTGCCGCGGCCTCCACCGCCGCCGACGTTATCAATCCCCAACTGGACGTTCATCATTTTCAAAACCTTCCTCTGTATCAGGGGCAGATTTTTCCCCCGCCGTCGTCCAGCAATTGGGCGGAATGCGAAAATTTCACCACAAATTACGGGATTTTAAATTCCCAAAACCCCGATTTCTCGGCAGTTTCAACAACCACCTCAACGCATTCTCCCATTTCCCCAAAATTTAATAATTATTCTGATCAAGAATTGAAACCCACAAAAACAGAGCAACCGGCCAACAGCACCAGTACTCATCATCCATGGCAGCTTCCATCCACCGGCTGCGGCGTCACCGACATGTCGAGCAGCTACTGGAGCTGGGACGACATCAACACCTTCGCCGCAACCGATCTCAACATCGCATGGGACGACGACCATGACATCAAACCTTGA

mRNA sequence

ATGGGTTTGAGTTCAAAACAGGTTTCGATCGATGGATTTGATTGGAGCAAGGCGCTAATGCAAGCACAGAAACTGGAGCTTCCAAAATTGGCTCCAAGCTCCGGCGTGAAACGATCACAGCATCAAAATCAGAATCAAATTCAGCAACAGATAGAGCAATTGAAGTGCCCCAGATGCGACTCAACCAACACAAAATTCTGCTACTACAACAATTATAACAAATCTCAGCCTCGCCATTTTTGCAGAGCTTGTAAACGCCACTGGACCAAAGGTGGAACTCTACGAAACGTCCCTGTTGGTGGCGGCCGTAAAAACAAGCGCCTAAAAAAAAAGCCAAACCCCAACTCCACAAAATCTTCCTCCTCCGCCGCCGCTGCCGCGGCCTCCACCGCCGCCGACGTTATCAATCCCCAACTGGACGTTCATCATTTTCAAAACCTTCCTCTGTATCAGGGGCAGATTTTTCCCCCGCCGTCGTCCAGCAATTGGGCGGAATGCGAAAATTTCACCACAAATTACGGGATTTTAAATTCCCAAAACCCCGATTTCTCGGCAGTTTCAACAACCACCTCAACGCATTCTCCCATTTCCCCAAAATTTAATAATTATTCTGATCAAGAATTGAAACCCACAAAAACAGAGCAACCGGCCAACAGCACCAGTACTCATCATCCATGGCAGCTTCCATCCACCGGCTGCGGCGTCACCGACATGTCGAGCAGCTACTGGAGCTGGGACGACATCAACACCTTCGCCGCAACCGATCTCAACATCGCATGGGACGACGACCATGACATCAAACCTTGA

Coding sequence (CDS)

ATGGGTTTGAGTTCAAAACAGGTTTCGATCGATGGATTTGATTGGAGCAAGGCGCTAATGCAAGCACAGAAACTGGAGCTTCCAAAATTGGCTCCAAGCTCCGGCGTGAAACGATCACAGCATCAAAATCAGAATCAAATTCAGCAACAGATAGAGCAATTGAAGTGCCCCAGATGCGACTCAACCAACACAAAATTCTGCTACTACAACAATTATAACAAATCTCAGCCTCGCCATTTTTGCAGAGCTTGTAAACGCCACTGGACCAAAGGTGGAACTCTACGAAACGTCCCTGTTGGTGGCGGCCGTAAAAACAAGCGCCTAAAAAAAAAGCCAAACCCCAACTCCACAAAATCTTCCTCCTCCGCCGCCGCTGCCGCGGCCTCCACCGCCGCCGACGTTATCAATCCCCAACTGGACGTTCATCATTTTCAAAACCTTCCTCTGTATCAGGGGCAGATTTTTCCCCCGCCGTCGTCCAGCAATTGGGCGGAATGCGAAAATTTCACCACAAATTACGGGATTTTAAATTCCCAAAACCCCGATTTCTCGGCAGTTTCAACAACCACCTCAACGCATTCTCCCATTTCCCCAAAATTTAATAATTATTCTGATCAAGAATTGAAACCCACAAAAACAGAGCAACCGGCCAACAGCACCAGTACTCATCATCCATGGCAGCTTCCATCCACCGGCTGCGGCGTCACCGACATGTCGAGCAGCTACTGGAGCTGGGACGACATCAACACCTTCGCCGCAACCGATCTCAACATCGCATGGGACGACGACCATGACATCAAACCTTGA

