Lsi01G001890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	AWPM-19-like protein
Location	chr01: 1808436 .. 1809939 (+)
RNA-Seq Expression	Lsi01G001890
Synteny	Lsi01G001890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTCTTCCCCTTTCCAACCAATTCTGACCCCTTTTGGCAAGCAAAGAACCTGACATTCTCCATTAAAATGCTTTCAACAAAATCCCAACTCTCCACAGGATGAACATTCAACTCTAACTCATTCATCTTCATCTCAAAAACCTTCCTTCTTCCATATAAGCCAGTACAAAACATGAAGACGATTGCAGCGGCGATTTTGTTTTTTAATTTCTGCATATGCATCGTCATTTTCGGAATCGGTGGCTGGGTGATGAATCACACAATTGATAATGGATTTGTTATAGGTATGAATTATATCCCTGCTTCCTCATCTTTCTGCTGATCTTCTTTCAACTTTAGTGGTAATGTTGTGCAATATTTTCATTTTCAGGTGCAGGATTTGAAGTTCCTGACTATTTTTCTCCAATTTTCTTCCAAATTGGGAACTCTGCCACTGGGTTCTTTGTTGTTTTTGCTTTGATTGCTGCTGTTGCTGTTGTTGCATCTGCCATCTCTGGAAGCTTTTATTTTCGTTTTCCAGACTCTGGCAACCTGCCCCCCGCCACTTCTACAGCACTCATCTCTTGCTTCCTAACTTTTCTCGCTATGGGGTACGCCAGTTTAAATCTTATTTTGACTCTAGAACTTTCGTATTAAATATTTTATTTCGAAGACTCTGTTTTCAAAAGTTGTGTTCTCCAGTCAATAAACATCACATAACAAGCTATTTAGTCGCACGCCTCAATCATTCACGAATCATTTAACAAATCTAAACTCATGCAAATCCCACGTTTTGAAATTACATGCTACAATATAGCCATTAGAATCTCACTGATCATTACCCACATAAGCATTCCTTGTTAGGACAGGACAGTTGAAATATAGTTGTGTCAAAGGAAACACGGTCCAAACATCTGGGGAATGAAAACCTATTTAGAAGTTTGAATCTTCTCTAAATGGATTTATAACTAGAATGAATGTCACCGATGCAGGTTTGCTTGGAAAGAGATTGCTCTGACTGTCACCAGTGGCCATCTGGTGAGGAACCTAAAGCTTCTGTTGTTTTTCTCTCTTTTCTTTTCCCTTTTAGCAAACTTTGTTTCAGTTCTCCAAAAGTGCTTCACAGGGTAATGGAAACTAAAAGCCAAGTTTGAGTATTTTTGTGTTTTTTTTATGCAGATTGCATTGGAGGCTTTCCTGATTATCCTTTCAGTTACGCAATTTGTTTATACAGCAATCATGGCGTGGACCTCAACCAGCTAGTAGACTCTAGAAATAGTGTTTTCCTAACGCTTTGTTTGGGTTTCTCTTCATTTTTTTTTTTTCATTTATTTTTCTCAACTTCAAATCTTGGTTGCAATCATGTAAAATGGGAGAAACTTGCAATGTATTGGCAGATGAAGTACAGAAGGTAATATGAGAATTGGTGTGCAAAAAAAGAAGAATAAAATTTCAATGACTTTGATGACTTCATTTGCTCCATAACAGTTTCAACAGTATGCACAAAAAAAATTTCAAGTCTAA

