Lsi01G002560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G002560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr01: 2308012 .. 2310710 (-)
RNA-Seq Expression	Lsi01G002560
Synteny	Lsi01G002560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGAAAGTTGTCCTAATTCTAAGGCCTATGAGGCCACAATGGGCCTTAAGCCATGGGCCTCATGACCGAGGGGTCCTTTGGTCATTGGCCCATTCAACCTCCAATACCTGAAATACTTAGACATTGAGTTAAGCGTTTTTTTACTCTTAACAAAATCCAGTCCAGTCCAGTTTAGCTTTTTTGTGTGACTTTGTTAGCATACTTGTTCCGAAATGTACTGTAATAATGCAGGATTGAAAAGTGGGTGGGAAGCTTGTTTGGTAGATAACTATGGATGGTAGCCACTTAACAGTAGCAGCATATAGGCTAATTGCCATTGGCTTGTCACAAGGCCCATTCACTGATCCTCATTTCACAACCTCCTGCATTACACAGAATGACCCAACTAACTAATTTCAGTCGCAATGAACTTCATTTTGTGTTAGTCCTTTTCTTCTGCTTGTAGCTGTTGACTCCTCTGAAGCCTCTTAAGGCCATCTTCTTTCAATTCAGTTTTCTATGTCTTGAACATCATTTTCGATAGTATGATGTTTTAGTGATGACTCTATAATTTGTATTTGTTTTAATGATGTGGATACAATTTGTTATTTCAAGCATTTGATATGCACTTCTCCCTCCTCCTTTAAGGTTGGAGGTTTGATCAGGACTAAAAAAAGTATCATAAGTTAATTTCGATTCACCAATAATCTTGACAAGAACAACTACCATTCTTAAAATGGTGAAATCTACTGCCATCTCTAACAATGATCTCTCTTTCAAAGACTTGAGAAATTATCTTGCTTACCTCATGGCAATCGCCACAAACTCTTAAATTCTTGATAATACGAATACAGTCCCCAACTTGTGTCACCAGTAAGCCAAAAGCAATGGCCAACCTTTCACTGTGCTCTTTAATGGCAGTTTCTTTTTCTTCTTCCTCAATGTCATGCAGAACTGATGAAACATTTGCTGTGTATCCTGCTGCTGCTATTCTTACTCCAATTATCTCCAACATCTTGTAGATCTCAGTAGATCGCTCATGCTCCTTATCTCCGGCGACAAATCGGTGAACTCTTCCTTCTGCTTCAATCAAGCTCCAGCCTGCAATTTTGTTAGAGTTTCTTTCAGCCATTAGTCTTCTAACCTTGCTTACGTCTTCCCACTTTCTTAGTCTGGCGAAGATACTAGCCAACTGGACATAATGCCCATTGTGAGTGGGATCCATTTGAATCAAGTTGCTCCCAATCTCTTCACCCAGTTCTATAAATCCGTGAACCTTGCAAGAACCAAGCACCGTTGCCCACAGGACAGGGTCCGGAGGAGCAGGCATCCTGTTAATCATTTCTACAGCATCATAAACGAACCCGGCACGGCTTAAGAGATCAACCATGCAACCATAGTGTTCCATCTCTGGTTCAAGGCCATATGTGTCCGTCATTAGCTTAAAGAAGCGTCTTCCCTCGCTGACTAAACCAGCTCTGCTACACGCATTCAAGACTCCAATGAATGTCACGTTGACTGGGTAGAAACCCTGTGTTAAAAACTTTTCAAATAATGCAAGCGCTTCTGGCGCAAGGCCATGCGATGCTAGCCCACAAATCATAACATTCCAAGACCATTTATCCTTCTCAGGCATTCTGTCAAACAAGAATCTGGACTCATCAATACATCCGCACTTAGCATACATGTCAACTAGTGCTGTGCCAAGAGAAGCAGTCATTGGGAATCTTAACGAGTCTGCAATAGAATGGATCATTTTCCCATACTCAAGCATACCAAGCTGGGCTGCTGCTGCGAGCAAGGACACCAATATTGCCTCATTCGGTCTCATTTTTTGCTCTCCCATCTCTTTGAAGTAGTCTAACGCCTTTTCCAATTCCCCATTTTGAACACACCCAGATATCAGCGTGCCCCATGAGATCACATCTTTCTCAGGCATTTCAACAAACAGTTTCTCTGCAACATTGATTTGTCCATCTCTAACGAAACCAGCTAACATTGAATTCCAAGATACTACATCTCGACTATTAGGAACTTCATCAAACACCTGTTTCGCAGATTCAACTCTGCAACAAGTACAATACAAGTGAATCAACGCATTTCGGATGAAAACGTCTTTGACAAAACCAAGTTTAATCACATGGGTTTGAACTTGAACCCCTTCGCGGATGGCCAAAGCGTTACTACAAGCTTGCAACATAAAGGTGAGAGTATGTTTATTAGGCGCCGCCAGAAAACTTCGGCGCATGCGCGAGTAAAGAGAAATGGACTCGAGAGGTAAGTCCCCTTTTGTGAAGCACCGTATCATGTTGTTGGTGGCAAAAACACTTGGATGAGTAATAGAATGATAAATTGACAAGGCGTACTCACAGGGCAGTGAAGAGGAAGAAATGGCAAGAAAAGCGAGGAGGTGAGCCGTGATGCGTCCATCGTCAGCAAGGCCAAAGACGACAGTACGGGCATGGGCTTGCTTAATTTGGCTGATCCCAGGTGTTGGTGGAAGACAAGAAAGAGGCGGAGGTAAGCGAGGAACAGTGGATAAGACGTGGAAATTCAATCTCTGTTTCGAATTCCAGAAGAAGAACTTAGGCCTATAGAGTAGCATAAAGAAGGATCCGTCGCAAATTCTGAAGTTTTTATTGGATTTGATTGCGGCAATAACAGCTCCTGGTCCTATAGATTACATTTTCTCAGGCATTTCATCGAACATCTGA