Protein sequence

MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSSSSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSSSNWAECENFTTNYGILNSQNPDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTGCGVTDMSSSYWSWDDINTFAATDLNIAWDDDHDIKP

Homology

[Close]

BLAST of Lsi01G003360 vs. ExPASy Swiss-Prot
Match: Q9FZA4 (Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana OX=3702 GN=DOF1.4 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.6e-27
Identity = 76/170 (44.71%), Postives = 107/170 (62.94%), Query Frame = 0


Query: 40  QHQNQNQIQQQIEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPV 99
           Q Q Q Q QQ   QLKCPRCDS+NTKFCYYNNY+ SQPRHFC+ACKR+WT+GGTLRNVPV
Sbjct: 13  QQQQQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPV 72

Query: 100 GGG-RKNKRLKKKPNPNSTKSSSSAAAAAASTAADVINPQLDVHHFQNL---PLYQGQIF 159
           GG  RKNKR+K+     ST ++++A+  + + ++   NP   + HF ++   PL+ G   
Sbjct: 73  GGSYRKNKRVKRP----STATTTTASTVSTTNSSSPNNPH-QISHFSSMNHHPLFYG--- 132

Query: 160 PPPSSSNWAECENFTTNYGILNSQNPDFSAVSTTTSTHSP-ISPKFNNYS 205
               S + + C N   N  ++ S+  D S   +++   S  +S  F++ S
Sbjct: 133 ---LSDHMSSCNN---NLPMIPSRFSDSSKTCSSSGLESEFLSSGFSSLS 168

[Close]

BLAST of Lsi01G003360 vs. ExPASy Swiss-Prot
Match: Q94AR6 (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 2.6e-24
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 38  RSQHQNQNQIQQQIEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNV 97
           + Q Q Q Q  +Q EQLKCPRCDS NTKFCYYNNYN SQPRHFC++C+R+WTKGG LRNV
Sbjct: 14  KQQQQQQPQFAEQ-EQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNV 73

Query: 98  PVGGGRKNKRLKKKPNPNSTKSSSSAAAAAAST 131
           PVGGG +    K+     ST SSSSA++ + S+
Sbjct: 74  PVGGGSRKNATKR-----STSSSSSASSPSNSS 100

[Close]

BLAST of Lsi01G003360 vs. ExPASy Swiss-Prot
Match: O80928 (Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana OX=3702 GN=DOF2.4 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 54  LKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGG-RKNKRLKKKP 113
           LKCPRC+STNTKFCY+NNY+ +QPRHFC+ C+R+WT+GG LRNVPVGGG R+N+R K   
Sbjct: 89  LKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTKSNS 148

Query: 114 NPNSTKSSSSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSSSN 163
           N N+  +++S   + +S  A  I+  L  H+  N      QI  P    N
Sbjct: 149 NNNNNSTATSNNTSFSSGNASTISTILSSHYGGNQESILSQILSPARLMN 198

[Close]

BLAST of Lsi01G003360 vs. ExPASy Swiss-Prot
Match: B9F1L8 (Dof zinc finger protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF2 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.9e-23
Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 49  QQIEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGG-RKNKR 108
           Q+ + L CPRC+STNTKFCYYNNY+  QPR+FC+ C+R+WT+GG+LRNVPVGGG RKNKR
Sbjct: 75  QKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKR 134