mRNA sequence

CACTCTTCCCCTTTCCAACCAATTCTGACCCCTTTTGGCAAGCAAAGAACCTGACATTCTCCATTAAAATGCTTTCAACAAAATCCCAACTCTCCACAGGATGAACATTCAACTCTAACTCATTCATCTTCATCTCAAAAACCTTCCTTCTTCCATATAAGCCAGTACAAAACATGAAGACGATTGCAGCGGCGATTTTGTTTTTTAATTTCTGCATATGCATCGTCATTTTCGGAATCGGTGGCTGGGTGATGAATCACACAATTGATAATGGATTTGTTATAGGTGCAGGATTTGAAGTTCCTGACTATTTTTCTCCAATTTTCTTCCAAATTGGGAACTCTGCCACTGGGTTTGCTTGGAAAGAGATTGCTCTGACTGTCACCAGTGGCCATCTGATTGCATTGGAGGCTTTCCTGATTATCCTTTCAGTTACGCAATTTGTTTATACAGCAATCATGGCGTGGACCTCAACCAGCTAGTAGACTCTAGAAATAGTGTTTTCCTAACGCTTTGTTTGGGTTTCTCTTCATTTTTTTTTTTTCATTTATTTTTCTCAACTTCAAATCTTGGTTGCAATCATGTAAAATGGGAGAAACTTGCAATGTATTGGCAGATGAAGTACAGAAGGTAATATGAGAATTGGTGTGCAAAAAAAGAAGAATAAAATTTCAATGACTTTGATGACTTCATTTGCTCCATAACAGTTTCAACAGTATGCACAAAAAAAATTTCAAGTCTAA

Coding sequence (CDS)

ATGAAGACGATTGCAGCGGCGATTTTGTTTTTTAATTTCTGCATATGCATCGTCATTTTCGGAATCGGTGGCTGGGTGATGAATCACACAATTGATAATGGATTTGTTATAGGTGCAGGATTTGAAGTTCCTGACTATTTTTCTCCAATTTTCTTCCAAATTGGGAACTCTGCCACTGGGTTTGCTTGGAAAGAGATTGCTCTGACTGTCACCAGTGGCCATCTGATTGCATTGGAGGCTTTCCTGATTATCCTTTCAGTTACGCAATTTGTTTATACAGCAATCATGGCGTGGACCTCAACCAGCTAG

Protein sequence

MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSATGFAWKEIALTVTSGHLIALEAFLIILSVTQFVYTAIMAWTSTS

Homology

[Close]

BLAST of Lsi01G001890 vs. ExPASy TrEMBL
Match: A0A5A7UGF2 (AWPM-19-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G001840 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.3e-37
Identity = 92/153 (60.13%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT 
Sbjct: 1   MKAIAAPILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFDVPNYFSPIFFQIGNSATG 60

Query: 61  --------------------------------------------------GFAWKEIALT 103
                                                             GFAWKEIA+T
Sbjct: 61  FFVIFALIAAVAVVASAISGNFYFRFSDAANLPPAASTALVACFLTFLAMGFAWKEIAMT 120

[Close]

BLAST of Lsi01G001890 vs. ExPASy TrEMBL
Match: A0A5D3CS83 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008640 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.3e-37
Identity = 92/153 (60.13%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT 
Sbjct: 34  MKAIAAPILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFDVPNYFSPIFFQIGNSATG 93

Query: 61  --------------------------------------------------GFAWKEIALT 103
                                                             GFAWKEIA+T
Sbjct: 94  FFVIFALIAAVAVVASAISGNFYFRFSDAANLPPAASTALVACFLTFLAMGFAWKEIAMT 153

[Close]

BLAST of Lsi01G001890 vs. ExPASy TrEMBL
Match: A0A1S3AZB2 (uncharacterized protein LOC103484407 OS=Cucumis melo OX=3656 GN=LOC103484407 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.3e-37
Identity = 92/153 (60.13%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT 
Sbjct: 1   MKAIAAPILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFDVPNYFSPIFFQIGNSATG 60

Query: 61  --------------------------------------------------GFAWKEIALT 103
                                                             GFAWKEIA+T
Sbjct: 61  FFVIFALIAAVAVVASAISGNFYFRYSDAANLPPAASTALVACFLTFLAMGFAWKEIAMT 120

[Close]

BLAST of Lsi01G001890 vs. ExPASy TrEMBL
Match: A0A0A0KNQ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G521030 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 90/153 (58.82%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           MK IAA ILFFNFCIC+VIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT 
Sbjct: 1   MKAIAAPILFFNFCICVVIFGIGGWVMNHTIDNGFVIGAGFDVPNYFSPIFFQIGNSATG 60

Query: 61  --------------------------------------------------GFAWKEIALT 103
                                                             GFAWKEIA+T
Sbjct: 61  FFIIFALIAAVAVVASAITGSFYFRFPETANQPPAASTALVACFLTFLAMGFAWKEIAMT 120

