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Lsi01G002970 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAGAAATAAAATAATTAAAAAAAAAAAAGAGGAAGAAGAAGAAAGGAAATTTGGTGGCATGGAGATGGAGCGTGTAAAGGTGAGGCATAGCCATCTGTGTGTTGGTAGTTTCAGAAACGCCTTTGGTTAACTTCAACTTCAAATCTAATCTCAGGAAAAGGTCAAAATCAATTCCACCCTTCAATTCTTCTTTCTTTCTTTCTTCTTTTCCATCAATCATTCTCTTCATCAAACCATACCCTATTTCCGGTCCTTCCTTTTCTCTCTTCTGTTTCTTTTATCCTTCCATCTCCCACCTCCCCAACCCCTCCCCCATACGCTTCTTGGAGTTTCTTCTTTTCAGCTACTCGGGAACGCGTTCTGTTCTTCTTTCTTTTTCTCCCCCTTTTCCCCTTTTCTTACTCTCATTCCAATTTTCCATCCTTTTTTTGGACTTTCCTCTCTCGGAAATGGATTCCGATTTCTGGACCTCTCGCCTTGCCGCCGCTAAACGCCAGTATATGTTGCAGCAGCATCACCAGACCTCCAACTTAGGTTTTCCATCCCTTCCTGATCTACCCCTTTTTGTTTTTTTTTTTTCTCTTTTTGTTCTAATTGGTTGATTTGCTTTGGTTTAGATCTGTTGGGAATCGATGATTTGGAGATGGATGATGACGCCCGCCCCCATTTTCCTTGCCCTTTTTGCTATGAGAATTTTGATGTTATGTCCCTCTGTTCGCATCTGGAAGACGAGCACTCTTGCGAGACAAGAGTCACGGTACGTATTTCCCCCATTTCTCTTATCTGGGTGCTATTTAAAATTTGAAATTTTATATACTATTCACCTGGGATTGGGAGGATGCTTTTTTCTTAATGCTATTACTGTTGTTTCCACCGTTGCTGATAGCTGGTTTTCAATTTATTCTCTTGTTTCATGTTCAGAGAGGTGTTGTGTTTGGACATTCTGTGATTATAGTTCTGCTAATCCTATGTAGTTGTTGTATGTAAGAATTGTTTTAGGTTAATCTAAAGTTTAAGTTTGCCTGTGAAATTAATTTGCTCCTCCTCCATTATTTGATGAGATTCCCAAAGTAATTTAATTAAACTGCGAGGAAAAAGAAACTTGTGCCATATCAACTTTCATCAGCTCTCACTGTTTCTGCACCTCTAGGTTATTGGTTTATGAGAAATTTGGGTTCTGCTTAATTTGTATTTTCCTTGCAGGTTTGTCCCATATGCTCAGTTAAAGTCATGGGGGACATGTTAAGTCATATAACATTGCACCATGGGCACTTATACAAGATATCCTTTAAATTTTATACTTGTTTTTTTACTGACTTCTGTCATTTAATTCAAGTGGGTATATTTTGAGGAGGAAACTATTAGTTTCACCATGTTCATCTTGTTTGCTTAACAAAGGATCACCTTCAGAGGCGCCGCAGGTTGCGTAAGATTGCCATCCCCAACAGTCAGGCATTGTCCCTCTTGAGCCGGGACCTTCGTGAGGCTCATCTGCAGGTGCTTCTAGGGAGCAGTGGATACCGTACAAGCACCACTAATGTGCCTAGTGCAACTCATGATCCATTTTTATCATCACTTATTTTAAATTATCCTGCATCTGAAGTTGAAGATATCTCAAAATCCATGCTAACCAGTGCCGAAGACACATCTTCAGAGAACGTGGCACCATCACCGATTTGGAAATCAAGGTAATTGTCCACATCCCTTTCTTCTTCTTTCTTTTTCCTTTTATAGTTATGGATTTCTCTCTTATTGATAATTCCTCAAGCCATTATTTTGTTCGTACATCCAAAAAGGTTTGGTTAGATCAAGAAACTGTTGTTATACCTTTCAATTCCCTTATATGCCATGACTGAAAGTCCCTATGCTTAAATCCAATCCAAGTAATTCCATCAGCATGTACAACTACTGGTGTTTGGTCATAAGGTAAGAAATTTTCCTTAATGACCACAGTCAAGTAACAGAGATCTGCCTGTTTAGCATCGACAGAGGAATTAGTCTAGTTACGCCCTGTGATTGTCTCTTCCTGTTGTTTAGTATTAACACTTCCCTCCCTATCTCCAGTTTTGATCCTTCTTTGAGCCAAGAAGAGCGGGAAAAAAGGATGAGACAGGCTGTTGGGAGAGCAGGCTTTATGCGAGATATGCTTTTCTCAACTCTCTTAGAGGACTAATGAAAGCAGTAAGTTATTACGAAAATGATGCAAAAATGAATAAATTAACAGACGTTGAATTGATTGTTATGGCTTTATTTGTTGTCAACCTCGACCCAATATCAAACTCATTGAGATCAAACACTCTTTGAGTATGGTTGATGATAATATCCTTCATTACAACCAATGAATGGATTACATTGAATATAAAGTCAGTCTGTTTATTTATTTGATATTTTAGTTGTACCATATTAAATTGCGGTTGTGTTGCTAGAAGAATTTGAATGTAAAAATTTCAGAATAATGAACGACAAAAGGGGAGCATTATGCTCATTGGCGCTCGAAGGTCAGCCGGGCAGGACCAGGAGCCAGACCATATCACAATACAAGGAGAAAATTTGAAGAGAAACTTCGATGGGGTCAACACAGCGTAAGAATCTCCGATTGAATGGCAACTATTGGGACTGGGCCTACGGCTACTTCCAAGGAAATTATCAATGCTTTTTCTTTTTTATACATTCTCTTTTCATTATGACACAACTCAGTTGAATTATCATTCTGAAATTGAGACGCTGCAATTTATTATAGCTTGATAATGAATTGGAATTTGCTGTTCTAATTGAGATCAAAGATGCCAAGGGTTCATGGAAGGAAACATTACATATTATCTCACTGCTTACTGTCTATTATTTTTCAATTCATTTTAGCTATTTTAGGCAACTATGGGGGGTTTGGAGCACCAACATGAAATTGGTGGAGTATTATAATCCACCCATGATTGAGGTACTAATTATAATAGTTGGTAAGTTACAAATTAATTGCAGTATTACTATTTCAAATTATTTTTTCCTGCTCGGTTTACTATACTATTTTATAACTCAGACTAAATTAGTCTGTATTTTAGACAGAGACTATTATAACTCACCGACTATAATGATGTCTCAAATGCTCATTGGGCTATAATGGTGGTAATTTTGGCATGAGGTATATTGGCATTAGGAACCGGTTTGGTATTTTTATTCAAATTGTGTTCTCAACTAATGTTGCTATCAAATTATTATTTTTATTTAA GAGAAATAAAATAATTAAAAAAAAAAAAGAGGAAGAAGAAGAAAGGAAATTTGGTGGCATGGAGATGGAGCGTGTAAAGGTGAGGCATAGCCATCTGTGTGTTGGTAGTTTCAGAAACGCCTTTGGTTAACTTCAACTTCAAATCTAATCTCAGGAAAAGGTCAAAATCAATTCCACCCTTCAATTCTTCTTTCTTTCTTTCTTCTTTTCCATCAATCATTCTCTTCATCAAACCATACCCTATTTCCGGTCCTTCCTTTTCTCTCTTCTGTTTCTTTTATCCTTCCATCTCCCACCTCCCCAACCCCTCCCCCATACGCTTCTTGGAGTTTCTTCTTTTCAGCTACTCGGGAACGCGTTCTGTTCTTCTTTCTTTTTCTCCCCCTTTTCCCCTTTTCTTACTCTCATTCCAATTTTCCATCCTTTTTTTGGACTTTCCTCTCTCGGAAATGGATTCCGATTTCTGGACCTCTCGCCTTGCCGCCGCTAAACGCCAGTATATGTTGCAGCAGCATCACCAGACCTCCAACTTAGATCTGTTGGGAATCGATGATTTGGAGATGGATGATGACGCCCGCCCCCATTTTCCTTGCCCTTTTTGCTATGAGAATTTTGATGTTATGTCCCTCTGTTCGCATCTGGAAGACGAGCACTCTTGCGAGACAAGAGTCACGGATCACCTTCAGAGGCGCCGCAGGTTGCGTAAGATTGCCATCCCCAACAGTCAGGCATTGTCCCTCTTGAGCCGGGACCTTCGTGAGGCTCATCTGCAGGTGCTTCTAGGGAGCAGTGGATACCGTACAAGCACCACTAATGTGCCTAGTGCAACTCATGATCCATTTTTATCATCACTTATTTTAAATTATCCTGCATCTGAAGTTGAAGATATCTCAAAATCCATGCTAACCAGTGCCGAAGACACATCTTCAGAGAACGTGGCACCATCACCGATTTGGAAATCAAGGTAATTGTCCACATCCCTTTCTTCTTCTTTCTTTTTCCTTTTATAGTTATGGATTTCTCTCTTATTGATAATTCCTCAAGCCATTATTTTGTTCGTACATCCAAAAAGGTTTGGTTAGATCAAGAAACTGTTGTTATACCTTTCAATTCCCTTATATGCCATGACTGAAAGTCCCTATGCTTAAATCCAATCCAAGTAATTCCATCAGCATGTACAACTACTGGTGTTTGGTCATAAGGTAAGAAATTTTCCTTAATGACCACAGTCAAGTAACAGAGATCTGCCTGTTTAGCATCGACAGAGGAATTAGTCTAGTTACGCCCTGTGATTGTCTCTTCCTGTTGTTTAGTATTAACACTTCCCTCCCTATCTCCAGTTTTGATCCTTCTTTGAGCCAAGAAGAGCGGGAAAAAAGGATGAGACAGGCTGTTGGGAGAGCAGGCTTTATGCGAGATATGCTTTTCTCAACTCTCTTAGAGGACTAATGAAAGCAGTAAGTTATTACGAAAATGATGCAAAAATGAATAAATTAACAGACGTTGAATTGATTGTTATGGCTTTATTTGTTGTCAACCTCGACCCAATATCAAACTCATTGAGATCAAACACTCTTTGAGTATGGTTGATGATAATATCCTTCATTACAACCAATGAATGGATTACATTGAATATAAAGTCAGTCTGTTTATTTATTTGATATTTTAGTTGTACCATATTAAATTGCGGTTGTGTTGCTAGAAGAATTTGAATGTAAAAATTTCAGAATAATGAACGACAAAAGGGGAGCATTATGCTCATTGGCGCTCGAAGGTCAGCCGGGCAGGACCAGGAGCCAGACCATATCACAATACAAGGAGAAAATTTGAAGAGAAACTTCGATGGGGTCAACACAGCGTAAGAATCTCCGATTGAATGGCAACTATTGGGACTGGGCCTACGGCTACTTCCAAGGAAATTATCAATGCTTTTTCTTTTTTATACATTCTCTTTTCATTATGACACAACTCAGTTGAATTATCATTCTGAAATTGAGACGCTGCAATTTATTATAGCTTGATAATGAATTGGAATTTGCTGTTCTAATTGAGATCAAAGATGCCAAGGGTTCATGGAAGGAAACATTACATATTATCTCACTGCTTACTGTCTATTATTTTTCAATTCATTTTAGCTATTTTAGGCAACTATGGGGGGTTTGGAGCACCAACATGAAATTGGTGGAGTATTATAATCCACCCATGATTGAGGTACTAATTATAATAGTTGGTAAGTTACAAATTAATTGCAGTATTACTATTTCAAATTATTTTTTCCTGCTCGGTTTACTATACTATTTTATAACTCAGACTAAATTAGTCTGTATTTTAGACAGAGACTATTATAACTCACCGACTATAATGATGTCTCAAATGCTCATTGGGCTATAATGGTGGTAATTTTGGCATGAGGTATATTGGCATTAGGAACCGGTTTGGTATTTTTATTCAAATTGTGTTCTCAACTAATGTTGCTATCAAATTATTATTTTTATTTAA ATGGATTCCGATTTCTGGACCTCTCGCCTTGCCGCCGCTAAACGCCAGTATATGTTGCAGCAGCATCACCAGACCTCCAACTTAGATCTGTTGGGAATCGATGATTTGGAGATGGATGATGACGCCCGCCCCCATTTTCCTTGCCCTTTTTGCTATGAGAATTTTGATGTTATGTCCCTCTGTTCGCATCTGGAAGACGAGCACTCTTGCGAGACAAGAGTCACGGATCACCTTCAGAGGCGCCGCAGGTTGCGTAAGATTGCCATCCCCAACAGTCAGGCATTGTCCCTCTTGAGCCGGGACCTTCGTGAGGCTCATCTGCAGGTGCTTCTAGGGAGCAGTGGATACCGTACAAGCACCACTAATGTGCCTAGTGCAACTCATGATCCATTTTTATCATCACTTATTTTAAATTATCCTGCATCTGAAGTTGAAGATATCTCAAAATCCATGCTAACCAGTGCCGAAGACACATCTTCAGAGAACGTGGCACCATCACCGATTTGGAAATCAAGGTAA MDSDFWTSRLAAAKRQYMLQQHHQTSNLDLLGIDDLEMDDDARPHFPCPFCYENFDVMSLCSHLEDEHSCETRVTDHLQRRRRLRKIAIPNSQALSLLSRDLREAHLQVLLGSSGYRTSTTNVPSATHDPFLSSLILNYPASEVEDISKSMLTSAEDTSSENVAPSPIWKSR Homology
BLAST of Lsi01G002970 vs. ExPASy Swiss-Prot
Match: Q6H6E6 (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DI19-4 PE=2 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37 Identity = 96/210 (45.71%), Postives = 124/210 (59.05%), Query Frame = 0
BLAST of Lsi01G002970 vs. ExPASy Swiss-Prot
Match: Q688X9 (Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica OX=39947 GN=DI19-1 PE=2 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 7.3e-36 Identity = 86/194 (44.33%), Postives = 119/194 (61.34%), Query Frame = 0
BLAST of Lsi01G002970 vs. ExPASy Swiss-Prot
