Lsi01G002400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G002400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DUF4228 domain-containing protein
Location	chr01: 2179558 .. 2180588 (+)
RNA-Seq Expression	Lsi01G002400
Synteny	Lsi01G002400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTGCGCGCGCGCATCGGCATCATTGGTAACACAAATTTTCGGAACCCAAAAGAAAAAAAAAAAAAAAGAAAAAAGAATTTCCCTTTTTTTCACTTTCGCTTTCAATATAATTTCCCTTCAAATTCTATTTCTATACATCTCTTTGATCTCTGCAACAAAAACTACATACTCTCTCTCTCTCTTTATGAGAAAACAGAACAACCAAAACAGAGATTTAAATCCCCGCCCATGAAGAACGCCATTAGATGCTGCATCTCCTGCATACTCCCATGTGGGTCTCTCGATGTCATCAGAATCGTCCATTGCAACGGCCACGTGGAGGAAATCGCCGGCACCATCCGGGCAAGTGACGTCATGAAAGCCAATCCTAAACACGTCCTCAAAAAACCCTCCTCGCCGGCGTCCGACGACCGCGTCGTCCCCAAGATCGTCATCCTCCCGCCCGACGCAGAGCTCCAACGGGGAAAAATTTACTTTCTCATGCCCCTTCCTCCAGCACCGGAAAAGCCCCGGTCTAAATCCCACACGAAGAAGAAGAAGAAGGAATTACCCGGAACCGCCGTGGGTTCGGATATATCGGTGACGAATTTGGTGGTTTCGGATCGGTACCTGAGTGAAATTCTGTCGGAGAAATTGACGACGGCTCAGAAGGATAAGCGGCGGGGGCGGGTCGGAGTGTGGAGGCCTCATTTGGAGAGCATTTCCGAGTTCCCAACTGATCTTTAAATGGAATTCGAGGGGGGTTTTTTCTTCTTCCCGAAATTGATTTTTTTTTTTAAAAAAAAAAAAAAAGTTATAAATCTCTCTGTTTGATTATAAATATATATATATGTGTGTGCGCGCGCGCGCATAGGCATCATTGGTAACACAAATTTTCGGAACCCAAAAGAAAAAAAAAAAAAAAAAAAAAGTTATAAATCTCTCTGTTTGATTATAAATATATATGTGTACAAATGAAGTTGAGGGAAAATTATGATTCTACTGCCGGTGGATTACAAGTGAAGATCAGGGAATGGAAGATGTAA

mRNA sequence

ATGTGTAAAACAGAACAACCAAAACAGAGATTTAAATCCCCGCCCATGAAGAACGCCATTAGATGCTGCATCTCCTGCATACTCCCATGTGGGTCTCTCGATGTCATCAGAATCGTCCATTGCAACGGCCACGTGGAGGAAATCGCCGGCACCATCCGGGCAAGTGACGTCATGAAAGCCAATCCTAAACACGTCCTCAAAAAACCCTCCTCGCCGGCGTCCGACGACCGCGTCGTCCCCAAGATCGTCATCCTCCCGCCCGACGCAGAGCTCCAACGGGGAAAAATTTACTTTCTCATGCCCCTTCCTCCAGCACCGGAAAAGCCCCGGTCTAAATCCCACACGAAGAAGAAGAAGAAGGAATTACCCGGAACCGCCGTGGGTTCGGATATATCGGTGACGAATTTGGTGGTTTCGGATCGGTACCTGAGTGAAATTCTGTCGGAGAAATTGACGACGGCTCAGAAGGATAAGCGGCGGGGGCGGTTGAGGGAAAATTATGATTCTACTGCCGGTGGATTACAAGTGAAGATCAGGGAATGGAAGATGTAA

Coding sequence (CDS)