[Close]

BLAST of Lsi01G001890 vs. ExPASy TrEMBL
Match: A0A6J1IM08 (uncharacterized protein LOC111478636 OS=Cucurbita maxima OX=3661 GN=LOC111478636 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 84/153 (54.90%), Postives = 94/153 (61.44%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           M+ IAA+I FFNFCI ++IFGIGGWVMNH+IDNGFVIGA FEVP YFSPIFFQIGN+AT 
Sbjct: 1   MEAIAASISFFNFCISVIIFGIGGWVMNHSIDNGFVIGAEFEVPVYFSPIFFQIGNTATG 60

Query: 61  --------------------------------------------------GFAWKEIALT 103
                                                             GFAWKEI+ T
Sbjct: 61  FFVVFALIAAVATVASVISGSFYFRFSNPNNLPPAASSALIACFLTFLAMGFAWKEISQT 120

[Close]

BLAST of Lsi01G001890 vs. NCBI nr
Match: XP_038882133.1 (uncharacterized protein LOC120073380 isoform X2 [Benincasa hispida])

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-37
Identity = 95/152 (62.50%), Postives = 97/152 (63.82%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           MK IAA ILFFNFCICIVIFGIGGWVMNHT+DNGFVIGAGFEVP YFSPIFFQIGNSAT 
Sbjct: 1   MKAIAAPILFFNFCICIVIFGIGGWVMNHTMDNGFVIGAGFEVPQYFSPIFFQIGNSATG 60

Query: 61  --------------------------------------------------GFAWKEIALT 102
                                                             GFAWKEIALT
Sbjct: 61  FFVIFALIAAVAVVASAISGSFYFRFSDSSNLPPAASTALIACFLTFLAMGFAWKEIALT 120

[Close]

BLAST of Lsi01G001890 vs. NCBI nr
Match: KAA0052579.1 (AWPM-19-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 92/153 (60.13%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT 
Sbjct: 1   MKAIAAPILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFDVPNYFSPIFFQIGNSATG 60

Query: 61  --------------------------------------------------GFAWKEIALT 103
                                                             GFAWKEIA+T
Sbjct: 61  FFVIFALIAAVAVVASAISGNFYFRFSDAANLPPAASTALVACFLTFLAMGFAWKEIAMT 120

[Close]

BLAST of Lsi01G001890 vs. NCBI nr
Match: TYK13246.1 (uncharacterized protein E5676_scaffold255G008640 [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 92/153 (60.13%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT 
Sbjct: 34  MKAIAAPILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFDVPNYFSPIFFQIGNSATG 93

Query: 61  --------------------------------------------------GFAWKEIALT 103
                                                             GFAWKEIA+T
Sbjct: 94  FFVIFALIAAVAVVASAISGNFYFRFSDAANLPPAASTALVACFLTFLAMGFAWKEIAMT 153

[Close]

BLAST of Lsi01G001890 vs. NCBI nr
Match: XP_008439689.1 (PREDICTED: uncharacterized protein LOC103484407 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 92/153 (60.13%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           MK IAA ILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT 
Sbjct: 1   MKAIAAPILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFDVPNYFSPIFFQIGNSATG 60

Query: 61  --------------------------------------------------GFAWKEIALT 103
                                                             GFAWKEIA+T
Sbjct: 61  FFVIFALIAAVAVVASAISGNFYFRYSDAANLPPAASTALVACFLTFLAMGFAWKEIAMT 120

[Close]

BLAST of Lsi01G001890 vs. NCBI nr
Match: XP_004134640.1 (uncharacterized protein LOC101209586 [Cucumis sativus] >KGN49356.1 hypothetical protein Csa_004019 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.4e-36
Identity = 90/153 (58.82%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           MK IAA ILFFNFCIC+VIFGIGGWVMNHTIDNGFVIGAGF+VP+YFSPIFFQIGNSAT 
Sbjct: 1   MKAIAAPILFFNFCICVVIFGIGGWVMNHTIDNGFVIGAGFDVPNYFSPIFFQIGNSATG 60