Query: 109 LKKKPNPNSTKSSSSAAAAAASTAADVI--NPQLDVHHFQNL----PLYQGQIFPPPSSS 168
                 P++  S+S++AA + S    +   NP+L     Q+L    P + G+   PP  +
Sbjct: 135 SSSSVVPSAAASASTSAAVSGSVPVGLAAKNPKLMHEGAQDLNLAFPHHHGRALQPPEFT 194

[Close]

BLAST of Lsi01G003360 vs. ExPASy Swiss-Prot
Match: O24463 (Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.8e-23
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 52  EQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGG-RKNKRLKK 111
           E LKCPRCDS NTKFCYYNNY+ SQPR+FC+AC+R+WT GGTLRNVP+GGG RKNK   +
Sbjct: 58  EALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKNKHASR 117

Query: 112 KPNPNSTKSSSSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSS 161
               + T SSSSA  A  S + +  +  + ++  +++ +      P P++
Sbjct: 118 FVLGSHTSSSSSATYAPLSPSTNASSSNMSIN--KHMMMVPNMTMPTPTT 165

[Close]

BLAST of Lsi01G003360 vs. ExPASy TrEMBL
Match: A0A5D3CPL5 (Dof zinc finger protein DOF1.4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007280 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.5e-136
Identity = 244/268 (91.04%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQ QIEQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKP  NS KSS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPTTNSKKSS 120

Query: 121 SSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSSSNWAECENFTTNYGILNSQN 180
           SS AA A   AAD+INPQ+DVHHFQNLPLYQG IF PPSSSNWAECENFTTNYGILNSQN
Sbjct: 121 SSTAATA---AADLINPQMDVHHFQNLPLYQGLIFSPPSSSNWAECENFTTNYGILNSQN 180

Query: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTGCGVTDMSS 240
           PDFSAVSTTTSTHSPISPKFNNYSDQELKPT+TEQP     THHPWQLPSTGCG+ DMSS
Sbjct: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTETEQP-----THHPWQLPSTGCGIGDMSS 240

Query: 241 SYWSWDDINTFAATDLNIAWDDDHDIKP 269
           SYWSWDDINTF ATDLNI WDD+HDIKP
Sbjct: 241 SYWSWDDINTFTATDLNIPWDDEHDIKP 260

[Close]

BLAST of Lsi01G003360 vs. ExPASy TrEMBL
Match: A0A1S3AZE8 (dof zinc finger protein DOF1.4-like OS=Cucumis melo OX=3656 GN=LOC103484541 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.5e-136
Identity = 244/268 (91.04%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQ QIEQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKP  NS KSS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPTTNSKKSS 120

Query: 121 SSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSSSNWAECENFTTNYGILNSQN 180
           SS AA A   AAD+INPQ+DVHHFQNLPLYQG IF PPSSSNWAECENFTTNYGILNSQN
Sbjct: 121 SSTAATA---AADLINPQMDVHHFQNLPLYQGLIFSPPSSSNWAECENFTTNYGILNSQN 180

Query: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTGCGVTDMSS 240
           PDFSAVSTTTSTHSPISPKFNNYSDQELKPT+TEQP     THHPWQLPSTGCG+ DMSS
Sbjct: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTETEQP-----THHPWQLPSTGCGIGDMSS 240

Query: 241 SYWSWDDINTFAATDLNIAWDDDHDIKP 269
           SYWSWDDINTF ATDLNI WDD+HDIKP
Sbjct: 241 SYWSWDDINTFTATDLNIPWDDEHDIKP 260

[Close]

BLAST of Lsi01G003360 vs. ExPASy TrEMBL
Match: A0A0A0KLF4 (Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517150 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.4e-134
Identity = 240/268 (89.55%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQ QIQ QIEQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQIQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKP  NS KSS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPTTNSKKSS 120