ATGTGTAAAACAGAACAACCAAAACAGAGATTTAAATCCCCGCCCATGAAGAACGCCATTAGATGCTGCATCTCCTGCATACTCCCATGTGGGTCTCTCGATGTCATCAGAATCGTCCATTGCAACGGCCACGTGGAGGAAATCGCCGGCACCATCCGGGCAAGTGACGTCATGAAAGCCAATCCTAAACACGTCCTCAAAAAACCCTCCTCGCCGGCGTCCGACGACCGCGTCGTCCCCAAGATCGTCATCCTCCCGCCCGACGCAGAGCTCCAACGGGGAAAAATTTACTTTCTCATGCCCCTTCCTCCAGCACCGGAAAAGCCCCGGTCTAAATCCCACACGAAGAAGAAGAAGAAGGAATTACCCGGAACCGCCGTGGGTTCGGATATATCGGTGACGAATTTGGTGGTTTCGGATCGGTACCTGAGTGAAATTCTGTCGGAGAAATTGACGACGGCTCAGAAGGATAAGCGGCGGGGGCGGTTGAGGGAAAATTATGATTCTACTGCCGGTGGATTACAAGTGAAGATCAGGGAATGGAAGATGTAA

Protein sequence

MCKTEQPKQRFKSPPMKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASDDRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKELPGTAVGSDISVTNLVVSDRYLSEILSEKLTTAQKDKRRGRLRENYDSTAGGLQVKIREWKM

Homology

[Close]

BLAST of Lsi01G002400 vs. ExPASy TrEMBL
Match: A0A5D3CP55 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008230 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.6e-68
Identity = 138/150 (92.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASD 75
           MKNAIRCCISCILPCGSLDVIRIVHC+GHV+EIAG+IRASDVMKANPKHVLKKPSSP SD
Sbjct: 1   MKNAIRCCISCILPCGSLDVIRIVHCDGHVQEIAGSIRASDVMKANPKHVLKKPSSPTSD 60

Query: 76  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKE--LPGTAVGSDISV 135
           DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKS TKKKKKE  LPGT VGS ISV
Sbjct: 61  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSLTKKKKKELPLPGTGVGSSISV 120

Query: 136 TNLVVSDRYLSEILSEKLTTAQKDKRRGRL 164
           TNLVVSD+YLSEILSEKLTT QKDKRRGR+
Sbjct: 121 TNLVVSDQYLSEILSEKLTTVQKDKRRGRV 150

[Close]

BLAST of Lsi01G002400 vs. ExPASy TrEMBL
Match: A0A0A0KI99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519600 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 8.0e-68
Identity = 137/150 (91.33%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASD 75
           MKNAIRCC+SCILPCGSLDVIRIVHC+GHV+EIAG+IRASDVMKANPKHVLKKPSSP SD
Sbjct: 1   MKNAIRCCLSCILPCGSLDVIRIVHCDGHVQEIAGSIRASDVMKANPKHVLKKPSSPTSD 60

Query: 76  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKE--LPGTAVGSDISV 135
           DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKS +KKKKKE  LPGT VGS ISV
Sbjct: 61  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSLSKKKKKELPLPGTGVGSGISV 120

Query: 136 TNLVVSDRYLSEILSEKLTTAQKDKRRGRL 164
           TNLVVSDRYLSEILSEKLTT QKDKRRGR+
Sbjct: 121 TNLVVSDRYLSEILSEKLTTVQKDKRRGRV 150

[Close]

BLAST of Lsi01G002400 vs. ExPASy TrEMBL
Match: A0A6J1EJJ7 (uncharacterized protein LOC111433184 OS=Cucurbita moschata OX=3662 GN=LOC111433184 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.9e-62
Identity = 130/151 (86.09%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 13  SPPMKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSP 72
           S PMKNAIRCCISCI PCGSLDVIRIVHCNGHVEEIAG+IRASD+MKANPKHVLKKPSSP
Sbjct: 39  SAPMKNAIRCCISCIFPCGSLDVIRIVHCNGHVEEIAGSIRASDIMKANPKHVLKKPSSP 98

Query: 73  ASDDRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKELPGTAVGSDIS 132
            SD  VVPKIVILPPDAELQRGKIYFLMPLPP+PEK RS    KKKK+E PGT VGS IS
Sbjct: 99  -SDHGVVPKIVILPPDAELQRGKIYFLMPLPPSPEKTRS----KKKKREAPGTDVGSGIS 158

Query: 133 VTNLVVSDRYLSEILSEKLTTAQKDKRRGRL 164
           VTNLVVSDRYLS+ILSEKL+T QKDKRRGR+
Sbjct: 159 VTNLVVSDRYLSDILSEKLSTGQKDKRRGRV 184

[Close]