Query: 61  --------------------------------------------------GFAWKEIALT 103
                                                             GFAWKEIA+T
Sbjct: 61  FFIIFALIAAVAVVASAITGSFYFRFPETANQPPAASTALVACFLTFLAMGFAWKEIAMT 120

[Close]

BLAST of Lsi01G001890 vs. TAIR 10
Match: AT1G29520.1 (AWPM-19-like family protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-17
Identity = 51/145 (35.17%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSAT- 60
           +K +A+ +L  NFC+ +++ GIGGW MN  ID+GF +G   E+P +FSPI+F +GN+AT 
Sbjct: 6   IKPVASGLLVLNFCMYVIVLGIGGWAMNRAIDHGFEVGPNLELPAHFSPIYFPMGNAATG 65

Query: 61  --------------------------------------------------GFAWKEIALT 95
                                                             GFAWKEI L 
Sbjct: 66  FFVIFALLAGVVGAASTISGLSHIRSWTVGSLPAAATAATIAWTLTVLAMGFAWKEIELQ 125

[Close]

BLAST of Lsi01G001890 vs. TAIR 10
Match: AT5G46530.1 (AWPM-19-like family protein )

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-14
Identity = 50/145 (34.48%), Postives = 68/145 (46.90%), Query Frame = 0


Query: 1   MKTIAAAILFFNFCICIVIFGIGGWVMNHTIDNGFVIGAGFEVPDYFSPIFFQIGNSATG 60
           MK +A+ +L  NFC+  ++ GIG W MN  I++GF+IGA + +P +FSPI F +GN+ATG
Sbjct: 6   MKPVASFLLVLNFCMYAIVLGIGAWSMNKAINHGFLIGADYSLPAHFSPIHFPMGNAATG 65

Query: 61  F----------------------------------------AW-----------KEIALT 95
           F                                        AW           KEI L 
Sbjct: 66  FFIMFALIAGVAGAASVISGISHLQSWTTTSLPAAVSAATIAWSLTLLAMGFGCKEIELG 125

The following BLAST results are available for this feature:

BLAST of Lsi01G001890 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G001890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGF2	5.3e-37	60.13	AWPM-19-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120...	[more]
A0A5D3CS83	5.3e-37	60.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AZB2	5.3e-37	60.13	uncharacterized protein LOC103484407 OS=Cucumis melo OX=3656 GN=LOC103484407 PE=...	[more]
A0A0A0KNQ2	1.2e-36	58.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G521030 PE=4 SV=1	[more]
A0A6J1IM08	1.1e-31	54.90	uncharacterized protein LOC111478636 OS=Cucurbita maxima OX=3661 GN=LOC111478636...	[more]

BLAST of Lsi01G001890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882133.1	2.2e-37	62.50	uncharacterized protein LOC120073380 isoform X2 [Benincasa hispida]	[more]
KAA0052579.1	1.1e-36	60.13	AWPM-19-like protein [Cucumis melo var. makuwa]	[more]
TYK13246.1	1.1e-36	60.13	uncharacterized protein E5676_scaffold255G008640 [Cucumis melo var. makuwa]	[more]
XP_008439689.1	1.1e-36	60.13	PREDICTED: uncharacterized protein LOC103484407 [Cucumis melo]	[more]
XP_004134640.1	2.4e-36	58.82	uncharacterized protein LOC101209586 [Cucumis sativus] >KGN49356.1 hypothetical ...	[more]

BLAST of Lsi01G001890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29520.1	2.7e-17	35.17	AWPM-19-like family protein	[more]
AT5G46530.1	3.6e-14	34.48	AWPM-19-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008390	AWPM-19-like	PFAM	PF05512	AWPM-19	coord: 58..96 e-value: 1.3E-7 score: 32.0 coord: 10..61 e-value: 7.6E-11 score: 42.4
IPR008390	AWPM-19-like	PANTHER	PTHR33294	AWPM-19-LIKE FAMILY PROTEIN	coord: 58..100 coord: 1..61
None	No IPR available	PANTHER	PTHR33294:SF6	AWPM-19-LIKE FAMILY PROTEIN	coord: 58..100 coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001890.1	Lsi01G001890.1	mRNA