Lsi01G002070 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G002070
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cyclic phosphodiesterase-like
Location	chr01: 1941996 .. 1944097 (-)
RNA-Seq Expression	Lsi01G002070
Synteny	Lsi01G002070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTTTCACAATTTCACTGTAACAACTGTAACTGCATCCCTCCACGCAATACAATTGTCATCAAAACCAATTCCTCCCATTCCTACCGTCAACGGAATCGGAACTATAATACTCCATTTTATTTCAATCTTCTTCTCTTCTCCACTCCAATGGCCAACCCAGAATCCGCCTCTGAAGGGGAAAAGAACGTGTATTCGGTGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTAATGAACAGCCTCATATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTTCGCTCCGCTTGCCAGGGGCTTAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGCTTCCCTCTTCTGATCCTTCTGCGCTTCCTTTGATCTTTTAGGGTTCTTTGTTTTTCCTCCTTTTCTTTTGTCTGTTTGATTCTTCTCTCACTCCCACTCTTTTTCTTTTCAGGTGGTGGAGACTAGTTCACATTGCTGTGGACATTTTGGTTACAAAAACTCTACCCGTAAGTTCTTCTTCTCTTGCCTAATTTTTTTTTTCCCAAAAAAAATGTTATGTTCACATTCATTGTAGTATTATCTTCTTAAGGATATAAATTTTGACTAGAAATAGCAGTATAGTTTGTTTATTGCTATATTCAATCATGAATCCACATTCAGAATGATGAATTGGTTCTGCTTTCTCCCTTTAAAATCAGAGTTTCTCTGGATCAGCTTATGCAATAATATTAAGATTACAGGATGAACATCTGGATTTTACATATTTGGTGTTAGAAAACTCTTTAAGATTTGGTAAATTAATGGGTCAAAACTAGGCCTTGAGAAAGGAGATTAGGTAAATTTTTTGGTATTATCCATCTTAATGGTGATAGTGATACTGATGGCACTCATCTGCAAAATGATATACATGAGCAGGCTAAGAAATTGAGCTAAATTTCTTCTTTACAATTAAATGATAATATAACGGGATTAGTTATATGAAGGTAAATGCAAGCGTGTTGTCTATTCAGTTGCTCAAGTATAGCATCTTTTGCCCTTCTTTGTTCTGTTTAACTTCTTTACTTAGAAATTTAACTGACAAACCCTTGTATGAAATTGGCTGCTGTTTGCAACTTTCTTCAAATTGGGAAGGTTTGAATTTAAGAATAGTTCAAGTTCTCTGAGATGTTCTGCTGGAGTAAAATAGAACAGAGAAGTATGCTTGTATAGGTACAAGATAATGGGGATGCTTGTCGAATCTCAACTAATAACATGAATGCCATTTCTGTATCAGCTTACATGCCCCATATGAGCCTACTGTATTCCAACATATCAGATGAAAAAAAGAAACAGGCAAAACAAATAGCAGACAAGCTCGATGAAGCCGTGAACGGCCTGAGGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACTGAGGATCAAACTCTAGAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTGAAGTTAAGCTTCTGTTATACCCATGCCCCTTGAAGATCTAGATTATGTTCTGTTACACTGTTTAACGTATTTTTTTCCAACAATGTCTGTACTGCTCTAGACTTCTTAACTGGGAAAAAATAAATGTCAGCCGAAGGCCTTGTTTGGAAGCTTACCAAGTTTCGTGATTAGATTGTTTGAACCTCTTTTGTTTTTTGGAAAACAAGTTTGTGTTTATTTCATGTATGGCATGGAATTTAGGGAGGAAAAACCAAGCTTCATTACCCAAGGAAGATTACAGACATTACTGCAAGCTCTTCCAATTAGTGAAAAGATTGCAAATGCTGAGATTACGCTTTACAGCATCAGAAGCCTACAAAATCAGTCATGGAAGTAAATCTTTACTTCTTTCAGTATAATTGTAGTATGGAATTTTATCAAATTTGTATTCCCTTCCACCAATTACCACTCTAATTTCTCTATTTCCTATTTTATTCTTGTAGAGAAGGGAGTTGTCTTTTTTTTTTTT