Query: 121 SSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSSSNWAECENFTTNYGILNSQN 180
           SS    AA+TAAD+INPQ+DVHHFQNLPLYQG IF PPSSSNWAECENFTTNYGILNSQN
Sbjct: 121 SS---TAATTAADLINPQMDVHHFQNLPLYQGLIFSPPSSSNWAECENFTTNYGILNSQN 180

Query: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTGCGVTDMSS 240
           PDFSAVSTTTSTHSPISPKFNNYSD+ELKPT+TEQP     THHPWQLPSTGCG+ DMS+
Sbjct: 181 PDFSAVSTTTSTHSPISPKFNNYSDKELKPTETEQP-----THHPWQLPSTGCGIGDMSN 240

Query: 241 SYWSWDDINTFAATDLNIAWDDDHDIKP 269
           SYW+WDDINTF ATDLNI WDD+HDIKP
Sbjct: 241 SYWTWDDINTFTATDLNIPWDDEHDIKP 260

[Close]

BLAST of Lsi01G003360 vs. ExPASy TrEMBL
Match: A0A6J1GEQ8 (dof zinc finger protein MNB1A-like OS=Cucurbita moschata OX=3662 GN=LOC111453517 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 9.8e-91
Identity = 193/277 (69.68%), Postives = 204/277 (73.65%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSID FDWSK L   QKL       S+ VKRS H   +Q   Q EQLKCPRCD
Sbjct: 1   MGLSSKQVSIDVFDWSKTLTPPQKLS------SAAVKRSHH---HQNPSQTEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWT GGTLRNVPVGGGRKNKRLKKKP P   KSS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRKNKRLKKKPIP---KSS 120

Query: 121 SSAAAAAASTAAD--VINPQLDVHHFQNLPLYQGQIF------PPPSSSNWAECENFTTN 180
           SSA A+AA  AAD  +IN Q       +LPLYQG IF      PPPSS+NW ECENFTTN
Sbjct: 121 SSAIASAAVAAADGVMINTQF------SLPLYQGLIFPPPPPPPPPSSTNWVECENFTTN 180

Query: 181 YGILNSQNPDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTG 240
           YGILNSQN DFS VSTTT              DQELK  +TEQP NSTSTHHPWQLP+T 
Sbjct: 181 YGILNSQNADFSGVSTTT--------------DQELKAIETEQP-NSTSTHHPWQLPTTN 240

Query: 241 CGVTDMS-SSYWSWDDINTFAATDLNIAWDDDHDIKP 269
           C   DMS SSYWSW+DI+TFA TDLNI WDD+HDIKP
Sbjct: 241 CSGADMSNSSYWSWEDIDTFATTDLNILWDDNHDIKP 244

[Close]

BLAST of Lsi01G003360 vs. ExPASy TrEMBL
Match: A0A6J1IP95 (dof zinc finger protein DOF5.3-like OS=Cucurbita maxima OX=3661 GN=LOC111478708 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 5.4e-89
Identity = 185/273 (67.77%), Postives = 199/273 (72.89%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSID FDWSK L        PK   S+ VKRS H   +Q   Q EQLKCPRCD
Sbjct: 1   MGLSSKQVSIDVFDWSKTLTP------PKKLTSAAVKRSHH---HQNPSQTEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWT GGTLRNVPVGGGRKNKRLKKK  P S+ SS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRKNKRLKKKQIPKSSSSS 120

Query: 121 SSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIF----PPPSSSNWAECENFTTNYGIL 180
           S+AAAA A+    +IN Q       +LPLYQG IF    PPPSS+NW ECENFTTNYGIL
Sbjct: 121 SAAAAAVAAVDGVMINTQF------SLPLYQGLIFPPPPPPPSSTNWLECENFTTNYGIL 180

Query: 181 NSQNPDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTGCGVT 240
           NSQN DFS VSTTT              DQ+LK  +TEQP N+T THHPWQLP+T C   
Sbjct: 181 NSQNADFSGVSTTT--------------DQKLKAIETEQP-NTTGTHHPWQLPTTSCSGA 240