mRNA sequence

ATGTATTCCCCAACTTGTGTCACCAGTAAGCCAAAAGCAATGGCCAACCTTTCACTGTGCTCTTTAATGGCAGTTTCTTTTTCTTCTTCCTCAATGTCATGCAGAACTGATGAAACATTTGCTGTGTATCCTGCTGCTGCTATTCTTACTCCAATTATCTCCAACATCTTTAGATCGCTCATGCTCCTTATCTCCGGCGACAAATCGGTGAACTCTTCCTTCTGCTTCAATCAAGCTCCAGCCTGCAATTTTTCTGGCGAAGATACTAGCCAACTGGACATAATGCCCATTGTGAGTGGGATCCATTTGAATCAAGTTGCTCCCAATCTCTTCACCCAGTTCTATAAATCCGTGAACCTTGCAAGAACCAAGCACCGTTGCCCACAGGACAGGGTCCGGAGGAGCAGGCATCCTTGTTCCATCTCTGGTTCAAGGCCATATGTGTCCGTCATTAGCTTAAAGAAGCGTCTTCCCTCGCTGACTAAACCAGCTCTGCTACACGCATTCAAGACTCCAATGAATGTCACGTTGACTGGCGCTTCTGGCGCAAGGCCATGCGATGCTAGCCCACAAATCATAACATTCCAAGACCATTTATCCTTCTCAGGCATTCTGTCAAACAAGAATCTGGACTCATCAATACATCCGCACTTAGCATACATGTCAACTAGTGCTGTGCCAAGAGAAGCAGTCATTGGGAATCTTAACGAGTCTGCAATAGAATGGATCATTTTCCCATACTCAAGCATACCAAGCTGGGCTGCTGCTGCGAGCAAGGACACCAATATTGCCTCATTCGGTCTCATTTTTTGCTCTCCCATCTCTTTGAAGAACTTCATCAAACACCTGTTTCGCAGATTCAACTCTGCAACAAGTACAATACAAGTGAATCAACGCATTTCGGATGAAAACGTCTTTGACAAAACCAAGTTTAATCACATGGGTTTGAACTTGAACCCCTTCGCGGATGGCCAAAGCGTTACTACAAGCTTGCAACATAAAGGTGAGAGTATGTTTATTAGGCGCCGCCAGAAAACTTCGGCGCATGCGCGAGTAAAGAGAAATGGACTCGAGAGAGGAAGAAATGGCAAGAAAAGCGAGGAGGTGAGCCGTGATGCGTCCATCGTCAGCAAGGCCAAAGACGACAGTACGGGCATGGGCTTGCTTAATTTGGCTGATCCCAGGTGTTGGTGGAAGACAAGAAAGAGGCGGAGCATAAAGAAGGATCCGTCGCAAATTCTGAAGTTTTTATTGGATTTGATTGCGGCAATAACAGCTCCTGGTCCTATAGATTACATTTTCTCAGGCATTTCATCGAACATCTGA

