Lsi01G002250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G002250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	precursor of CEP14
Location	chr01: 2054042 .. 2054299 (-)
RNA-Seq Expression	Lsi01G002250
Synteny	Lsi01G002250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGTTTCACCCTCCTCACTTGCTCTCTCATTTTTGCTCTTCTATTCGCATCCTCTCTTCCCACTTCACGCGCCGCCAGACTCCTCCCACTCCCAACCATGCCTTCTCCCAATACCCTCTTTCTCGCCGCCCTTCCCAAGGGCACCGTCCCCACTTCCACCCCCAGTAAGAAAGTTCATGCCCTGCTTCTCCACCACAACCTCACCTCCCGCCATCTTATTCAGTCCGTTCCAAGCCCCGGCGTCGGCCATTAA

mRNA sequence

ATGCCTCGTTTCACCCTCCTCACTTGCTCTCTCATTTTTGCTCTTCTATTCGCATCCTCTCTTCCCACTTCACGCGCCGCCAGACTCCTCCCACTCCCAACCATGCCTTCTCCCAATACCCTCTTTCTCGCCGCCCTTCCCAAGGGCACCGTCCCCACTTCCACCCCCAGTAAGAAAGTTCATGCCCTGCTTCTCCACCACAACCTCACCTCCCGCCATCTTATTCAGTCCGTTCCAAGCCCCGGCGTCGGCCATTAA

Coding sequence (CDS)

ATGCCTCGTTTCACCCTCCTCACTTGCTCTCTCATTTTTGCTCTTCTATTCGCATCCTCTCTTCCCACTTCACGCGCCGCCAGACTCCTCCCACTCCCAACCATGCCTTCTCCCAATACCCTCTTTCTCGCCGCCCTTCCCAAGGGCACCGTCCCCACTTCCACCCCCAGTAAGAAAGTTCATGCCCTGCTTCTCCACCACAACCTCACCTCCCGCCATCTTATTCAGTCCGTTCCAAGCCCCGGCGTCGGCCATTAA

Protein sequence

MPRFTLLTCSLIFALLFASSLPTSRAARLLPLPTMPSPNTLFLAALPKGTVPTSTPSKKVHALLLHHNLTSRHLIQSVPSPGVGH

Homology

[Close]

BLAST of Lsi01G002250 vs. ExPASy Swiss-Prot
Match: Q52K95 (Precursor of CEP14 OS=Arabidopsis thaliana OX=3702 GN=CEP14 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-07
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 40  TLFLAALPKGTVPTSTPSKKVHALLLHHNLTSRHL------IQSVPSPGVGH 86
           T  L+ALPKG +P STPSKK HA +    L SRHL      ++SVPSPGVGH
Sbjct: 56  TSTLSALPKGKIPNSTPSKKGHAAVFAGKLRSRHLSTVDRYLRSVPSPGVGH 107

[Close]

BLAST of Lsi01G002250 vs. ExPASy TrEMBL
Match: A0A0A0KKF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519990 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.8e-29
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MPRFTLLTCSLIFALLFASSLPTSRAARLLPLPTMPSPNTLFLAALPKGTVPTSTPSKKV 60
          MPRFT +T SLI ALLFA S PTS AARLLP  TMPSPNTLFL ALPKGT+PTS+PSKKV
Sbjct: 1  MPRFTFITFSLILALLFAFSAPTSLAARLLPTNTMPSPNTLFLTALPKGTIPTSSPSKKV 60

Query: 61 HALLLHHNLTSRHLIQSVPSPGVGH 86
          H++LLHHNLT+RHL+QSVPSPGVGH
Sbjct: 61 HSMLLHHNLTARHLVQSVPSPGVGH 85

[Close]

BLAST of Lsi01G002250 vs. ExPASy TrEMBL
Match: A0A314ZK87 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_19850 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 1  MPRFTLLTCSLIFALLFASSLPTSRAARLLPLPTMPSPN-------TLFLAALPKGTVPT 60
          MPR + LT  LIF ++ AS    S + +LL +              +LFL ALPKGTVP 
Sbjct: 1  MPRLSALT--LIFLVVLASFAAASESRKLLDMKKQDGDGQYRKRMASLFLGALPKGTVPA 60

Query: 61 STPSKKVHALLLHHNLTSRH-------LIQSVPSPGVGH 86
          STPSKK HA++++  L +RH       L Q+VPSPGVGH
Sbjct: 61 STPSKKGHAVVINEKLVARHLSSNDRILAQAVPSPGVGH 97

[Close]