mRNA sequence

CTTCCTTTCACAATTTCACTGTAACAACTGTAACTGCATCCCTCCACGCAATACAATTGTCATCAAAACCAATTCCTCCCATTCCTACCGTCAACGGAATCGGAACTATAATACTCCATTTTATTTCAATCTTCTTCTCTTCTCCACTCCAATGGCCAACCCAGAATCCGCCTCTGAAGGGGAAAAGAACGTGTATTCGGTGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTAATGAACAGCCTCATATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTTCGCTCCGCTTGCCAGGGGCTTAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGCTGTGGACATTTTGGTTACAAAAACTCTACCCCTTACATGCCCCATATGAGCCTACTGTATTCCAACATATCAGATGAAAAAAAGAAACAGGCAAAACAAATAGCAGACAAGCTCGATGAAGCCGTGAACGGCCTGAGGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACTGAGGATCAAACTCTAGAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTGAAGTTAAGCTTCTGTTATACCCATGCCCCTTGAAGATCTAGATTATGTTCTGTTACACTGTTTAACGTATTTTTTTCCAACAATGTCTGTACTGCTCTAGACTTCTTAACTGGGAAAAAATAAATGTCAGCCGAAGGCCTTGTTTGGAAGCTTACCAAGTTTCGTGATTAGATTGTTTGAACCTCTTTTGTTTTTTGGAAAACAAGTTTGTGTTTATTTCATGTATGGCATGGAATTTAGGGAGGAAAAACCAAGCTTCATTACCCAAGGAAGATTACAGACATTACTGCAAGCTCTTCCAATTAGTGAAAAGATTGCAAATGCTGAGATTACGCTTTACAGCATCAGAAGCCTACAAAATCAGTCATGGAAGTAAATCTTTACTTCTTTCAGTATAATTGTAGTATGGAATTTTATCAAATTTGTATTCCCTTCCACCAATTACCACTCTAATTTCTCTATTTCCTATTTTATTCTTGTAGAGAAGGGAGTTGTCTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCCAACCCAGAATCCGCCTCTGAAGGGGAAAAGAACGTGTATTCGGTGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTAATGAACAGCCTCATATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTTCGCTCCGCTTGCCAGGGGCTTAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGCTGTGGACATTTTGGTTACAAAAACTCTACCCCTTACATGCCCCATATGAGCCTACTGTATTCCAACATATCAGATGAAAAAAAGAAACAGGCAAAACAAATAGCAGACAAGCTCGATGAAGCCGTGAACGGCCTGAGGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACTGAGGATCAAACTCTAGAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTGA

Protein sequence

MANPESASEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGYKNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDLP

Homology

[Close]

BLAST of Lsi01G002070 vs. ExPASy Swiss-Prot
Match: O04147 (Cyclic phosphodiesterase OS=Arabidopsis thaliana OX=3702 GN=At4g18930 PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.8e-54
Identity = 100/173 (57.80%), Postives = 127/173 (73.41%), Query Frame = 0


Query: 9   EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRS 68
           E +K+VYSVWALP E+   R K LM +L SEF GP+F PH+TV  +  LT D+A   F S
Sbjct: 3   EVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFES 62

Query: 69  ACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGYKNSTPYMPHMSL 128
           AC GLKAY ATVD VSTGTFF+QCVFLL+  T EV+E   HC  HF    +TPYMPH+SL
Sbjct: 63  ACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSL 122

Query: 129 LYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIA 182
           LY+ +++E+KK A++ A  LD +++GL F + RLAL KTDTED+TLE+WE +A
Sbjct: 123 LYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVA 175

[Close]

BLAST of Lsi01G002070 vs. ExPASy TrEMBL
Match: A0A6J1INY2 (cyclic phosphodiesterase-like OS=Cucurbita maxima OX=3661 GN=LOC111478628 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.1e-91
Identity = 165/190 (86.84%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MANPES----ASEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESPTIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLLIHPTT+VVETSSHCCGHFGY
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGY 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
           KNSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FP+TRLALYKTDT D+TL+S
Sbjct: 121 KNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPVTRLALYKTDTGDETLKS 180

Query: 181 WEKIAEHDLP 187
           WEKIAE DLP
Sbjct: 181 WEKIAEQDLP 190

[Close]

BLAST of Lsi01G002070 vs. ExPASy TrEMBL
Match: A0A6J1EGC1 (cyclic phosphodiesterase-like OS=Cucurbita moschata OX=3662 GN=LOC111433116 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.4e-89
Identity = 164/190 (86.32%), Postives = 176/190 (92.63%), Query Frame = 0


