Lsi01G003210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G003210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDUF1771 domain-containing protein
Locationchr01: 2834504 .. 2836399 (-)
RNA-Seq ExpressionLsi01G003210
SyntenyLsi01G003210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGTGTTTTGATGGAGTTTTTAACCAATTATCTGATCCTGTGTTTGCTTAATGCTCATTGCACAAATGATGTGATGCTACAAGTATGCAATAGTTTCCTTGGACGAATAAGATGTACTATTTTTTTCAACTTGGGAAATGAAATAGTAGTCCATTATTTTATATACAAAATGTTACCATAACCTCGTAGATTGGGGTGCAAACTCATGTTCCTATGATGTGCACGAGGTAGGGGCACTTTTTTCATAAAAAAGCTCAAGAGGCAGATGAACAATCAAACCAGTTAATTTTTGAACCCAGGTTAGTGGTTATGGTCTCTACAAGTATGCTTTTTCAATCTGCAGTGTTTTAAACGTTTGCTATTCCACTTCAGGCTCACTTTATCTGTTTTGTTAATAAGCAGAGATGCAGATACTGAAGACGATGAAATATTGCTTGATTTGCATGACCTTGGTGGCAAGGAGGCAGTGAGCGTTTTAAAATCTCAAATTTCTTCACTCTCCGGAATCCCATGTGAGTTCCTCTGTCTTTTTTCTCCTTGATTTATTTCTTTCCATTCCATAATTGCATTTTTTAGTTGTCCATATCATATATTGACACAACTTCCTTTTGTTTACAGCAATTAAACATCTTAAAGTAATCATGGAGGCAGATGATAAAGATACCTCAAAGCGGTCTTGTAGACGTTTGGTAAGAACTTAACCTGGAAGCATTTTCTTGTGGTTCATCCTTTTTTGTTGATTTTTCTTTCTTTCTCAGTTTTTGGTCAAGGAGGGGATGGGACATGAGAGTGATGTTGGAGGTTGCTAGTGGTGGAAGTAAAAAAGAAAAAGAAAAAAAAAAGGAAAAAAGTTATATTCAACCAGGTGCAATGGTGCTAGACTCTGCCAGTAGGGCTTCAATAGTTGCTCTCTGCTCTACATATTACATAGATCAGTAGAAAACTGTAGTTCAACTAGTTAAAATATATACCTTTGATCTAAAAGTTAGAGATTCAAAATTCTATTTTATGCTATTGAATTCAAAAGAGAGAACTATAACTTAGCCCATGTTACATGTAGGTTATCTATAGTCATCGCTCACCGGGTCGTGCTCATAGTCTGCCTCATTTGCATGCATGCATGAACTATTTACATAAAAGCTTGATTACTTGTCAAATGATAGTATTGGTACATGATATTGCTAACATTTGATGCATACTTTTAGAATCTGGTTACATTATGAACTTCTATCTGAACTCTAATGTTGTGATTTACATTATATTCTTGTTGTCCTTTTATGGGAAAGGTTATGAAGCTGTTGGAGAAAGAGTCGATCGAGTGGACCGAGGAAGAAAATGGCGGTTCCATTCTAATTCGCTTGGATACTATTGATCGAAAACGGTTAAGTTTCATCAAAAGAATGCATTGAGAACAAATGGGCAACAAAAAGAACAAAAAAATGAATAGGATAATTTATATGCATCACGGGAGAAGACCTATACATTTGTGTTTTTTGAATCTACATCCACGGCCCCAAGTGTTTGTTTTGGTGGATGGAGCTCGAGATTTGAGGCCACATCATTGGGGAGAAACCTTGAAGAAAATGAAAGTTTGCATTTTTTGAAATCGCTTAATACAACGAATTTTTGTAAACTGTAAAGTTGTGCATCTTTGAGATGAGCTTTTAGGTTACATATTATCAGGTTATAGAAATATTTTTGAAAAACACACCAAAAAAGTCCAACCAAACTCTCCCTATCATATAGTGCTTTGTTATTTTTTCTTCCTTTTAAATTAGAGATTGTCATATGATGATGAATTAGAAAAGAGTATGAATGTATTTTGAACTCGACCGCTTGGTTGAGAATGATTTAATCAAATGTGTTATCTGGGTATGATTTAATCTTTAAA

