Lsi01G002610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G002610
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 2343848 .. 2345876 (-)
RNA-Seq ExpressionLsi01G002610
SyntenyLsi01G002610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCTTTATGTACGGCATTGAATTGGTACTCGGAACCGTATTATATCATTACAAACTCCAAGTTGTCAATTAGGTTCAGCCTCTAGAGTAATATCAATGTCTTGGGACCATTTATTGCAGAATATTAGGTCATGGTAGGCTGTAAAGCAAATTCAGTTAAAGGAGGATAAAAATGCTAATATTTTTTTGTGAAAACAAGATAGCGTTCCTTAGATGAAGCCGAGGATGGATACCAGCTAATTTCAGAAGCTTTCATTACTTTGGATATTTTCATTTGCCGCATGTTCTTTTCTTTCCAATCATATGATTCCCTTGTCTCCTCGCTTTCATGGTTAGTTCCGTCCAGGCTTCCTCTAGTTTTCTTAAAGCATTAAACGAATGATTTGGCATTTTCTTTTTTCTTATATATGAATGATATTCAAGATGTGGAAATAGCTGCCAAATTGCATTCACCAACTTTGTCGAAGCATTAGTAAATGAAAATTTGAATTGCAGTGTCACATAAACCACTACCTCTTGATAATACCATGTATTCATCTCATTAGAGGATAACAAAAACAATCGTCCCTGACGAGGATTGAGGAGAAAAGTTCTAGCACTTAGGTAGTATGGGATGGTTACTGGTTACTGGTGAGTGGGTGATTTCTATTCATATTTAATTACATTATTAGTTGTTTTAATTCGTTTTAGGTTATTATAAGTTTCTTTTTTGAACTTTGCGACTTGTGCGTGTTTATTTAATCTTGTAATTTAAGAGTTCAAACTTCAAAAAATTTCTTAAGTTTCTGAACGTTTTAAGTTGGCCATAGAATCTTGATACTTTCAAAAAGTTTCTAAAAAAATTTAAGCAAGTGGTTTTAAATTTTAGGTTTAATAGATCCCTCTTTTACCTCATTCCTTTGCTTTCCTAATGATTAAACTCCCTTGTAATAAGCACAATTAACCGGTTAAAATAATATAATTTTGACCTAAAGTTAGAGGTTCGAAATTTCTATCCAAGATATTGTTGAACCAAATGAAGAAATAATAATAATAATAAAAAATCATACCATTGGTGATTGTTATATGAAATTATTTTTCACGATATAATAATACTAAAATTATTTTATTTTTAGGATTGAGTATGGAAAGCTTGGTGAACTAGTTTGAGACAGGGGCTGACCGACAGTTAAGAAAGTGTATCCAAAGGCCTCTTCTATAAAAAAATAATGACAATAAAGTCTTGGAGATCACTTTATAAAATTAATTAGGATGTATTCTTGTGTAGACCATATTTGTTTTGTTAGGCTTCACCTTGAGTCATTCGTTGCTAATTGCTTTGCCTAACTAATCCCAATTAGAATTACATTTCCCTTTTTTAGTGAGTCAAGTATTGAATATTGATCAACACACATTACACAAGAGTTTAAAACTCTCAAAATTTTCTGGTTAATTGGTGCGATAGATATCATGTTAACACTATGTAAGAGGACAAGTTTGAATTCTTTAAGTCGAACCAATAAATTCAGTTATTAAAAAAGTAAAGATGGTTTTGGCGAGTATAAAAACCTGCCATATCCCAAGACTACTTAACACATCGCTACAAACTGTTGCTTCAAATACCAAACAGATATTATACAGCAATGGCCAAGTTTAGCTTGTGGGTATGCCTAATCTTGTTGGCCTCCTACTGTTTTGCAGGCTCTGATTCTCGACCACTTCAACCAAACTTTGCGGCTATGTCATATCGGCCAGCGCTGTTGGGTTCCAAAGACAACTTTCACATTGCGCTGGTCGCCGTCGAAGACTCAGGAAACATTCGTCAACGTGGGGTGGCGCGCCTGTCACCAGGAGGCCCTGATCCCCGCCACCATTAATCTTCAGAATCCTTCCCCATGTGTGTGCTGTAAGAGAAGTTAGTCGAGCAAGCTCGAACTCTGTTTGAACCGTTTGATGTAGGAGTCTGGAACTAAAAATTGTGATTTCACGATGAATAAGTTTTCGTCTTTTTGACAGTAATGGCAAGTTCTATTTTTTTTCTTCTCA

mRNA sequence

ATGGGCTCTGATTCTCGACCACTTCAACCAAACTTTGCGGCTATGTCATATCGGCCAGCGCTGTTGGGTTCCAAAGACAACTTTCACATTGCGCTGGTCGCCGTCGAAGACTCAGGAAACATTCGTCAACGTGGGGTGGCGCGCCTGTCACCAGGAGGCCCTGATCCCCGCCACCATTAATCTTCAGAATCCTTCCCCATGTGTGTGCTGTAAGAGAAGTTAGTCGAGCAAGCTCGAACTCTGTTTGAACCGTTTGATGTAGGAGTCTGGAACTAAAAATTGTGATTTCACGATGAATAAGTTTTCGTCTTTTTGACAGTAATGGCAAGTTCTATTTTTTTTCTTCTCA

Coding sequence (CDS)