Query: 1   MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           MANPES     SEGEKNVYSVWALPPEDV ARI+ LMNSL SEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVMARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLLIHPTT+VVETSSHCCGHFGY
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGY 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
           KN TPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TL+S
Sbjct: 121 KN-TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEHDLP 187
           WEKIAE DLP
Sbjct: 181 WEKIAEQDLP 189

[Close]

BLAST of Lsi01G002070 vs. ExPASy TrEMBL
Match: A0A1S3AYZ1 (cyclic phosphodiesterase-like OS=Cucumis melo OX=3656 GN=LOC103484419 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.4e-88
Identity = 162/189 (85.71%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           M NPESA    SE E NVYSVWALPPEDV+ARI+NLMNSL SEFGGPQFEPHITVVGAIR
Sbjct: 1   MVNPESASIQSSEEETNVYSVWALPPEDVSARIENLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LT +DALNKF +ACQG+KAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSH C HFG+
Sbjct: 61  LTAEDALNKFLTACQGIKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHFCKHFGF 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
           KNSTPYMPHMSLLY++ISDEKKKQAK+IADKLDEAVNGL+FPITRLAL+KTDT D+TL+S
Sbjct: 121 KNSTPYMPHMSLLYAHISDEKKKQAKEIADKLDEAVNGLKFPITRLALWKTDTSDETLKS 180

Query: 181 WEKIAEHDL 186
           WEKI EHDL
Sbjct: 181 WEKIVEHDL 189

[Close]

BLAST of Lsi01G002070 vs. ExPASy TrEMBL
Match: A0A0A0KLS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520400 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.2e-84
Identity = 156/189 (82.54%), Postives = 171/189 (90.48%), Query Frame = 0


Query: 1   MANPESAS----EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           M NPESAS    E E +VYSVWALPPEDV+ARI+NLM SL SEFGGP FEPHITVVGAIR
Sbjct: 1   MMNPESASIQSDEEETHVYSVWALPPEDVSARIENLMKSLRSEFGGPLFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LT +DAL KFR+ACQG+KAYQATVDHV+TGTFFYQCVFLLIHPTTEVVETSSH C HF +
Sbjct: 61  LTAEDALTKFRTACQGIKAYQATVDHVTTGTFFYQCVFLLIHPTTEVVETSSHFCKHFDF 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
           K+STPYMPHMSLLYS+ISDEK+KQAK+IADKLDEAVNGLRFPITRLAL KTDT D+TL+S
Sbjct: 121 KSSTPYMPHMSLLYSHISDEKRKQAKEIADKLDEAVNGLRFPITRLALCKTDTADETLKS 180

Query: 181 WEKIAEHDL 186
           W+KI EHDL
Sbjct: 181 WDKIVEHDL 189

[Close]

BLAST of Lsi01G002070 vs. ExPASy TrEMBL
Match: A0A6J1EEQ8 (cyclic phosphodiesterase-like OS=Cucurbita moschata OX=3662 GN=LOC111433501 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.6e-82
Identity = 152/190 (80.00%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           MANP SA     EGE  +YSVWALPPEDV  +I +LM+SL SEFGGP+FEPHITVVGAIR
Sbjct: 1   MANPNSAPIEPCEGE--LYSVWALPPEDVATKIISLMSSLRSEFGGPEFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LTP DALNKFRSAC+G+KAYQATVD VS GT FYQCVFLLIHPTTEVV+ SSHCCGHFGY
Sbjct: 61  LTPQDALNKFRSACEGVKAYQATVDQVSIGTTFYQCVFLLIHPTTEVVQISSHCCGHFGY 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
            NSTPYMPH+SLLY+NISDE KK+AK+IADKL+EAVNGL+ P+TRLALYKTDT D+TL+S
Sbjct: 121 NNSTPYMPHLSLLYANISDEMKKRAKEIADKLNEAVNGLKVPVTRLALYKTDTGDETLKS 180

Query: 181 WEKIAEHDLP 187
           WEKIAEHDLP
Sbjct: 181 WEKIAEHDLP 188

[Close]

BLAST of Lsi01G002070 vs. NCBI nr
Match: XP_038882567.1 (cyclic phosphodiesterase-like [Benincasa hispida])