Match: Q5QMP3 (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DI19-3 PE=2 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24 Identity = 80/214 (37.38%), Postives = 109/214 (50.93%), Query Frame = 0
BLAST of Lsi01G002970 vs. ExPASy Swiss-Prot
Match: Q5W794 (Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DI19-2 PE=2 SV=2) HSP 1 Score: 86.3 bits (212), Expect = 3.8e-16 Identity = 64/178 (35.96%), Postives = 92/178 (51.69%), Query Frame = 0
BLAST of Lsi01G002970 vs. ExPASy Swiss-Prot
Match: Q8VXU6 (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=DI19-4 PE=1 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.4e-15 Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 0
BLAST of Lsi01G002970 vs. ExPASy TrEMBL
Match: A0A0A0KK83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518060 PE=3 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82 Identity = 164/195 (84.10%), Postives = 166/195 (85.13%), Query Frame = 0
BLAST of Lsi01G002970 vs. ExPASy TrEMBL
Match: A0A1S4DTM1 (protein DEHYDRATION-INDUCED 19 homolog 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484501 PE=3 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 4.1e-82 Identity = 164/196 (83.67%), Postives = 166/196 (84.69%), Query Frame = 0
BLAST of Lsi01G002970 vs. ExPASy TrEMBL
Match: A0A5A7UBX9 (Protein DEHYDRATION-INDUCED 19-like protein 4-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G002810 PE=3 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81 Identity = 161/191 (84.29%), Postives = 163/191 (85.34%), Query Frame = 0
BLAST of Lsi01G002970 vs. ExPASy TrEMBL
Match: A0A1S3AZN7 (protein DEHYDRATION-INDUCED 19 homolog 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484501 PE=3 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81 Identity = 163/195 (83.59%), Postives = 165/195 (84.62%), Query Frame = 0
BLAST of Lsi01G002970 vs. ExPASy TrEMBL
Match: A0A6J1CL48 (protein DEHYDRATION-INDUCED 19 homolog 4-like OS=Momordica charantia OX=3673 GN=LOC111012438 PE=3 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80 Identity = 160/194 (82.47%), Postives = 165/194 (85.05%), Query Frame = 0
BLAST of Lsi01G002970 vs. NCBI nr
Match: XP_038882149.1 (protein DEHYDRATION-INDUCED 19-like isoform X2 [Benincasa hispida]) HSP 1 Score: 321.6 bits (823), Expect = 4.1e-84 Identity = 168/196 (85.71%), Postives = 169/196 (86.22%), Query Frame = 0