Query: 241 DMS-SSYWSWDDINTFAATDLNIAWDDDHDIKP 269
           DMS SSYWSW+DI+TFA TDLNI WD DHDIKP
Sbjct: 241 DMSNSSYWSWEDIDTFATTDLNILWDVDHDIKP 243

[Close]

BLAST of Lsi01G003360 vs. NCBI nr
Match: XP_038881249.1 (dof zinc finger protein DOF5.3-like [Benincasa hispida])

HSP 1 Score: 501.1 bits (1289), Expect = 5.8e-138
Identity = 248/268 (92.54%), Postives = 253/268 (94.40%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKR+QHQNQNQIQ QIEQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRAQHQNQNQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKP PNSTKSS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPTPNSTKSS 120

Query: 121 SSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSSSNWAECENFTTNYGILNSQN 180
           SS   AAASTAADVINPQ+DVHHFQNLPLYQG IFP PSSSNWAECENFTT+YGILNSQN
Sbjct: 121 SS---AAASTAADVINPQMDVHHFQNLPLYQGLIFPSPSSSNWAECENFTTSYGILNSQN 180

Query: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTGCGVTDMSS 240
           PDFSAVSTTTSTHSPISPKFNNYSDQELKPT+TEQ A     HHPWQLPSTGCGV DMSS
Sbjct: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTETEQLA-----HHPWQLPSTGCGVADMSS 240

Query: 241 SYWSWDDINTFAATDLNIAWDDDHDIKP 269
           SYWSW+DINTFAATDLNI WDDDHDIKP
Sbjct: 241 SYWSWEDINTFAATDLNIPWDDDHDIKP 260

[Close]

BLAST of Lsi01G003360 vs. NCBI nr
Match: XP_008439887.1 (PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis melo] >KAA0052706.1 dof zinc finger protein DOF1.4-like [Cucumis melo var. makuwa] >TYK13118.1 dof zinc finger protein DOF1.4-like [Cucumis melo var. makuwa])

HSP 1 Score: 495.4 bits (1274), Expect = 3.2e-136
Identity = 244/268 (91.04%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQ QIEQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKP  NS KSS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPTTNSKKSS 120

Query: 121 SSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSSSNWAECENFTTNYGILNSQN 180
           SS AA A   AAD+INPQ+DVHHFQNLPLYQG IF PPSSSNWAECENFTTNYGILNSQN
Sbjct: 121 SSTAATA---AADLINPQMDVHHFQNLPLYQGLIFSPPSSSNWAECENFTTNYGILNSQN 180

Query: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTGCGVTDMSS 240
           PDFSAVSTTTSTHSPISPKFNNYSDQELKPT+TEQP     THHPWQLPSTGCG+ DMSS
Sbjct: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTETEQP-----THHPWQLPSTGCGIGDMSS 240

Query: 241 SYWSWDDINTFAATDLNIAWDDDHDIKP 269
           SYWSWDDINTF ATDLNI WDD+HDIKP
Sbjct: 241 SYWSWDDINTFTATDLNIPWDDEHDIKP 260

[Close]

BLAST of Lsi01G003360 vs. NCBI nr
Match: XP_004134958.1 (dof zinc finger protein DOF1.4 [Cucumis sativus] >KGN49207.1 hypothetical protein Csa_003494 [Cucumis sativus])

HSP 1 Score: 488.8 bits (1257), Expect = 3.0e-134
Identity = 240/268 (89.55%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQ QIQ QIEQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQIQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKP  NS KSS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPTTNSKKSS 120

Query: 121 SSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSSSNWAECENFTTNYGILNSQN 180
           SS    AA+TAAD+INPQ+DVHHFQNLPLYQG IF PPSSSNWAECENFTTNYGILNSQN
Sbjct: 121 SS---TAATTAADLINPQMDVHHFQNLPLYQGLIFSPPSSSNWAECENFTTNYGILNSQN 180