HSP 1 Score: 362.5 bits (929), Expect = 2.2e-96
Identity = 176/190 (92.63%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 1   MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           MANPESA    SE E NVYSVWALPPEDVTARIKNLMNSL SEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESASIQPSEAENNVYSVWALPPEDVTARIKNLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIH TTEVVETSSHCCGHFGY
Sbjct: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHSTTEVVETSSHCCGHFGY 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
           KNSTPYMPHMSLLY+NISDEKKKQAK IADKLDEAVNGL+FPITRLALYKTDTED+TL+S
Sbjct: 121 KNSTPYMPHMSLLYANISDEKKKQAKVIADKLDEAVNGLKFPITRLALYKTDTEDETLKS 180

Query: 181 WEKIAEHDLP 187
           WEKIAEH+LP
Sbjct: 181 WEKIAEHELP 190

[Close]

BLAST of Lsi01G002070 vs. NCBI nr
Match: XP_023543945.1 (cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.1 bits (884), Expect = 3.7e-91
Identity = 166/190 (87.37%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLLIHPTT+VVETSSHCCGHFGY
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGY 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
           KNSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TL+S
Sbjct: 121 KNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEHDLP 187
           WEKIAE DLP
Sbjct: 181 WEKIAEQDLP 190

[Close]

BLAST of Lsi01G002070 vs. NCBI nr
Match: XP_022978766.1 (cyclic phosphodiesterase-like [Cucurbita maxima])

HSP 1 Score: 344.4 bits (882), Expect = 6.3e-91
Identity = 165/190 (86.84%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MANPES----ASEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESPTIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLLIHPTT+VVETSSHCCGHFGY
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSSHCCGHFGY 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
           KNSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FP+TRLALYKTDT D+TL+S
Sbjct: 121 KNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPVTRLALYKTDTGDETLKS 180

Query: 181 WEKIAEHDLP 187
           WEKIAE DLP
Sbjct: 181 WEKIAEQDLP 190

[Close]

BLAST of Lsi01G002070 vs. NCBI nr
Match: XP_023522563.1 (cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo] >XP_023543944.1 cyclic phosphodiesterase-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 344.0 bits (881), Expect = 8.2e-91
Identity = 166/190 (87.37%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 1   MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLLIHPT EVVETSSHCCGHFGY
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTIEVVETSSHCCGHFGY 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
           KNSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TL+S
Sbjct: 121 KNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEHDLP 187
           WEKIAE DLP
Sbjct: 181 WEKIAEQDLP 190

[Close]

BLAST of Lsi01G002070 vs. NCBI nr
Match: KAG6581386.1 (Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 165/190 (86.84%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 1   MANPESA----SEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIR 60
           MANPES     SEGEKNVYSVWALPPEDVTARI+ LMNSL SEFGGPQFEPHITVVGAIR
Sbjct: 1   MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIR 60

Query: 61  LTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGY 120
           LT DDALNKFRSAC+GLKAYQATVD VSTGTFFYQCVFLLIHPTT+VVETSSHCCGHFGY
Sbjct: 61  LTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTKVVETSSHCCGHFGY 120

Query: 121 KNSTPYMPHMSLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLES 180
            NSTPYMPH+SLLY+NISDE+KKQAK++A+KLDEA+NGL FPITRLALYKTDT D+TL+S
Sbjct: 121 NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKS 180

Query: 181 WEKIAEHDLP 187
           WEKIAE DLP
Sbjct: 181 WEKIAEQDLP 190

[Close]

BLAST of Lsi01G002070 vs. TAIR 10
Match: AT4G18930.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-55
Identity = 100/173 (57.80%), Postives = 127/173 (73.41%), Query Frame = 0


Query: 9   EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRS 68
           E +K+VYSVWALP E+   R K LM +L SEF GP+F PH+TV  +  LT D+A   F S
Sbjct: 3   EVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFES 62

Query: 69  ACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGYKNSTPYMPHMSL 128
           AC GLKAY ATVD VSTGTFF+QCVFLL+  T EV+E   HC  HF    +TPYMPH+SL
Sbjct: 63  ACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSL 122

Query: 129 LYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIA 182
           LY+ +++E+KK A++ A  LD +++GL F + RLAL KTDTED+TLE+WE +A
Sbjct: 123 LYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVA 175