Coding sequence (CDS)

ATGTATTCCCCAACTTGTGTCACCAGTAAGCCAAAAGCAATGGCCAACCTTTCACTGTGCTCTTTAATGGCAGTTTCTTTTTCTTCTTCCTCAATGTCATGCAGAACTGATGAAACATTTGCTGTGTATCCTGCTGCTGCTATTCTTACTCCAATTATCTCCAACATCTTTAGATCGCTCATGCTCCTTATCTCCGGCGACAAATCGGTGAACTCTTCCTTCTGCTTCAATCAAGCTCCAGCCTGCAATTTTTCTGGCGAAGATACTAGCCAACTGGACATAATGCCCATTGTGAGTGGGATCCATTTGAATCAAGTTGCTCCCAATCTCTTCACCCAGTTCTATAAATCCGTGAACCTTGCAAGAACCAAGCACCGTTGCCCACAGGACAGGGTCCGGAGGAGCAGGCATCCTTGTTCCATCTCTGGTTCAAGGCCATATGTGTCCGTCATTAGCTTAAAGAAGCGTCTTCCCTCGCTGACTAAACCAGCTCTGCTACACGCATTCAAGACTCCAATGAATGTCACGTTGACTGGCGCTTCTGGCGCAAGGCCATGCGATGCTAGCCCACAAATCATAACATTCCAAGACCATTTATCCTTCTCAGGCATTCTGTCAAACAAGAATCTGGACTCATCAATACATCCGCACTTAGCATACATGTCAACTAGTGCTGTGCCAAGAGAAGCAGTCATTGGGAATCTTAACGAGTCTGCAATAGAATGGATCATTTTCCCATACTCAAGCATACCAAGCTGGGCTGCTGCTGCGAGCAAGGACACCAATATTGCCTCATTCGGTCTCATTTTTTGCTCTCCCATCTCTTTGAAGAACTTCATCAAACACCTGTTTCGCAGATTCAACTCTGCAACAAGTACAATACAAGTGAATCAACGCATTTCGGATGAAAACGTCTTTGACAAAACCAAGTTTAATCACATGGGTTTGAACTTGAACCCCTTCGCGGATGGCCAAAGCGTTACTACAAGCTTGCAACATAAAGGTGAGAGTATGTTTATTAGGCGCCGCCAGAAAACTTCGGCGCATGCGCGAGTAAAGAGAAATGGACTCGAGAGAGGAAGAAATGGCAAGAAAAGCGAGGAGGTGAGCCGTGATGCGTCCATCGTCAGCAAGGCCAAAGACGACAGTACGGGCATGGGCTTGCTTAATTTGGCTGATCCCAGGTGTTGGTGGAAGACAAGAAAGAGGCGGAGCATAAAGAAGGATCCGTCGCAAATTCTGAAGTTTTTATTGGATTTGATTGCGGCAATAACAGCTCCTGGTCCTATAGATTACATTTTCTCAGGCATTTCATCGAACATCTGA