mRNA sequence

ATGGGAGATGCAGATACTGAAGACGATGAAATATTGCTTGATTTGCATGACCTTGGTGGCAAGGAGGCAGTGAGCGTTTTAAAATCTCAAATTTCTTCACTCTCCGGAATCCCATCAATTAAACATCTTAAAGTAATCATGGAGGCAGATGATAAAGATACCTCAAAGCGGTCTTGTAGACGTTTGTTTTTGGTCAAGGAGGGGATGGGACATGAGAGTGATGTTGGAGGTTATGAAGCTGTTGGAGAAAGAGTCGATCGAGTGGACCGAGGAAGAAAATGGCGGTTCCATTCTAATTCGCTTGGATACTATTGATCGAAAACGGTTAAGTTTCATCAAAAGAATGCATTGAGAACAAATGGGCAACAAAAAGAACAAAAAAATGAATAGGATAATTTATATGCATCACGGGAGAAGACCTATACATTTGTGTTTTTTGAATCTACATCCACGGCCCCAAGTGTTTGTTTTGGTGGATGGAGCTCGAGATTTGAGGCCACATCATTGGGGAGAAACCTTGAAGAAAATGAAAGTTTGCATTTTTTGAAATCGCTTAATACAACGAATTTTTGTAAACTGTAAAGTTGTGCATCTTTGAGATGAGCTTTTAGGTTACATATTATCAGGTTATAGAAATATTTTTGAAAAACACACCAAAAAAGTCCAACCAAACTCTCCCTATCATATAGTGCTTTGTTATTTTTTCTTCCTTTTAAATTAGAGATTGTCATATGATGATGAATTAGAAAAGAGTATGAATGTATTTTGAACTCGACCGCTTGGTTGAGAATGATTTAATCAAATGTGTTATCTGGGTATGATTTAATCTTTAAA

Coding sequence (CDS)

ATGGGAGATGCAGATACTGAAGACGATGAAATATTGCTTGATTTGCATGACCTTGGTGGCAAGGAGGCAGTGAGCGTTTTAAAATCTCAAATTTCTTCACTCTCCGGAATCCCATCAATTAAACATCTTAAAGTAATCATGGAGGCAGATGATAAAGATACCTCAAAGCGGTCTTGTAGACGTTTGTTTTTGGTCAAGGAGGGGATGGGACATGAGAGTGATGTTGGAGGTTATGAAGCTGTTGGAGAAAGAGTCGATCGAGTGGACCGAGGAAGAAAATGGCGGTTCCATTCTAATTCGCTTGGATACTATTGA

Protein sequence

MGDADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRLFLVKEGMGHESDVGGYEAVGERVDRVDRGRKWRFHSNSLGYY
Homology
[Close]
BLAST of Lsi01G003210 vs. ExPASy TrEMBL
Match: A0A1S3B0H0 (putative nuclear RNA export factor SDE5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484526 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 0 

Query: 4   ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL- 63
           ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL 
Sbjct: 406 ADTEDDEMLLDLHDLGGKEAVKVLKSQISSLSGIPSIKHLKVIMEADDKNTSKRSCRRLV 465

Query: 64  --FLVKEGM-GHESDVGGYEAVGERVDRVDRGR 93
              L KE +   E + G Y  +   +D +DR R
Sbjct: 466 MKLLEKESIQWTEEESGSYILI--HLDTIDRKR 496

[Close]
BLAST of Lsi01G003210 vs. ExPASy TrEMBL
Match: A0A1S3AZR4 (putative nuclear RNA export factor SDE5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484526 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 0 

Query: 4   ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL- 63
           ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL 
Sbjct: 380 ADTEDDEMLLDLHDLGGKEAVKVLKSQISSLSGIPSIKHLKVIMEADDKNTSKRSCRRLV 439

Query: 64  --FLVKEGM-GHESDVGGYEAVGERVDRVDRGR 93
              L KE +   E + G Y  +   +D +DR R
Sbjct: 440 MKLLEKESIQWTEEESGSYILI--HLDTIDRKR 470