[Close]

BLAST of Lsi01G002070 vs. TAIR 10
Match: AT4G18940.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 79/179 (44.13%), Postives = 118/179 (65.92%), Query Frame = 0


Query: 9   EGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAI--RLTPDDALNKF 68
           E EK +Y++WA+P +DV  R++ LM  L SEFGGP F+PH+T+VG    +LT  +A   F
Sbjct: 19  EEEKAMYAIWAVPEDDVEDRLQRLMEGLRSEFGGPAFDPHLTLVGPFPYKLTASEAKRMF 78

Query: 69  RSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCGHFGYKNSTPYMPHM 128
           +SAC+G K Y ATVD VS GT ++QC+++ +  T EV+  + H   HF       Y+PHM
Sbjct: 79  KSACEGFKVYPATVDQVSAGTSYFQCLYVSLRHTVEVMNAAGHFMAHFKPFTGKFYVPHM 138

Query: 129 SLLYSNISDEKKKQAKQIADKLDEAVNGLRFPITRLALYKTDTEDQTLESWEKIAEHDL 186
           S+LY ++++ +KK+A + A  LD +++GL F I R+AL+ TD +   + SW K+ EH L
Sbjct: 139 SILYGDLTEREKKKALEKAYTLDSSLDGLNFKINRVALWITDAD---VGSWVKVDEHTL 194

The following BLAST results are available for this feature:

BLAST of Lsi01G002070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04147	3.8e-54	57.80	Cyclic phosphodiesterase OS=Arabidopsis thaliana OX=3702 GN=At4g18930 PE=1 SV=1	[more]

BLAST of Lsi01G002070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1INY2	3.1e-91	86.84	cyclic phosphodiesterase-like OS=Cucurbita maxima OX=3661 GN=LOC111478628 PE=4 S...	[more]
A0A6J1EGC1	6.4e-89	86.32	cyclic phosphodiesterase-like OS=Cucurbita moschata OX=3662 GN=LOC111433116 PE=4...	[more]
A0A1S3AYZ1	2.4e-88	85.71	cyclic phosphodiesterase-like OS=Cucumis melo OX=3656 GN=LOC103484419 PE=4 SV=1	[more]
A0A0A0KLS9	6.2e-84	82.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520400 PE=4 SV=1	[more]
A0A6J1EEQ8	2.6e-82	80.00	cyclic phosphodiesterase-like OS=Cucurbita moschata OX=3662 GN=LOC111433501 PE=4...	[more]

BLAST of Lsi01G002070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882567.1	2.2e-96	92.63	cyclic phosphodiesterase-like [Benincasa hispida]	[more]
XP_023543945.1	3.7e-91	87.37	cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022978766.1	6.3e-91	86.84	cyclic phosphodiesterase-like [Cucurbita maxima]	[more]
XP_023522563.1	8.2e-91	87.37	cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo] >XP_023543944.1 cycli...	[more]
KAG6581386.1	1.8e-90	86.84	Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi01G002070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18930.1	2.7e-55	57.80	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]
AT4G18940.1	1.7e-41	44.13	RNA ligase/cyclic nucleotide phosphodiesterase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012386	2',3'-cyclic-nucleotide 3'-phosphodiesterase	PIRSF	PIRSF017903	CPDase_plant	coord: 2..186 e-value: 1.5E-69 score: 231.5
IPR012386	2',3'-cyclic-nucleotide 3'-phosphodiesterase	PFAM	PF07823	CPDase	coord: 16..153 e-value: 1.3E-12 score: 47.9
IPR012386	2',3'-cyclic-nucleotide 3'-phosphodiesterase	PANTHER	PTHR28141	2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE	coord: 11..185
None	No IPR available	GENE3D	3.90.1140.10	Cyclic phosphodiesterase	coord: 8..186 e-value: 2.6E-56 score: 192.1
None	No IPR available	PANTHER	PTHR28141:SF4	CYCLIC PHOSPHODIESTERASE-LIKE	coord: 11..185
IPR009097	Cyclic phosphodiesterase	SUPERFAMILY	55144	LigT-like	coord: 12..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G002070.1	Lsi01G002070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009187	cyclic nucleotide metabolic process
molecular_function	GO:0004113	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
molecular_function	GO:0004112	cyclic-nucleotide phosphodiesterase activity