Protein sequence

MYSPTCVTSKPKAMANLSLCSLMAVSFSSSSMSCRTDETFAVYPAAAILTPIISNIFRSLMLLISGDKSVNSSFCFNQAPACNFSGEDTSQLDIMPIVSGIHLNQVAPNLFTQFYKSVNLARTKHRCPQDRVRRSRHPCSISGSRPYVSVISLKKRLPSLTKPALLHAFKTPMNVTLTGASGARPCDASPQIITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVPREAVIGNLNESAIEWIIFPYSSIPSWAAAASKDTNIASFGLIFCSPISLKNFIKHLFRRFNSATSTIQVNQRISDENVFDKTKFNHMGLNLNPFADGQSVTTSLQHKGESMFIRRRQKTSAHARVKRNGLERGRNGKKSEEVSRDASIVSKAKDDSTGMGLLNLADPRCWWKTRKRRSIKKDPSQILKFLLDLIAAITAPGPIDYIFSGISSNI

Homology

[Close]

BLAST of Lsi01G002560 vs. ExPASy TrEMBL
Match: A0A7I8IC34 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_01001514 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-06
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 157 LPSLTKPALLHAFKTPMNVTLTGASGAR-------------PCDASPQIITFQDHLSFSG 216
           +P  T+PA + A +TPM VT  G +  R             P  ASP++ T Q+  SFSG
Sbjct: 1   MPVSTRPAWVQAERTPMTVTSLGRTPRRSISRKLARALRGCPFVASPEMRTVQETTSFSG 60

Query: 217 ILSNKNLDSSIHPHLAYMSTSAVPREAV 232
           I SN  L S++ PHLAYMS  A+PR+ V
Sbjct: 61  IRSNTALASAMQPHLAYMSARALPRKRV 88

[Close]

BLAST of Lsi01G002560 vs. ExPASy TrEMBL
Match: A0A7I8LGH7 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019821 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-06
Identity = 41/84 (48.81%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 157 LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSG 216
           LPS T PA   A  TP+ V   G             AS  RPC ASPQII  Q     SG
Sbjct: 7   LPSSTNPAWQQALSTPVKVISLGLTPCSFMRLKKAMASSPRPCVASPQIIALQGMTFLSG 66

Query: 217 ILSNKNLDSSIHPHLAYMSTSAVP 228
           IL N  L    HP LAYMSTSAVP
Sbjct: 67  ILWNTKLALLRHPDLAYMSTSAVP 90

[Close]

BLAST of Lsi01G002560 vs. ExPASy TrEMBL
Match: A0A7I8JP89 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_15018396 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-06
Identity = 41/84 (48.81%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 157 LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSG 216
           LPS T PA   A  TP+ V   G             AS  RPC ASPQII  Q     SG
Sbjct: 7   LPSSTNPAWQQALSTPVKVISLGLTPCSFMRLKKAMASSPRPCVASPQIIALQGMTFLSG 66

Query: 217 ILSNKNLDSSIHPHLAYMSTSAVP 228
           IL N  L    HP LAYMSTSAVP
Sbjct: 67  ILWNTKLALLRHPDLAYMSTSAVP 90

[Close]

BLAST of Lsi01G002560 vs. ExPASy TrEMBL
Match: A0A0A9G1U2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-04
Identity = 38/100 (38.00%), Postives = 44/100 (44.00%), Query Frame = 0


Query: 146 PYVSVISLKKRLPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQI 205
           PY   +  K   P  TKPA +HA   PM    +G             AS   PC A P I
Sbjct: 2   PYFFTMESKSSRPLSTKPACVHAHNAPMKAMSSGLTPELSICENSVNASEPLPCIARPFI 61

Query: 206 ITFQDHLSFSGILSNKNLDSSIHPHLAYMSTSAVPREAVI 233
           +  Q     S I SN  + S   PHL YMST AVP+  VI
Sbjct: 62  MVVQASTFLSFIPSNTFIASCTSPHLEYMSTKAVPKNTVI 101

[Close]