BLAST of Lsi01G002250 vs. ExPASy TrEMBL
Match: A0A540L732 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_032132 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1  MPRFTLLTCSLIFALLFASSLPTSRAARLLPL----PTMPSPNTLFLAALPKGTVPTSTP 60
          MPR T L  +LIF +  ASS+ T  + +LL +           +LFL+ALPKG VP STP
Sbjct: 1  MPRLTAL--ALIFLVAMASSVSTLESRKLLDVKDDSENQKKVASLFLSALPKGKVPASTP 60

Query: 61 SKKVHALLLHHNLTSRH--------LIQSVPSPGVGH 86
          SKK HA++++  L +RH        L QSVPSPGVGH
Sbjct: 61 SKKGHAVVVNEKLIARHLSVVQNRILAQSVPSPGVGH 95

[Close]

BLAST of Lsi01G002250 vs. ExPASy TrEMBL
Match: A0A5E4FPG9 (PREDICTED: of CEP14 OS=Prunus dulcis OX=3755 GN=ALMOND_2B021359 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 1  MPRFTLLTCSLIFALLFASSLPTSRAARLLPLPTMPSPN-------TLFLAALPKGTVPT 60
          MPR + L  +LIF ++ AS    S + +LL +              +LFL ALPKGTVP 
Sbjct: 1  MPRLSAL--ALIFLVVLASFAAASESRKLLDMKKQDGDGQYRKRVASLFLGALPKGTVPA 60

Query: 61 STPSKKVHALLLHHNLTSRH-------LIQSVPSPGVGH 86
          STPSKK HA++++  L +RH       L Q+VPSPGVGH
Sbjct: 61 STPSKKGHAVVINEKLIARHLSSNDRILAQAVPSPGVGH 97

[Close]

BLAST of Lsi01G002250 vs. ExPASy TrEMBL
Match: M5WYF5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G067000 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 1  MPRFTLLTCSLIFALLFASSLPTSRAARLLPLPTMPSPN-------TLFLAALPKGTVPT 60
          MPR + L  +LIF ++ AS    S + +LL +              +LFL ALPKGTVP 
Sbjct: 1  MPRLSAL--ALIFLVVLASFAAASESRKLLDMKKQDCDGQYRKRVASLFLGALPKGTVPA 60

Query: 61 STPSKKVHALLLHHNLTSRH-------LIQSVPSPGVGH 86
          STPSKK HA++++  L +RH       L Q+VPSPGVGH
Sbjct: 61 STPSKKGHAVVINEKLIARHLSSNDRILAQAVPSPGVGH 97

[Close]

BLAST of Lsi01G002250 vs. NCBI nr
Match: KAG7026512.1 (Precursor of CEP14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 3  RFTLLTCSLIFALLFASSLPTSRAARLLPLPTMPSPNTLFLAALPKGTVPTSTPSKKVHA 62
          RFTL+TC L+  LLFASS  TS AARL  LPT PSP++LFLAALPKGTVP+S PSKK HA
Sbjct: 4  RFTLITCPLLLLLLFASSALTSHAARL--LPTTPSPHSLFLAALPKGTVPSSAPSKKAHA 63

Query: 63 LLLHHNLTSRHLIQSVPSPGVGH 86
          LLL   LT+RHL++SVPSPG+GH
Sbjct: 64 LLLDQKLTARHLVESVPSPGIGH 84

[Close]

BLAST of Lsi01G002250 vs. NCBI nr
Match: KAG7034658.1 (Precursor of CEP14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 6.1e-17
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MPRFTLLTCSLIFALLFASSLPTSRAARLLPLPTMPSPNTLFLAALPKGTVPTSTPSKKV 60
          M  F L+T  LI  LLFASS PTS AARLL        ++LFLAALPKGTVP+STPSKK 
Sbjct: 1  MACFKLITWPLILTLLFASSAPTSHAARLL------RTDSLFLAALPKGTVPSSTPSKKG 60

Query: 61 HALLLHHNLTSRHLIQSVPSPGVGH 86
          HA++L   LT+RHL+QSVPSPG+GH
Sbjct: 61 HAMVLDQKLTARHLVQSVPSPGIGH 79

[Close]

BLAST of Lsi01G002250 vs. NCBI nr
Match: XP_028764797.1 (precursor of CEP14 [Prosopis alba])

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-09
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1   MPRFTLLTCSLIFALLFASSLPTSRAARL-------LPLPTMPSPNTLFLAALPKGTVPT 60
           M RF   T  LIF++L AS    S A +L        P+ T PS ++LFL+ALPKGTVP+
Sbjct: 31  MARF--FTFLLIFSVLSASFCSFSEARKLRVGGQRSRPIVTPPSRDSLFLSALPKGTVPS 90