BLAST of Lsi01G002970 vs. NCBI nr
Match: XP_038882145.1 (protein DEHYDRATION-INDUCED 19-like isoform X1 [Benincasa hispida] >XP_038882146.1 protein DEHYDRATION-INDUCED 19-like isoform X1 [Benincasa hispida] >XP_038882148.1 protein DEHYDRATION-INDUCED 19-like isoform X1 [Benincasa hispida]) HSP 1 Score: 319.3 bits (817), Expect = 2.0e-83 Identity = 167/195 (85.64%), Postives = 168/195 (86.15%), Query Frame = 0
BLAST of Lsi01G002970 vs. NCBI nr
Match: XP_038882150.1 (protein DEHYDRATION-INDUCED 19 homolog 4-like isoform X3 [Benincasa hispida] >XP_038882151.1 protein DEHYDRATION-INDUCED 19 homolog 4-like isoform X3 [Benincasa hispida] >XP_038882152.1 protein DEHYDRATION-INDUCED 19 homolog 4-like isoform X3 [Benincasa hispida]) HSP 1 Score: 319.3 bits (817), Expect = 2.0e-83 Identity = 167/195 (85.64%), Postives = 168/195 (86.15%), Query Frame = 0
BLAST of Lsi01G002970 vs. NCBI nr
Match: KAE8647696.1 (hypothetical protein Csa_003457 [Cucumis sativus]) HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82 Identity = 165/196 (84.18%), Postives = 167/196 (85.20%), Query Frame = 0
BLAST of Lsi01G002970 vs. NCBI nr
Match: KAG7026560.1 (Protein DEHYDRATION-INDUCED 19, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82 Identity = 161/185 (87.03%), Postives = 163/185 (88.11%), Query Frame = 0
BLAST of Lsi01G002970 vs. TAIR 10
Match: AT3G06760.1 (Drought-responsive family protein ) HSP 1 Score: 83.6 bits (205), Expect = 1.7e-16 Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 0
BLAST of Lsi01G002970 vs. TAIR 10
Match: AT5G26990.1 (Drought-responsive family protein ) HSP 1 Score: 77.8 bits (190), Expect = 9.5e-15 Identity = 59/182 (32.42%), Postives = 95/182 (52.20%), Query Frame = 0
BLAST of Lsi01G002970 vs. TAIR 10
Match: AT3G05700.1 (Drought-responsive family protein ) HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14 Identity = 47/160 (29.38%), Postives = 80/160 (50.00%), Query Frame = 0
BLAST of Lsi01G002970 vs. TAIR 10
Match: AT1G56280.2 (drought-induced 19 ) HSP 1 Score: 75.5 bits (184), Expect = 4.7e-14 Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = 0
BLAST of Lsi01G002970 vs. TAIR 10
Match: AT1G56280.1 (drought-induced 19 ) HSP 1 Score: 75.1 bits (183), Expect = 6.2e-14 Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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