[Close]
BLAST of Lsi01G003210 vs. ExPASy TrEMBL
Match: A0A0A0KNB3 (DUF1771 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517290 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 0 

Query: 4   ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL- 63
           ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL 
Sbjct: 406 ADTEDDEMLLDLHDLGGKEAVKVLKSQISSLSGIPSIKHLKVIMEADDKNTSKRSCRRLV 465

Query: 64  --FLVKEGM-GHESDVGGYEAVGERVDRVDRGR 93
              L KE +   E + G Y  +   +D +DR R
Sbjct: 466 MKLLEKESIEWTEEENGSYILI--HLDTIDRKR 496

[Close]
BLAST of Lsi01G003210 vs. ExPASy TrEMBL
Match: A0A6J1KLP7 (putative nuclear RNA export factor SDE5 OS=Cucurbita maxima OX=3661 GN=LOC111496867 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.8e-22
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 0 

Query: 3   DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL 62
           +ADTEDDE+LLDLHD+GGKEAV VLKSQISSLSGIPSIKHLKVI EADDKDTSKRSCRRL
Sbjct: 400 NADTEDDEMLLDLHDIGGKEAVRVLKSQISSLSGIPSIKHLKVIFEADDKDTSKRSCRRL 459

Query: 63  ---FLVKEGMGHESDVGGYEAVGERVDRVDR 91
               L KE +    +  G  ++  R+D +DR
Sbjct: 460 VTKLLEKESIQWTEEENG-SSIVIRLDTIDR 489

[Close]
BLAST of Lsi01G003210 vs. ExPASy TrEMBL
Match: A0A6J1CL01 (putative nuclear RNA export factor SDE5 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012400 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.4e-21
Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 3   DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL 62
           +ADTEDDEILLDLH+LGG+EAVSVLKSQISSLS IPSIKHLKVI+EA+DKDTSKRSCRRL
Sbjct: 384 NADTEDDEILLDLHNLGGREAVSVLKSQISSLSQIPSIKHLKVIIEANDKDTSKRSCRRL 443

Query: 63  ---FLVKEGM-GHESDVGGYEAVGERVDRVDR 91
               L KE +   E + GG+  +  R+D +DR
Sbjct: 444 VMKLLEKESIEWTEEENGGFILI--RLDTIDR 473

[Close]
BLAST of Lsi01G003210 vs. NCBI nr
Match: XP_008439864.1 (PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo] >XP_008439865.1 PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo] >XP_008439866.1 PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo] >XP_008439867.1 PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 4.5e-22
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 0 

Query: 4   ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL- 63
           ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL 
Sbjct: 406 ADTEDDEMLLDLHDLGGKEAVKVLKSQISSLSGIPSIKHLKVIMEADDKNTSKRSCRRLV 465

Query: 64  --FLVKEGM-GHESDVGGYEAVGERVDRVDRGR 93
              L KE +   E + G Y  +   +D +DR R
Sbjct: 466 MKLLEKESIQWTEEESGSYILI--HLDTIDRKR 496

[Close]
BLAST of Lsi01G003210 vs. NCBI nr
Match: XP_008439868.1 (PREDICTED: putative nuclear RNA export factor SDE5 isoform X2 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 4.5e-22
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 0 

Query: 4   ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL- 63
           ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL 
Sbjct: 380 ADTEDDEMLLDLHDLGGKEAVKVLKSQISSLSGIPSIKHLKVIMEADDKNTSKRSCRRLV 439

Query: 64  --FLVKEGM-GHESDVGGYEAVGERVDRVDRGR 93
              L KE +   E + G Y  +   +D +DR R
Sbjct: 440 MKLLEKESIQWTEEESGSYILI--HLDTIDRKR 470

[Close]
BLAST of Lsi01G003210 vs. NCBI nr
Match: XP_004134709.1 (putative nuclear RNA export factor SDE5 [Cucumis sativus] >KGN49221.1 hypothetical protein Csa_003521 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 0 

