Lsi01G002380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G002380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr01: 2170404 .. 2172664 (+)
RNA-Seq Expression	Lsi01G002380
Synteny	Lsi01G002380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCAGACACTGTCTAAGAATCAAGATGAGTACCATTCTGGATTCAAATACACAGTGCGGTTGCAGGCTTTTCTACATCGTACATCTACAGTTCGCAAGTTTTGTATGCGTGCATTGGAAATACCAACTTTCCAAGCATGGACTTATCTACTAATCACAACTATACAACACACAGATACATTAGAGCAGATAGATAAAGGCATCAGGAATAAGGTATGACTTCTCATTCTGGTTTATGCTTGCAGAAGAATTATTCCACCCCAACTTATGAGATACTACCCCTCCAACTAAAGGTGCTGCGATTTCAAATTACCGTCTTTATCCTTATTGAAAACCAGTACATAACCGCATACATGGCTGAAAGGTTAAAATACGACTTAAGAAAAGTCAGAGTTCTTATTGATTATAAATGGACCACAAGAGTAAAGGTGGGTTTGGGATAAATGCTTCTGACCAATTCAAAGCACTTTCCAAAATTTTCATGGTATTTAGTTACTAGGTCAAAATGTGATATCGAGAAATTCTTAAACTGTGCTTTTAGAGGAAGCACAGTATTACTTTCTCTTACAATGTGGTTACAGAAGAGTATTTTACTACGAAAATACTTGTCTCAAGAGTCATCATGAACTCACCCTAAGTCTAAACACCAGTAGACAGTAGTAATTTTAGGATCACTAACCAGCCAATTGCCTATCTTGCTCTAGAATAGCCTGACTTCTGCTAAGCTCCTAATTTAGTTTTCTAGTTTTGAACCCTCCTCCTGCTGAAATGATACTTTCAAGTTGGCAACTATATAGGTTGTCTACCTCATGTTCACATAACCATGCAAGTCTAGCAGCCTAGGATTACAGTCAATATATCCAACCATAAAGTCAAAAGCAAAATATGGAGAAAATTCCATGTGAAGCATGAGCAAGGGGTGAACATTCATTCCAGGGAAATCATCTCAAGTTCGCTTCATAATGTCCAGAAAGATAACTATAACACAAAGAAAGCTAGAAGATTTAAAGCAAGAAAAATATAAGTTACAGAGCATGTCAAAAAATTATTAATGGAAGTTACAGAACAGAATACAGATCATACAAATAATAGTCTTACAATACCTCACAGGATAACGACCCTATAGCAGAGCATCCTAAGAAGCATGGACACTTGAGTTTGGCTAGTGTGTTAGTGTTTGACACGTGTCGGACACTTGGACTTGTTGGACACATATTAGACACTTGTTAGTGCAATAGATGTGTTAGAAACTAGTTGTACAAAGTCAAGATAGGAGCAACATTTGGTAGACATACAGCAAACTCTTCTTACATATACTAAGTCAACACATATATGACAAAAATAATAAAATTTGAGAGTGAAATACATCAAACTAATTTTTGAAGCATGAAAATAAATGAACTCATTGACTTTGAATTTCCTTCTTGTTTAAAATGTTATATATTTTTAAAAATGTATGTTTCAATAAACGTGTCCTTGCCGTGTCCTTGTCCTAAATTTTTAAAAGATGGCATGTCATAATGTCGCTATTGTGTCGTATCCGTATATGTGCTTCTTAGGCCGCATCTAAGATGGGCATGAAAGAGGAATCTCACAAAACGGTAGGATTCGCTTAATTCTCTAGCAGGAAGATAATAGAGATATGCTCACTGTTACATACTCAAATTGATTCCTTCAGAATGACACTAACAGCAGCACTCAACAAAAGGAATAAGGATATGTAAAGTAGATAAGAGTCTTTGAGCACTGGCAGGCATTTATTCAAGTGGGTTTCTCTGGCAGAATCATTTGAAAAAAAAAACGTACAGAGACAACATAGAAGACTAGGTAAAATAAAGATCCCAAGTTCTTGAGAAAAATAAGTTCATATTCAATCTTGAACAAAGTAAATGACTATAATAACACACTCAGTTCAATCTTGAACGAACATATATTCTGCCAACAAGTAGAGCATTATCATTTTTTGTAACACTAAAATGGCTTATTAACTTAAAACCTATGAACTGTAACATAAAAAATACATAAATTTAAAGGAAGTAGCAAAATCTTTCCTTTTCTTAGGGGGCTCTCGGGTCCGTCCCATGCTGCCATACATAAACAAGCTCATCCCATCCAGTGCTGGCAAGCAGGCCCTCAACAAGCACACTCATATCTATTCCTACGGCGAATTCAGTGTGATGATCATATCTCCCAACAAGAGCATCCTCCAACATGTAATCCCACAAACAGACAGTCATATCGTAGGAGCAGGAGGCTAA