Query: 61  STPSKKVHALLLHHNLTSRHLI------QSVPSPGVGH 86
           STPSKK HA ++   L +RHLI      +SVPSPG GH
Sbjct: 91  STPSKKGHAAVVDEKLVARHLIVMDRLLRSVPSPGAGH 126

[Close]

BLAST of Lsi01G002250 vs. NCBI nr
Match: XP_009351603.1 (PREDICTED: uncharacterized protein LOC103943119 [Pyrus x bretschneideri])

HSP 1 Score: 67.0 bits (162), Expect = 8.9e-08
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1  MPRFTLLTCSLIFALLFASSLPTSRAARLLPL----PTMPSPNTLFLAALPKGTVPTSTP 60
          MPR T L  +LIF +  ASS+ T  + +LL +           +LFL+ALPKG VP STP
Sbjct: 1  MPRLTAL--ALIFLVTMASSVSTLESRKLLDVKDDAENQKKVASLFLSALPKGKVPASTP 60

Query: 61 SKKVHALLLHHNLTSRH--------LIQSVPSPGVGH 86
          SKK HA++++  L +RH        L QSVPSPGVGH
Sbjct: 61 SKKGHAVVVNEKLIARHLSFVKDRILAQSVPSPGVGH 95

[Close]

BLAST of Lsi01G002250 vs. NCBI nr
Match: TQD82288.1 (hypothetical protein C1H46_032132 [Malus baccata])

HSP 1 Score: 67.0 bits (162), Expect = 8.9e-08
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1  MPRFTLLTCSLIFALLFASSLPTSRAARLLPL----PTMPSPNTLFLAALPKGTVPTSTP 60
          MPR T L  +LIF +  ASS+ T  + +LL +           +LFL+ALPKG VP STP
Sbjct: 1  MPRLTAL--ALIFLVAMASSVSTLESRKLLDVKDDSENQKKVASLFLSALPKGKVPASTP 60

Query: 61 SKKVHALLLHHNLTSRH--------LIQSVPSPGVGH 86
          SKK HA++++  L +RH        L QSVPSPGVGH
Sbjct: 61 SKKGHAVVVNEKLIARHLSVVQNRILAQSVPSPGVGH 95

[Close]

BLAST of Lsi01G002250 vs. TAIR 10
Match: AT1G29290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-08
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 40  TLFLAALPKGTVPTSTPSKKVHALLLHHNLTSRHL------IQSVPSPGVGH 86
           T  L+ALPKG +P STPSKK HA +    L SRHL      ++SVPSPGVGH
Sbjct: 56  TSTLSALPKGKIPNSTPSKKGHAAVFAGKLRSRHLSTVDRYLRSVPSPGVGH 107

The following BLAST results are available for this feature:

BLAST of Lsi01G002250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q52K95	3.5e-07	57.69	Precursor of CEP14 OS=Arabidopsis thaliana OX=3702 GN=CEP14 PE=2 SV=1	[more]

BLAST of Lsi01G002250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKF2	5.8e-29	81.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519990 PE=4 SV=1	[more]
A0A314ZK87	4.3e-08	45.45	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_198...	[more]
A0A540L732	4.3e-08	47.42	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_032132 PE=4 SV=1	[more]
A0A5E4FPG9	1.6e-07	44.44	PREDICTED: of CEP14 OS=Prunus dulcis OX=3755 GN=ALMOND_2B021359 PE=4 SV=1	[more]
M5WYF5	2.1e-07	44.44	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G067000 PE=4 SV=1	[more]

BLAST of Lsi01G002250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026512.1	1.1e-21	72.29	Precursor of CEP14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7034658.1	6.1e-17	64.71	Precursor of CEP14, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_028764797.1	6.2e-09	50.00	precursor of CEP14 [Prosopis alba]	[more]
XP_009351603.1	8.9e-08	47.42	PREDICTED: uncharacterized protein LOC103943119 [Pyrus x bretschneideri]	[more]
TQD82288.1	8.9e-08	47.42	hypothetical protein C1H46_032132 [Malus baccata]	[more]

BLAST of Lsi01G002250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29290.1	2.5e-08	57.69	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038930	Precursor of CEP13/CEP14	PANTHER	PTHR37180	PRECURSOR OF CEP14	coord: 8..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G002250.1	Lsi01G002250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:0006970	response to osmotic stress