BLAST of Lsi01G002560 vs. NCBI nr
Match: CAA2632815.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-06
Identity = 41/84 (48.81%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 157 LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSG 216
           LPS T PA   A  TP+ V   G             AS  RPC ASPQII  Q     SG
Sbjct: 7   LPSSTNPAWQQALSTPVKVISLGLTPCSFMRLKKAMASSPRPCVASPQIIALQGMTFLSG 66

Query: 217 ILSNKNLDSSIHPHLAYMSTSAVP 228
           IL N  L    HP LAYMSTSAVP
Sbjct: 67  ILWNTKLALLRHPDLAYMSTSAVP 90

[Close]

BLAST of Lsi01G002560 vs. NCBI nr
Match: CAA7409143.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-06
Identity = 41/84 (48.81%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 157 LPSLTKPALLHAFKTPMNVTLTG-------------ASGARPCDASPQIITFQDHLSFSG 216
           LPS T PA   A  TP+ V   G             AS  RPC ASPQII  Q     SG
Sbjct: 7   LPSSTNPAWQQALSTPVKVISLGLTPCSFMRLKKAMASSPRPCVASPQIIALQGMTFLSG 66

Query: 217 ILSNKNLDSSIHPHLAYMSTSAVP 228
           IL N  L    HP LAYMSTSAVP
Sbjct: 67  ILWNTKLALLRHPDLAYMSTSAVP 90

[Close]

BLAST of Lsi01G002560 vs. NCBI nr
Match: CAA2615158.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-06
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 157 LPSLTKPALLHAFKTPMNVTLTGASGAR-------------PCDASPQIITFQDHLSFSG 216
           +P  T+PA + A +TPM VT  G +  R             P  ASP++ T Q+  SFSG
Sbjct: 1   MPVSTRPAWVQAERTPMTVTSLGRTPRRSISRKLARALRGCPFVASPEMRTVQETTSFSG 60

Query: 217 ILSNKNLDSSIHPHLAYMSTSAVPREAV 232
           I SN  L S++ PHLAYMS  A+PR+ V
Sbjct: 61  IRSNTALASAMQPHLAYMSARALPRKRV 88

[Close]

BLAST of Lsi01G002560 vs. NCBI nr
Match: KAF7806299.1 (basic leucine zipper 43-like [Senna tora])

HSP 1 Score: 57.4 bits (137), Expect = 3.7e-04
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 158 PSLTKPALLHAFKTPMNVTLTG-----------ASGARPCD--ASPQIITFQDHLSFSGI 217
           PS+TKPA LHA K+P+NV  +G           +  +RPC     P IITF D  SFS  
Sbjct: 208 PSVTKPAWLHAIKSPINVKESGLHPELCINSNNSIASRPCPLIPYPAIITFHDASSFSFT 267

Query: 218 LSNKNLDSSIHPHLAYMSTSAV 227
           LS +  DSS+ P  AYMS   +
Sbjct: 268 LSKRLRDSSMEPLFAYMSIKMI 289

The following BLAST results are available for this feature:

BLAST of Lsi01G002560 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G002560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7I8IC34	3.2e-06	43.18	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_01001514 PE=4 SV...	[more]
A0A7I8LGH7	3.2e-06	48.81	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019821 PE=4 SV...	[more]
A0A7I8JP89	3.2e-06	48.81	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_15018396 PE=4 SV...	[more]
A0A0A9G1U2	1.8e-04	38.00	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of Lsi01G002560 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA2632815.1	6.7e-06	48.81	unnamed protein product [Spirodela intermedia]	[more]
CAA7409143.1	6.7e-06	48.81	unnamed protein product [Spirodela intermedia]	[more]
CAA2615158.1	6.7e-06	43.18	unnamed protein product [Spirodela intermedia]	[more]
KAF7806299.1	3.7e-04	43.90	basic leucine zipper 43-like [Senna tora]	[more]

BLAST of Lsi01G002560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 351..378
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 343..378

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G002560.1	Lsi01G002560.1	mRNA