mRNA sequence

ATGGTCCAGACACTGTCTAAGAATCAAGATGAGTACCATTCTGGATTCAAATACACAGTGCGGTTGCAGGCTTTTCTACATCGTACATCTACAGTTCGCAAGTTTTGTATGCGTGCATTGGAAATACCAACTTTCCAAGCATGGACTTATCTACTAATCACAACTATACAACACACAGATACATTAGAGCAGATAGATAAAGGCATCAGGAATAAGGTGCTGCGATTTCAAATTACCGTCTTTATCCTTATTGAAAACCAGTACATAACCGCATACATGGCTGAAAGGGGTGAACATTCATTCCAGGGAAATCATCTCAAGCATTTATTCAAGTGGGTTTCTCTGGCAGAATCATTTGAAAAAAAAAACGTACAGAGACAACATAGAAGACTAGGGGGCTCTCGGGTCCGTCCCATGCTGCCATACATAAACAAGCTCATCCCATCCAGTGCTGGCAAGCAGGCCCTCAACAAGCACACTCATATCTATTCCTACGGCGAATTCAGTGTGATGATCATATCTCCCAACAAGAGCATCCTCCAACATGTAATCCCACAAACAGACAGTCATATCGTAGGAGCAGGAGGCTAA

Coding sequence (CDS)

ATGGTCCAGACACTGTCTAAGAATCAAGATGAGTACCATTCTGGATTCAAATACACAGTGCGGTTGCAGGCTTTTCTACATCGTACATCTACAGTTCGCAAGTTTTGTATGCGTGCATTGGAAATACCAACTTTCCAAGCATGGACTTATCTACTAATCACAACTATACAACACACAGATACATTAGAGCAGATAGATAAAGGCATCAGGAATAAGGTGCTGCGATTTCAAATTACCGTCTTTATCCTTATTGAAAACCAGTACATAACCGCATACATGGCTGAAAGGGGTGAACATTCATTCCAGGGAAATCATCTCAAGCATTTATTCAAGTGGGTTTCTCTGGCAGAATCATTTGAAAAAAAAAACGTACAGAGACAACATAGAAGACTAGGGGGCTCTCGGGTCCGTCCCATGCTGCCATACATAAACAAGCTCATCCCATCCAGTGCTGGCAAGCAGGCCCTCAACAAGCACACTCATATCTATTCCTACGGCGAATTCAGTGTGATGATCATATCTCCCAACAAGAGCATCCTCCAACATGTAATCCCACAAACAGACAGTCATATCGTAGGAGCAGGAGGCTAA

Protein sequence

MVQTLSKNQDEYHSGFKYTVRLQAFLHRTSTVRKFCMRALEIPTFQAWTYLLITTIQHTDTLEQIDKGIRNKVLRFQITVFILIENQYITAYMAERGEHSFQGNHLKHLFKWVSLAESFEKKNVQRQHRRLGGSRVRPMLPYINKLIPSSAGKQALNKHTHIYSYGEFSVMIISPNKSILQHVIPQTDSHIVGAGG

Homology

[Close]

BLAST of Lsi01G002380 vs. ExPASy TrEMBL
Match: A0A059C845 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E02750 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-07
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 139 MLPYINKLIPSSAGKQALNKHTHIYSYGEFSVMIISPNKSILQHVIPQTDSHIVGA 195
           MLP INKLIP+   ++  +KH H+ +  EF V+I+ P++ IL HVIPQ   H+VGA
Sbjct: 1   MLPDINKLIPTCTSQKPFDKHAHVDADREFRVVIVPPHERILHHVIPQAHRHVVGA 56

[Close]

BLAST of Lsi01G002380 vs. ExPASy TrEMBL
Match: A0A368PFX7 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_1G020900v2 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-06
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 131 LGGSRVRPMLPYINKLIPSSAGKQALNKHTHIYSYGEFSVMIISPNKSILQHVIPQTDSH 190
           L GS + P  P ++ L+P+ AGKQ ++KH H+ S  E  V+++   + +L  V+P  D H
Sbjct: 39  LHGSGIGPERPDVDHLVPAGAGKQPVDKHAHVDSGDELGVVVVPGEQRVLGAVVPHADGH 98