ATGGGCTCTGATTCTCGACCACTTCAACCAAACTTTGCGGCTATGTCATATCGGCCAGCGCTGTTGGGTTCCAAAGACAACTTTCACATTGCGCTGGTCGCCGTCGAAGACTCAGGAAACATTCGTCAACGTGGGGTGGCGCGCCTGTCACCAGGAGGCCCTGATCCCCGCCACCATTAA

Protein sequence

MGSDSRPLQPNFAAMSYRPALLGSKDNFHIALVAVEDSGNIRQRGVARLSPGGPDPRHH
Homology
[Close]
BLAST of Lsi01G002610 vs. ExPASy TrEMBL
Match: A0A0A0KNI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518900 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 2  GSDSRPLQPNFAAMSYRPALLGSKDNFHIALVAVEDSGNIRQRGVARLSPGGPDPRHH 60
          GS+SR L+P  AA S+RPALLGS+DNFHI +VAVE SG+I QRGVARLSPGGPDPRHH
Sbjct: 20 GSESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH 77

[Close]
BLAST of Lsi01G002610 vs. ExPASy TrEMBL
Match: A0A5A7UEP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 2  GSDSRPLQPNFAAMSYRPALLGSKDNFHIALVAVEDSGNIRQRGVARLSPGGPDPRHH 60
          GS+SR L+P  AA S+RPALLGS+DNFHI LVAVE S +I QRGVARLSPGGPDPRHH
Sbjct: 20 GSESRLLEPKLAARSHRPALLGSRDNFHIGLVAVEGSESIPQRGVARLSPGGPDPRHH 77

[Close]
BLAST of Lsi01G002610 vs. ExPASy TrEMBL
Match: A0A0A0KLM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518910 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-10
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 3   SDSRPLQ-PNFAAMSYRPALLGSKDNFHIALVA-VEDSGNIRQRGVARLSPGGPDPRHH 60
           S+SR LQ  +F A SY+PALLGSK NF +ALVA VED G I QR  AR SPGGPDP HH
Sbjct: 67  SNSRLLQSADFEAKSYKPALLGSKHNFQLALVAVVEDFGTIHQREAARQSPGGPDPHHH 125

[Close]
BLAST of Lsi01G002610 vs. NCBI nr
Match: KAE8647711.1 (hypothetical protein Csa_003452 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 3    SDSRPLQPNFAAMSYRPALLGSKDNFHIALVAVEDSGNIRQRGVARLSPGGPDPRHH 60
            S+SR L+P  AA S+RPALLGS+DNFHI +VAVE SG+I QRGVARLSPGGPDPRHH
Sbjct: 965  SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGSGSIPQRGVARLSPGGPDPRHH 1021

[Close]
BLAST of Lsi01G002610 vs. NCBI nr
Match: KAA0052636.1 (hypothetical protein E6C27_scaffold120G002460 [Cucumis melo var. makuwa] >TYK13190.1 hypothetical protein E5676_scaffold255G008020 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 3.6e-16
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 2  GSDSRPLQPNFAAMSYRPALLGSKDNFHIALVAVEDSGNIRQRGVARLSPGGPDPRHH 60
          GS+SR L+P  AA S+RPALLGS+DNFHI LVAVE S +I QRGVARLSPGGPDPRHH
Sbjct: 20 GSESRLLEPKLAARSHRPALLGSRDNFHIGLVAVEGSESIPQRGVARLSPGGPDPRHH 77

[Close]
BLAST of Lsi01G002610 vs. NCBI nr
Match: KAG6581347.1 (hypothetical protein SDJN03_21349, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 8.0e-16
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 2   GSDSRPL-----QPNFAAMSYRPALLGSKDNFHIALVAVEDSGNIRQRGVARLSPGGPDP 60
           G+DSR L     +PN  A +YRPALLGSK+NFHI LVAVE SG+I QRGVARLSPGGPDP
Sbjct: 692 GADSRRLVGFNSEPNVPAKTYRPALLGSKENFHIGLVAVEGSGSIHQRGVARLSPGGPDP 751

[Close]
BLAST of Lsi01G002610 vs. NCBI nr
Match: KAE8647712.1 (hypothetical protein Csa_003203 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 3  SDSRPLQ-PNFAAMSYRPALLGSKDNFHIALVA-VEDSGNIRQRGVARLSPGGPDPRHH 60
          S+SR LQ  +F A SY+PALLGSK NF +ALVA VED G I QR  AR SPGGPDP HH
Sbjct: 22 SNSRLLQSADFEAKSYKPALLGSKHNFQLALVAVVEDFGTIHQREAARQSPGGPDPHHH 80

The following BLAST results are available for this feature:
BLAST of Lsi01G002610 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G002610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNI42.1e-1777.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518900 PE=4 SV=1[more]
A0A5A7UEP51.7e-1677.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KLM55.4e-1067.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518910 PE=4 SV=1[more]
BLAST of Lsi01G002610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647711.12.8e-1677.19hypothetical protein Csa_003452 [Cucumis sativus][more]
KAA0052636.13.6e-1677.59hypothetical protein E6C27_scaffold120G002460 [Cucumis melo var. makuwa] >TYK131... [more]
KAG6581347.18.0e-1673.02hypothetical protein SDJN03_21349, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647712.11.1e-0967.80hypothetical protein Csa_003203 [Cucumis sativus][more]
BLAST of Lsi01G002610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G002610.1Lsi01G002610.1mRNA