Query: 4   ADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL- 63
           ADTEDDE+LLDLHDLGGKEAV VLKSQISSLSGIPSIKHLKVIMEADDK+TSKRSCRRL 
Sbjct: 406 ADTEDDEMLLDLHDLGGKEAVKVLKSQISSLSGIPSIKHLKVIMEADDKNTSKRSCRRLV 465

Query: 64  --FLVKEGM-GHESDVGGYEAVGERVDRVDRGR 93
              L KE +   E + G Y  +   +D +DR R
Sbjct: 466 MKLLEKESIEWTEEENGSYILI--HLDTIDRKR 496

[Close]
BLAST of Lsi01G003210 vs. NCBI nr
Match: XP_023003172.1 (putative nuclear RNA export factor SDE5 [Cucurbita maxima])

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-22
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 0 

Query: 3   DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL 62
           +ADTEDDE+LLDLHD+GGKEAV VLKSQISSLSGIPSIKHLKVI EADDKDTSKRSCRRL
Sbjct: 400 NADTEDDEMLLDLHDIGGKEAVRVLKSQISSLSGIPSIKHLKVIFEADDKDTSKRSCRRL 459

Query: 63  ---FLVKEGMGHESDVGGYEAVGERVDRVDR 91
               L KE +    +  G  ++  R+D +DR
Sbjct: 460 VTKLLEKESIQWTEEENG-SSIVIRLDTIDR 489

[Close]
BLAST of Lsi01G003210 vs. NCBI nr
Match: XP_038881794.1 (putative nuclear RNA export factor SDE5 [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-21
Identity = 64/93 (68.82%), Postives = 74/93 (79.57%), Query Frame = 0 

Query: 3   DADTEDDEILLDLHDLGGKEAVSVLKSQISSLSGIPSIKHLKVIMEADDKDTSKRSCRRL 62
           +ADTE+DEILLDL+DLGG+EAVSVLKSQISSLSGIPSIKHLKV MEADDKDTSKRSCRRL
Sbjct: 402 NADTEEDEILLDLNDLGGREAVSVLKSQISSLSGIPSIKHLKVTMEADDKDTSKRSCRRL 461

Query: 63  ---FLVKEGMGHESDVGGYEAVGERVDRVDRGR 93
               L KE +    +  G  ++  R+D +DR R
Sbjct: 462 VMKLLEKESIEWTEEENG-GSILIRLDTIDRKR 493

The following BLAST results are available for this feature:
BLAST of Lsi01G003210 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G003210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B0H02.2e-2270.97putative nuclear RNA export factor SDE5 isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A1S3AZR42.2e-2270.97putative nuclear RNA export factor SDE5 isoform X2 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0KNB32.9e-2270.97DUF1771 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517290 PE=... [more]
A0A6J1KLP73.8e-2269.23putative nuclear RNA export factor SDE5 OS=Cucurbita maxima OX=3661 GN=LOC111496... [more]
A0A6J1CL012.4e-2169.57putative nuclear RNA export factor SDE5 isoform X1 OS=Momordica charantia OX=367... [more]
BLAST of Lsi01G003210 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439864.14.5e-2270.97PREDICTED: putative nuclear RNA export factor SDE5 isoform X1 [Cucumis melo] >XP... [more]
XP_008439868.14.5e-2270.97PREDICTED: putative nuclear RNA export factor SDE5 isoform X2 [Cucumis melo][more]
XP_004134709.15.9e-2270.97putative nuclear RNA export factor SDE5 [Cucumis sativus] >KGN49221.1 hypothetic... [more]
XP_023003172.17.8e-2269.23putative nuclear RNA export factor SDE5 [Cucurbita maxima][more]
XP_038881794.12.9e-2168.82putative nuclear RNA export factor SDE5 [Benincasa hispida][more]
BLAST of Lsi01G003210 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1370.110coord: 3..104
e-value: 5.4E-5
score: 25.2
NoneNo IPR availablePANTHERPTHR47872NUCLEAR RNA EXPORT FACTOR SDE5-RELATEDcoord: 4..63
NoneNo IPR availablePANTHERPTHR47872:SF3PROTEIN SILENCING DEFECTIVE PROTEINcoord: 4..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G003210.1Lsi01G003210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0097573 glutathione oxidoreductase activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0046872 metal ion binding