Lsi01G002600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G002600
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 2341139 .. 2341345 (-)
RNA-Seq ExpressionLsi01G002600
SyntenyLsi01G002600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTGGCCTCCTACTGTTTTGTCGGCTCTGTTTCTCGACAACTTCAACCAAAATTTGCGACTGAGTTATATCGCCCAGCGCTGTTGGGTTCCAAAGACAGCTTTCACATTGCCCTGATCGCCGACGAAGACTCGGCCGGAACCATTCATAAACGAGAGGTGGCGCGTCAGTCACCGGGAGGCCCTGATCCCCGCCACCACTAA

mRNA sequence

ATGTTGTTGGCCTCCTACTGTTTTGTCGGCTCTGTTTCTCGACAACTTCAACCAAAATTTGCGACTGAGTTATATCGCCCAGCGCTGTTGGGTTCCAAAGACAGCTTTCACATTGCCCTGATCGCCGACGAAGACTCGGCCGGAACCATTCATAAACGAGAGGTGGCGCGTCAGTCACCGGGAGGCCCTGATCCCCGCCACCACTAA

Coding sequence (CDS)

ATGTTGTTGGCCTCCTACTGTTTTGTCGGCTCTGTTTCTCGACAACTTCAACCAAAATTTGCGACTGAGTTATATCGCCCAGCGCTGTTGGGTTCCAAAGACAGCTTTCACATTGCCCTGATCGCCGACGAAGACTCGGCCGGAACCATTCATAAACGAGAGGTGGCGCGTCAGTCACCGGGAGGCCCTGATCCCCGCCACCACTAA

Protein sequence

MLLASYCFVGSVSRQLQPKFATELYRPALLGSKDSFHIALIADEDSAGTIHKREVARQSPGGPDPRHH
Homology
BLAST of Lsi01G002600 vs. ExPASy TrEMBL
Match: A0A0A0KNI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518900 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.5e-16
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 1  MLLASYCFVGSVSRQLQPKFATELYRPALLGSKDSFHIALIADEDSAGTIHKREVARQSP 60
          +L+ASYCF GS SRQL+PK A + +RPALLGS+D+FHI ++A E S G+I +R VAR SP
Sbjct: 11 ILVASYCFAGSESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGS-GSIPQRGVARLSP 70

Query: 61 GGPDPRHH 69
          GGPDPRHH
Sbjct: 71 GGPDPRHH 77

BLAST of Lsi01G002600 vs. ExPASy TrEMBL
Match: A0A5A7UEP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008020 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.5e-15
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1  MLLASYCFVGSVSRQLQPKFATELYRPALLGSKDSFHIALIADEDSAGTIHKREVARQSP 60
          +LLASYCF GS SR L+PK A   +RPALLGS+D+FHI L+A E S  +I +R VAR SP
Sbjct: 11 VLLASYCFAGSESRLLEPKLAARSHRPALLGSRDNFHIGLVAVEGSE-SIPQRGVARLSP 70

Query: 61 GGPDPRHH 69
          GGPDPRHH
Sbjct: 71 GGPDPRHH 77

BLAST of Lsi01G002600 vs. ExPASy TrEMBL
Match: A0A0A0KLM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518910 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1   MLLASYCFVGSVSRQLQ-PKFATELYRPALLGSKDSFHIALIADEDSAGTIHKREVARQS 60
           +LLASY F  S SR LQ   F  + Y+PALLGSK +F +AL+A  +  GTIH+RE ARQS
Sbjct: 57  ILLASYYFAASNSRLLQSADFEAKSYKPALLGSKHNFQLALVAVVEDFGTIHQREAARQS 116

Query: 61  PGGPDPRHH 69
           PGGPDP HH
Sbjct: 117 PGGPDPHHH 125

BLAST of Lsi01G002600 vs. NCBI nr
Match: KAA0052636.1 (hypothetical protein E6C27_scaffold120G002460 [Cucumis melo var. makuwa] >TYK13190.1 hypothetical protein E5676_scaffold255G008020 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1  MLLASYCFVGSVSRQLQPKFATELYRPALLGSKDSFHIALIADEDSAGTIHKREVARQSP 60
          +LLASYCF GS SR L+PK A   +RPALLGS+D+FHI L+A E S  +I +R VAR SP
Sbjct: 11 VLLASYCFAGSESRLLEPKLAARSHRPALLGSRDNFHIGLVAVEGSE-SIPQRGVARLSP 70

Query: 61 GGPDPRHH 69
          GGPDPRHH
Sbjct: 71 GGPDPRHH 77

BLAST of Lsi01G002600 vs. NCBI nr
Match: KAE8647712.1 (hypothetical protein Csa_003203 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  MLLASYCFVGSVSRQLQ-PKFATELYRPALLGSKDSFHIALIADEDSAGTIHKREVARQS 60
          +LLASY F  S SR LQ   F  + Y+PALLGSK +F +AL+A  +  GTIH+RE ARQS
Sbjct: 12 ILLASYYFAASNSRLLQSADFEAKSYKPALLGSKHNFQLALVAVVEDFGTIHQREAARQS 71

Query: 61 PGGPDPRHH 69
          PGGPDP HH
Sbjct: 72 PGGPDPHHH 80

BLAST of Lsi01G002600 vs. NCBI nr
Match: KAE8647711.1 (hypothetical protein Csa_003452 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-11
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 11   SVSRQLQPKFATELYRPALLGSKDSFHIALIADEDSAGTIHKREVARQSPGGPDPRHH 69
            S SRQL+PK A + +RPALLGS+D+FHI ++A E S G+I +R VAR SPGGPDPRHH
Sbjct: 965  SESRQLEPKLAAKSHRPALLGSRDNFHIGMVAVEGS-GSIPQRGVARLSPGGPDPRHH 1021

BLAST of Lsi01G002600 vs. NCBI nr
Match: KAG6581347.1 (hypothetical protein SDJN03_21349, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 8   FVGSVSRQL-----QPKFATELYRPALLGSKDSFHIALIADEDSAGTIHKREVARQSPGG 67
           F G+ SR+L     +P    + YRPALLGSK++FHI L+A E S G+IH+R VAR SPGG
Sbjct: 690 FTGADSRRLVGFNSEPNVPAKTYRPALLGSKENFHIGLVAVEGS-GSIHQRGVARLSPGG 749

Query: 68  PDPRHH 69
           PDPRHH
Sbjct: 750 PDPRHH 754

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KNI44.5e-1666.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518900 PE=4 SV=1[more]
A0A5A7UEP56.5e-1566.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KLM51.0e-1260.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0052636.11.3e-1466.18hypothetical protein E6C27_scaffold120G002460 [Cucumis melo var. makuwa] >TYK131... [more]
KAE8647712.12.1e-1260.87hypothetical protein Csa_003203 [Cucumis sativus][more]
KAE8647711.15.3e-1165.52hypothetical protein Csa_003452 [Cucumis sativus][more]
KAG6581347.12.6e-1059.09hypothetical protein SDJN03_21349, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G002600.1Lsi01G002600.1mRNA