Query: 191 IVGAG 196
           +VGAG
Sbjct: 99  VVGAG 103

[Close]

BLAST of Lsi01G002380 vs. ExPASy TrEMBL
Match: A0A4U6W4N3 (Uncharacterized protein OS=Setaria viridis OX=4556 GN=SEVIR_1G021000v2 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 131 LGGSRVRPMLPYINKLIPSSAGKQALNKHTHIYSYGEFSVMIISPNKSILQHVIPQTDSH 190
           L GS + P  P ++ L+P+ AGKQ ++K  H+ S  E  V+++   + +L  V+P  D H
Sbjct: 39  LHGSGIGPERPDVDHLVPAGAGKQPVDKDAHVDSGDELGVVVVPGEQRVLGAVVPHADGH 98

Query: 191 IVGAG 196
           +VGAG
Sbjct: 99  VVGAG 103

[Close]

BLAST of Lsi01G002380 vs. NCBI nr
Match: KCW74110.1 (hypothetical protein EUGRSUZ_E02750 [Eucalyptus grandis])

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-06
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 139 MLPYINKLIPSSAGKQALNKHTHIYSYGEFSVMIISPNKSILQHVIPQTDSHIVGA 195
           MLP INKLIP+   ++  +KH H+ +  EF V+I+ P++ IL HVIPQ   H+VGA
Sbjct: 1   MLPDINKLIPTCTSQKPFDKHAHVDADREFRVVIVPPHERILHHVIPQAHRHVVGA 56

[Close]

BLAST of Lsi01G002380 vs. NCBI nr
Match: RCV04687.1 (hypothetical protein SETIT_1G020900v2 [Setaria italica])

HSP 1 Score: 61.6 bits (148), Expect = 8.6e-06
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 131 LGGSRVRPMLPYINKLIPSSAGKQALNKHTHIYSYGEFSVMIISPNKSILQHVIPQTDSH 190
           L GS + P  P ++ L+P+ AGKQ ++KH H+ S  E  V+++   + +L  V+P  D H
Sbjct: 39  LHGSGIGPERPDVDHLVPAGAGKQPVDKHAHVDSGDELGVVVVPGEQRVLGAVVPHADGH 98

Query: 191 IVGAG 196
           +VGAG
Sbjct: 99  VVGAG 103

[Close]

BLAST of Lsi01G002380 vs. NCBI nr
Match: TKW37032.1 (hypothetical protein SEVIR_1G021000v2 [Setaria viridis])

HSP 1 Score: 58.2 bits (139), Expect = 9.5e-05
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 131 LGGSRVRPMLPYINKLIPSSAGKQALNKHTHIYSYGEFSVMIISPNKSILQHVIPQTDSH 190
           L GS + P  P ++ L+P+ AGKQ ++K  H+ S  E  V+++   + +L  V+P  D H
Sbjct: 39  LHGSGIGPERPDVDHLVPAGAGKQPVDKDAHVDSGDELGVVVVPGEQRVLGAVVPHADGH 98

Query: 191 IVGAG 196
           +VGAG
Sbjct: 99  VVGAG 103

The following BLAST results are available for this feature:

BLAST of Lsi01G002380 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G002380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A059C845	8.4e-07	50.00	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E02750 PE=4 SV...	[more]
A0A368PFX7	4.2e-06	40.00	Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_1G020900v2 PE=4 SV=1	[more]
A0A4U6W4N3	4.6e-05	38.46	Uncharacterized protein OS=Setaria viridis OX=4556 GN=SEVIR_1G021000v2 PE=4 SV=1	[more]

BLAST of Lsi01G002380 vs. NCBI nr


Match Name	E-value	Identity	Description
KCW74110.1	1.7e-06	50.00	hypothetical protein EUGRSUZ_E02750 [Eucalyptus grandis]	[more]
RCV04687.1	8.6e-06	40.00	hypothetical protein SETIT_1G020900v2 [Setaria italica]	[more]
TKW37032.1	9.5e-05	38.46	hypothetical protein SEVIR_1G021000v2 [Setaria viridis]	[more]

BLAST of Lsi01G002380 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G002380.1	Lsi01G002380.1	mRNA