BLAST of Lsi01G002400 vs. ExPASy TrEMBL
Match: A0A6J1IUZ9 (uncharacterized protein LOC111478638 OS=Cucurbita maxima OX=3661 GN=LOC111478638 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.2e-61
Identity = 128/148 (86.49%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASD 75
           MKNAIRCCISCI PCGSLDVIRIVHCNGHVEEIAG+IRASD+MKANPKHVLKKPSSP SD
Sbjct: 1   MKNAIRCCISCIFPCGSLDVIRIVHCNGHVEEIAGSIRASDIMKANPKHVLKKPSSP-SD 60

Query: 76  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKELPGTAVGSDISVTN 135
             VVPKIVILPPDAELQRGKIYFLMPLPP+PEK RS    KKKK+E PGT VGS ISVTN
Sbjct: 61  HGVVPKIVILPPDAELQRGKIYFLMPLPPSPEKTRS----KKKKREAPGTDVGSGISVTN 120

Query: 136 LVVSDRYLSEILSEKLTTAQKDKRRGRL 164
           LVVSDRYLS+ILSEKL+T QKDKRRGR+
Sbjct: 121 LVVSDRYLSDILSEKLSTGQKDKRRGRV 143

[Close]

BLAST of Lsi01G002400 vs. ExPASy TrEMBL
Match: A0A6P3Z812 (uncharacterized protein LOC107410851 OS=Ziziphus jujuba OX=326968 GN=LOC107410974 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.8e-51
Identity = 114/154 (74.03%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASD 75
           MKN IRCCISCILPCG+LDVIRIVH NG VEEI+GTIRAS++MKA+PKHVLKKPSSP SD
Sbjct: 1   MKNTIRCCISCILPCGALDVIRIVHSNGRVEEISGTIRASEIMKAHPKHVLKKPSSPNSD 60

Query: 76  DRVVPKIVILPPDAELQRGKIYFLMPLPPAP--EKPRSKSHTKKKKK---ELPGTAVG-S 135
           D VVPKIVI+PPDAELQRGKIYFLMP PP P  EK R +  TKKK++   E+ G   G S
Sbjct: 61  DGVVPKIVIVPPDAELQRGKIYFLMPAPPPPTTEKTRQRPSTKKKRRSSVEMTGNNTGNS 120

Query: 136 DISVTNLVVSDRYLSEILSEKLTTAQKDKRRGRL 164
            IS+TNL++SDRYLSEILSEK++T QKD+RRGR+
Sbjct: 121 TISMTNLLISDRYLSEILSEKIST-QKDRRRGRV 153

[Close]

BLAST of Lsi01G002400 vs. NCBI nr
Match: XP_038882770.1 (uncharacterized protein LOC120073923 [Benincasa hispida])

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-69
Identity = 141/149 (94.63%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASD 75
           MKN IRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSP SD
Sbjct: 1   MKNTIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPTSD 60

Query: 76  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKS-HTKKKKKELPGTAVGSDISVT 135
           DRVVPKIVILPPDA+LQRGKIYFLMPLPPAPEKPRSKS  TKKKKKELPGT VGS ISVT
Sbjct: 61  DRVVPKIVILPPDAQLQRGKIYFLMPLPPAPEKPRSKSLTTKKKKKELPGTGVGSGISVT 120

Query: 136 NLVVSDRYLSEILSEKLTTAQKDKRRGRL 164
           NLVVSDRYLSEILSEKLTTAQKDKRRGR+
Sbjct: 121 NLVVSDRYLSEILSEKLTTAQKDKRRGRV 149

[Close]

BLAST of Lsi01G002400 vs. NCBI nr
Match: KAA0052618.1 (DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYK13210.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 267.7 bits (683), Expect = 7.4e-68
Identity = 138/150 (92.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASD 75
           MKNAIRCCISCILPCGSLDVIRIVHC+GHV+EIAG+IRASDVMKANPKHVLKKPSSP SD
Sbjct: 1   MKNAIRCCISCILPCGSLDVIRIVHCDGHVQEIAGSIRASDVMKANPKHVLKKPSSPTSD 60

Query: 76  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKE--LPGTAVGSDISV 135
           DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKS TKKKKKE  LPGT VGS ISV
Sbjct: 61  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSLTKKKKKELPLPGTGVGSSISV 120