Query: 181 PDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTGCGVTDMSS 240
           PDFSAVSTTTSTHSPISPKFNNYSD+ELKPT+TEQP     THHPWQLPSTGCG+ DMS+
Sbjct: 181 PDFSAVSTTTSTHSPISPKFNNYSDKELKPTETEQP-----THHPWQLPSTGCGIGDMSN 240

Query: 241 SYWSWDDINTFAATDLNIAWDDDHDIKP 269
           SYW+WDDINTF ATDLNI WDD+HDIKP
Sbjct: 241 SYWTWDDINTFTATDLNIPWDDEHDIKP 260

[Close]

BLAST of Lsi01G003360 vs. NCBI nr
Match: KAG7033886.1 (Dof zinc finger protein DOF5.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 345.1 bits (884), Expect = 5.3e-91
Identity = 194/277 (70.04%), Postives = 204/277 (73.65%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSID FDWSK L   QKL       S+ VKRS H   +Q   Q EQLKCPRCD
Sbjct: 1   MGLSSKQVSIDVFDWSKTLTPPQKLS------SAAVKRSHH---HQNPSQTEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWT GGTLRNVPVGGGRKNKRLKKKP P   KSS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRKNKRLKKKPIP---KSS 120

Query: 121 SSAAAAAASTAAD--VINPQLDVHHFQNLPLYQGQIF------PPPSSSNWAECENFTTN 180
           SSA A+AA  AAD  +IN Q       +LPLYQG IF      PPPSS+NW ECENFTTN
Sbjct: 121 SSAIASAAVAAADGVMINTQF------SLPLYQGLIFPPPPPPPPPSSTNWVECENFTTN 180

Query: 181 YGILNSQNPDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPSTG 240
           YGILNSQN DFS VSTTT              DQELK  +TEQP NSTSTHHPWQLP+T 
Sbjct: 181 YGILNSQNADFSGVSTTT--------------DQELKAIETEQP-NSTSTHHPWQLPTTN 240

Query: 241 CGVTDMS-SSYWSWDDINTFAATDLNIAWDDDHDIKP 269
           C   DMS SSYWSW+DI+TFA TDLNI WDDDHDIKP
Sbjct: 241 CSGADMSNSSYWSWEDIDTFATTDLNILWDDDHDIKP 244

[Close]

BLAST of Lsi01G003360 vs. NCBI nr
Match: KAG6603709.1 (Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343.2 bits (879), Expect = 2.0e-90
Identity = 191/278 (68.71%), Postives = 204/278 (73.38%), Query Frame = 0


Query: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQQQIEQLKCPRCD 60
           MGLSSKQVSID FDWSK L   QKL       S+ VKRS H   +Q   Q EQLKCPRCD
Sbjct: 1   MGLSSKQVSIDVFDWSKTLTPPQKLS------SAAVKRSHH---HQNPSQTEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKKPNPNSTKSS 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWT GGTLRNVPVGGGRKNKRLKKK  P S+ SS
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRKNKRLKKKQIPKSSSSS 120

Query: 121 SSAAAAAASTAAD---VINPQLDVHHFQNLPLYQGQIF------PPPSSSNWAECENFTT 180
           SS+A A+A+ AA    +IN Q       +LPLYQG IF      PPPSS+NW ECENFTT
Sbjct: 121 SSSAIASAAVAAADGVMINTQF------SLPLYQGLIFPPPPPPPPPSSTNWVECENFTT 180

Query: 181 NYGILNSQNPDFSAVSTTTSTHSPISPKFNNYSDQELKPTKTEQPANSTSTHHPWQLPST 240
           NYGILNSQN DFS VSTTT              DQELK  +TEQP NSTSTHHPWQLP+T
Sbjct: 181 NYGILNSQNADFSGVSTTT--------------DQELKAIETEQP-NSTSTHHPWQLPTT 240