Query: 136 TNLVVSDRYLSEILSEKLTTAQKDKRRGRL 164
           TNLVVSD+YLSEILSEKLTT QKDKRRGR+
Sbjct: 121 TNLVVSDQYLSEILSEKLTTVQKDKRRGRV 150

[Close]

BLAST of Lsi01G002400 vs. NCBI nr
Match: XP_031742479.1 (uncharacterized protein LOC101214777 [Cucumis sativus] >KGN49308.1 hypothetical protein Csa_003542 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-67
Identity = 137/150 (91.33%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASD 75
           MKNAIRCC+SCILPCGSLDVIRIVHC+GHV+EIAG+IRASDVMKANPKHVLKKPSSP SD
Sbjct: 1   MKNAIRCCLSCILPCGSLDVIRIVHCDGHVQEIAGSIRASDVMKANPKHVLKKPSSPTSD 60

Query: 76  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKE--LPGTAVGSDISV 135
           DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKS +KKKKKE  LPGT VGS ISV
Sbjct: 61  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSLSKKKKKELPLPGTGVGSGISV 120

Query: 136 TNLVVSDRYLSEILSEKLTTAQKDKRRGRL 164
           TNLVVSDRYLSEILSEKLTT QKDKRRGR+
Sbjct: 121 TNLVVSDRYLSEILSEKLTTVQKDKRRGRV 150

[Close]

BLAST of Lsi01G002400 vs. NCBI nr
Match: XP_023543275.1 (uncharacterized protein LOC111803203 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023543276.1 uncharacterized protein LOC111803203 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 7.2e-63
Identity = 131/152 (86.18%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 12  KSPPMKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSS 71
           KS PMKNAIRCCISCI PCGSLDVIRIVHCNGHVEEIAG+IRASD+MKANPKHVLKKP+S
Sbjct: 38  KSAPMKNAIRCCISCIFPCGSLDVIRIVHCNGHVEEIAGSIRASDIMKANPKHVLKKPTS 97

Query: 72  PASDDRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKELPGTAVGSDI 131
           P SD  VVPKIVILPPDAELQRGKIYFLMPLPP+PEK RSK   KKKK+E PGT VGS I
Sbjct: 98  P-SDQGVVPKIVILPPDAELQRGKIYFLMPLPPSPEKTRSK---KKKKRETPGTDVGSGI 157

Query: 132 SVTNLVVSDRYLSEILSEKLTTAQKDKRRGRL 164
           SVTNLVVSDRYLS+ILSEKL+T QKDKRRGR+
Sbjct: 158 SVTNLVVSDRYLSDILSEKLSTGQKDKRRGRV 185

[Close]

BLAST of Lsi01G002400 vs. NCBI nr
Match: XP_022925910.1 (uncharacterized protein LOC111433184 [Cucurbita moschata])

HSP 1 Score: 248.1 bits (632), Expect = 6.1e-62
Identity = 130/151 (86.09%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 13  SPPMKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSP 72
           S PMKNAIRCCISCI PCGSLDVIRIVHCNGHVEEIAG+IRASD+MKANPKHVLKKPSSP
Sbjct: 39  SAPMKNAIRCCISCIFPCGSLDVIRIVHCNGHVEEIAGSIRASDIMKANPKHVLKKPSSP 98

Query: 73  ASDDRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKELPGTAVGSDIS 132
            SD  VVPKIVILPPDAELQRGKIYFLMPLPP+PEK RS    KKKK+E PGT VGS IS
Sbjct: 99  -SDHGVVPKIVILPPDAELQRGKIYFLMPLPPSPEKTRS----KKKKREAPGTDVGSGIS 158

Query: 133 VTNLVVSDRYLSEILSEKLTTAQKDKRRGRL 164
           VTNLVVSDRYLS+ILSEKL+T QKDKRRGR+
Sbjct: 159 VTNLVVSDRYLSDILSEKLSTGQKDKRRGRV 184

[Close]

BLAST of Lsi01G002400 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 155.6 bits (392), Expect = 3.8e-38
Identity = 96/177 (54.24%), Postives = 118/177 (66.67%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPAS- 75
           MK  IRCCI+CILPCG+LDVIRIVH NGHVEEI+GTI AS++MKA+PKHVLKKPSSP S 
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 76  -DDRVV---PKIVILPPDAELQRGKIYFLMPLPPAP----------EKPRSKSHTKKKKK 135
            D+R V    KIVI+PP+AELQRGKIYFLMP   +           EK  + +  KK+ +
Sbjct: 61  HDERDVISATKIVIVPPEAELQRGKIYFLMPATKSDKCAGGGKIRREKSNANAVVKKRSQ 120