Query: 241 GCGVTDMS-SSYWSWDDINTFAATDLNIAWDDDHDIKP 269
            C   DMS SSYWSW+DI+TFA TDLNI WDDDHDIKP
Sbjct: 241 NCSGADMSNSSYWSWEDIDTFATTDLNILWDDDHDIKP 248

[Close]

BLAST of Lsi01G003360 vs. TAIR 10
Match: AT1G28310.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-28
Identity = 76/170 (44.71%), Postives = 107/170 (62.94%), Query Frame = 0


Query: 40  QHQNQNQIQQQIEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPV 99
           Q Q Q Q QQ   QLKCPRCDS+NTKFCYYNNY+ SQPRHFC+ACKR+WT+GGTLRNVPV
Sbjct: 13  QQQQQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPV 72

Query: 100 GGG-RKNKRLKKKPNPNSTKSSSSAAAAAASTAADVINPQLDVHHFQNL---PLYQGQIF 159
           GG  RKNKR+K+     ST ++++A+  + + ++   NP   + HF ++   PL+ G   
Sbjct: 73  GGSYRKNKRVKRP----STATTTTASTVSTTNSSSPNNPH-QISHFSSMNHHPLFYG--- 132

Query: 160 PPPSSSNWAECENFTTNYGILNSQNPDFSAVSTTTSTHSP-ISPKFNNYS 205
               S + + C N   N  ++ S+  D S   +++   S  +S  F++ S
Sbjct: 133 ---LSDHMSSCNN---NLPMIPSRFSDSSKTCSSSGLESEFLSSGFSSLS 168

[Close]

BLAST of Lsi01G003360 vs. TAIR 10
Match: AT1G28310.2 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-28
Identity = 76/170 (44.71%), Postives = 107/170 (62.94%), Query Frame = 0


Query: 40  QHQNQNQIQQQIEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPV 99
           Q Q Q Q QQ   QLKCPRCDS+NTKFCYYNNY+ SQPRHFC+ACKR+WT+GGTLRNVPV
Sbjct: 27  QQQQQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPV 86

Query: 100 GGG-RKNKRLKKKPNPNSTKSSSSAAAAAASTAADVINPQLDVHHFQNL---PLYQGQIF 159
           GG  RKNKR+K+     ST ++++A+  + + ++   NP   + HF ++   PL+ G   
Sbjct: 87  GGSYRKNKRVKRP----STATTTTASTVSTTNSSSPNNPH-QISHFSSMNHHPLFYG--- 146

Query: 160 PPPSSSNWAECENFTTNYGILNSQNPDFSAVSTTTSTHSP-ISPKFNNYS 205
               S + + C N   N  ++ S+  D S   +++   S  +S  F++ S
Sbjct: 147 ---LSDHMSSCNN---NLPMIPSRFSDSSKTCSSSGLESEFLSSGFSSLS 182

[Close]

BLAST of Lsi01G003360 vs. TAIR 10
Match: AT3G21270.1 (DOF zinc finger protein 2 )

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-25
Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 38  RSQHQNQNQIQQQIEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNV 97
           + Q Q Q Q  +Q EQLKCPRCDS NTKFCYYNNYN SQPRHFC++C+R+WTKGG LRNV
Sbjct: 14  KQQQQQQPQFAEQ-EQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNV 73

Query: 98  PVGGGRKNKRLKKKPNPNSTKSSSSAAAAAAST 131
           PVGGG +    K+     ST SSSSA++ + S+
Sbjct: 74  PVGGGSRKNATKR-----STSSSSSASSPSNSS 100

[Close]

BLAST of Lsi01G003360 vs. TAIR 10
Match: AT2G37590.1 (DNA binding with one finger 2.4 )

HSP 1 Score: 112.1 bits (279), Expect = 7.1e-25
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 54  LKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGG-RKNKRLKKKP 113
           LKCPRC+STNTKFCY+NNY+ +QPRHFC+ C+R+WT+GG LRNVPVGGG R+N+R K   
Sbjct: 89  LKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTKSNS 148