Query: 136 ---------ELPGTAVGSDISVTN-----LVVSDRYLSEILSEKLTTAQKDKRRGRL 164
                    E       +D+   N     L+ SDRYL+EILSEK+ T QKD+R+GR+
Sbjct: 121 YRRQHRDGDEKCNGGESNDVKDKNYEKDLLISSDRYLTEILSEKVAT-QKDRRKGRV 176

[Close]

BLAST of Lsi01G002400 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASD 75
           M N++RCC++C+LPCG+LD+IRIVH NGHV+EI   + A ++++ANP HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQG-- 60

Query: 76  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKELP---GTAVGSDIS 135
             VV KI+IL P++EL+RG IYFL+P    PEK ++K   + + ++ P   G  + SD  
Sbjct: 61  --VVRKILILSPESELKRGSIYFLIPDTSMPEKKKTKKRKELRCRKKPLESGNDINSDHV 120

Query: 136 VTN-------LVVSDRYLSEI-LSEKLTTAQKDKRRGR 163
            TN       L + ++YL ++ LSEK+++A K+ R  R
Sbjct: 121 STNKDLDGHCLTLCEKYLEDVMLSEKMSSAGKENRHRR 154

[Close]

BLAST of Lsi01G002400 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-28
Identity = 72/160 (45.00%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 16  MKNAIRCCISCILPCGSLDVIRIVHCNGHVEEIAGTIRASDVMKANPKHVLKKPSSPASD 75
           M N++RCC++C+LPCG+LD+IRIVH NG+VEEI  +I A ++++ANP HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQG-- 60

Query: 76  DRVVPKIVILPPDAELQRGKIYFLMPLPPAPEKPRSKSHTKKKKKEL---PGTAVGSDIS 135
             VV KI+IL P++EL+RG IYFL+P    PEK R +  T ++KK L      A G +I 
Sbjct: 61  --VVRKILILSPESELKRGSIYFLIPDSSLPEKKRRRKDTPRRKKNLQNPSADAAGREIK 120

Query: 136 VTNLVVS--DRYLSEILSEKLTTAQKDKRRGRLRENYDST 171
                V   ++YL E++S   T  +   RR   R    ST
Sbjct: 121 GDEECVKLCEKYLEEVVSSASTGKEHRHRRRHSRSASVST 156

The following BLAST results are available for this feature:

BLAST of Lsi01G002400 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G002400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CP55	3.6e-68	92.00	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0KI99	8.0e-68	91.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519600 PE=4 SV=1	[more]
A0A6J1EJJ7	2.9e-62	86.09	uncharacterized protein LOC111433184 OS=Cucurbita moschata OX=3662 GN=LOC1114331...	[more]
A0A6J1IUZ9	4.2e-61	86.49	uncharacterized protein LOC111478638 OS=Cucurbita maxima OX=3661 GN=LOC111478638...	[more]
A0A6P3Z812	1.8e-51	74.03	uncharacterized protein LOC107410851 OS=Ziziphus jujuba OX=326968 GN=LOC10741097...	[more]

BLAST of Lsi01G002400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882770.1	1.8e-69	94.63	uncharacterized protein LOC120073923 [Benincasa hispida]	[more]
KAA0052618.1	7.4e-68	92.00	DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYK13210.1 DUF4228...	[more]
XP_031742479.1	1.6e-67	91.33	uncharacterized protein LOC101214777 [Cucumis sativus] >KGN49308.1 hypothetical ...	[more]
XP_023543275.1	7.2e-63	86.18	uncharacterized protein LOC111803203 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022925910.1	6.1e-62	86.09	uncharacterized protein LOC111433184 [Cucurbita moschata]	[more]

BLAST of Lsi01G002400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29195.1	3.8e-38	54.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G30230.1	2.5e-29	44.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G06980.1	1.2e-28	45.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 21..120 e-value: 1.4E-25 score: 90.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..124
None	No IPR available	PANTHER	PTHR33052:SF136	SUBFAMILY NOT NAMED	coord: 16..163
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 16..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G002400.1	Lsi01G002400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009620	response to fungus