Query: 114 NPNSTKSSSSAAAAAASTAADVINPQLDVHHFQNLPLYQGQIFPPPSSSN 163
           N N+  +++S   + +S  A  I+  L  H+  N      QI  P    N
Sbjct: 149 NNNNNSTATSNNTSFSSGNASTISTILSSHYGGNQESILSQILSPARLMN 198

[Close]

BLAST of Lsi01G003360 vs. TAIR 10
Match: AT1G51700.1 (DOF zinc finger protein 1 )

HSP 1 Score: 109.0 bits (271), Expect = 6.0e-24
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 42  QNQNQIQQQIEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGG 101
           QNQ ++ +Q EQLKCPRCDS NTKFCYYNNYN SQPRHFC+ C+R+WTKGG LRN+PVGG
Sbjct: 22  QNQPELPEQ-EQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGG 81

Query: 102 GRKNKRLKKKPNPNSTKSSSSAA 125
           G +    +   +P+S   + + A
Sbjct: 82  GTRKSNKRSGSSPSSNLKNQTVA 103

The following BLAST results are available for this feature:

BLAST of Lsi01G003360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZA4	5.6e-27	44.71	Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana OX=3702 GN=DOF1.4 PE=2 SV...	[more]
Q94AR6	2.6e-24	62.37	Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV...	[more]
O80928	1.0e-23	50.00	Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana OX=3702 GN=DOF2.4 PE=2 SV...	[more]
B9F1L8	2.9e-23	46.46	Dof zinc finger protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF2 PE=2 ...	[more]
O24463	3.8e-23	50.00	Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1	[more]

BLAST of Lsi01G003360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPL5	1.5e-136	91.04	Dof zinc finger protein DOF1.4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3AZE8	1.5e-136	91.04	dof zinc finger protein DOF1.4-like OS=Cucumis melo OX=3656 GN=LOC103484541 PE=4...	[more]
A0A0A0KLF4	1.4e-134	89.55	Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517150 PE...	[more]
A0A6J1GEQ8	9.8e-91	69.68	dof zinc finger protein MNB1A-like OS=Cucurbita moschata OX=3662 GN=LOC111453517...	[more]
A0A6J1IP95	5.4e-89	67.77	dof zinc finger protein DOF5.3-like OS=Cucurbita maxima OX=3661 GN=LOC111478708 ...	[more]

BLAST of Lsi01G003360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881249.1	5.8e-138	92.54	dof zinc finger protein DOF5.3-like [Benincasa hispida]	[more]
XP_008439887.1	3.2e-136	91.04	PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis melo] >KAA0052706.1 dof ...	[more]
XP_004134958.1	3.0e-134	89.55	dof zinc finger protein DOF1.4 [Cucumis sativus] >KGN49207.1 hypothetical protei...	[more]
KAG7033886.1	5.3e-91	70.04	Dof zinc finger protein DOF5.4, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6603709.1	2.0e-90	68.71	Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi01G003360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28310.1	4.0e-28	44.71	Dof-type zinc finger DNA-binding family protein	[more]
AT1G28310.2	4.0e-28	44.71	Dof-type zinc finger DNA-binding family protein	[more]
AT3G21270.1	1.9e-25	62.37	DOF zinc finger protein 2	[more]
AT2G37590.1	7.1e-25	50.00	DNA binding with one finger 2.4	[more]
AT1G51700.1	6.0e-24	60.24	DOF zinc finger protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 53..106 e-value: 6.8E-32 score: 109.4
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 56..92
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 54..108 score: 27.484135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..124
None	No IPR available	PANTHER	PTHR31992:SF97	OS06G0284500 PROTEIN	coord: 40..219
None	No IPR available	PANTHER	PTHR31992	DOF ZINC FINGER PROTEIN DOF1.4-RELATED	coord: 40..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G003360.1	Lsi01G003360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding