Lsi01G001870 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G001870
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 1802816 .. 1803649 (-)
RNA-Seq ExpressionLsi01G001870
SyntenyLsi01G001870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTTACAGAGAGAGAAGAGAAAGGTAATTCATCGAACACGAAACTTGTAGAAATCAAGAAGGAAGAAGTAGAAGAAGAAGATTTCGACCTTTGGTTGAACGAAGTGTTGAAGGATTTCGATTCGTTTACTTCATCAATCGATAAAGCTCTGATTAGTGAAGAGGAGGAAGATGCCGAAGAATCGGCGAGGTCAACGAAACGAACAAGAACCAAAGAATCAGACAAAGCAGAATCAATGATAAATAAGGCGGCGAATATGGAGGAAGATGAAACTGAATGGGGAATGGATCCTCTGGACATAACCAAGGAAATAGTATTGAAATACCACGACTTCATTGACGAAATTTATCAAATGTTGAAAGATGAACCGAAAGATGAACGGAAAGAAGTAAAAATCCAATGGCAGAAATGGTGTGGGATTATTGACAGAGCAAATGTCCTGGTTAAGTCTCTGAATCGAAGTCTGAAAACACTGGCTTTCGAAATGGCATGGATGAAATCCATGGATGAATTTAAGAAGGAATATTCTCTCAGAGAAACCCATGTTCCTGATCTAATAGCTTTACTTCGAGACATAAATACACGTATAGAATCTTCCCCTCATTTCAGCCTTGTTTCAGACATAAACATGAGGGGAGAAGTGTTAACACTGTGTTTAGATGAGCTTGAGAGATCCAAGGAAGATTTGACTGAAATGGTTGAAGTAATCGAAGAACTCAAGGAATTAGATTTAGAAGATGAAGAAGATGGAGAATTAGATTTAGATTTAGAATTAGAAGCTGATGAGTTTCAGGAATTAGATTTACCAGATGCTGAAGAAACAGAGTAA

mRNA sequence

ATGACAGTTACAGAGAGAGAAGAGAAAGGTAATTCATCGAACACGAAACTTGTAGAAATCAAGAAGGAAGAAGTAGAAGAAGAAGATTTCGACCTTTGGTTGAACGAAGTGTTGAAGGATTTCGATTCGTTTACTTCATCAATCGATAAAGCTCTGATTAGTGAAGAGGAGGAAGATGCCGAAGAATCGGCGAGGTCAACGAAACGAACAAGAACCAAAGAATCAGACAAAGCAGAATCAATGATAAATAAGGCGGCGAATATGGAGGAAGATGAAACTGAATGGGGAATGGATCCTCTGGACATAACCAAGGAAATAGTATTGAAATACCACGACTTCATTGACGAAATTTATCAAATGTTGAAAGATGAACCGAAAGATGAACGGAAAGAAGTAAAAATCCAATGGCAGAAATGGTGTGGGATTATTGACAGAGCAAATGTCCTGGTTAAGTCTCTGAATCGAAGTCTGAAAACACTGGCTTTCGAAATGGCATGGATGAAATCCATGGATGAATTTAAGAAGGAATATTCTCTCAGAGAAACCCATGTTCCTGATCTAATAGCTTTACTTCGAGACATAAATACACGTATAGAATCTTCCCCTCATTTCAGCCTTGTTTCAGACATAAACATGAGGGGAGAAGTGTTAACACTGTGTTTAGATGAGCTTGAGAGATCCAAGGAAGATTTGACTGAAATGGTTGAAGTAATCGAAGAACTCAAGGAATTAGATTTAGAAGATGAAGAAGATGGAGAATTAGATTTAGATTTAGAATTAGAAGCTGATGAGTTTCAGGAATTAGATTTACCAGATGCTGAAGAAACAGAGTAA

Coding sequence (CDS)

ATGACAGTTACAGAGAGAGAAGAGAAAGGTAATTCATCGAACACGAAACTTGTAGAAATCAAGAAGGAAGAAGTAGAAGAAGAAGATTTCGACCTTTGGTTGAACGAAGTGTTGAAGGATTTCGATTCGTTTACTTCATCAATCGATAAAGCTCTGATTAGTGAAGAGGAGGAAGATGCCGAAGAATCGGCGAGGTCAACGAAACGAACAAGAACCAAAGAATCAGACAAAGCAGAATCAATGATAAATAAGGCGGCGAATATGGAGGAAGATGAAACTGAATGGGGAATGGATCCTCTGGACATAACCAAGGAAATAGTATTGAAATACCACGACTTCATTGACGAAATTTATCAAATGTTGAAAGATGAACCGAAAGATGAACGGAAAGAAGTAAAAATCCAATGGCAGAAATGGTGTGGGATTATTGACAGAGCAAATGTCCTGGTTAAGTCTCTGAATCGAAGTCTGAAAACACTGGCTTTCGAAATGGCATGGATGAAATCCATGGATGAATTTAAGAAGGAATATTCTCTCAGAGAAACCCATGTTCCTGATCTAATAGCTTTACTTCGAGACATAAATACACGTATAGAATCTTCCCCTCATTTCAGCCTTGTTTCAGACATAAACATGAGGGGAGAAGTGTTAACACTGTGTTTAGATGAGCTTGAGAGATCCAAGGAAGATTTGACTGAAATGGTTGAAGTAATCGAAGAACTCAAGGAATTAGATTTAGAAGATGAAGAAGATGGAGAATTAGATTTAGATTTAGAATTAGAAGCTGATGAGTTTCAGGAATTAGATTTACCAGATGCTGAAGAAACAGAGTAA

Protein sequence

MTVTEREEKGNSSNTKLVEIKKEEVEEEDFDLWLNEVLKDFDSFTSSIDKALISEEEEDAEESARSTKRTRTKESDKAESMINKAANMEEDETEWGMDPLDITKEIVLKYHDFIDEIYQMLKDEPKDERKEVKIQWQKWCGIIDRANVLVKSLNRSLKTLAFEMAWMKSMDEFKKEYSLRETHVPDLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDELERSKEDLTEMVEVIEELKELDLEDEEDGELDLDLELEADEFQELDLPDAEETE
Homology
BLAST of Lsi01G001870 vs. ExPASy TrEMBL
Match: A0A5A7UDN3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008660 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 4.3e-73
Identity = 172/282 (60.99%), Postives = 209/282 (74.11%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKEEV-----EEEDFDLWLNEVLKDFDSFTSSIDKALISE 60
           MTVTEREE+GNSSNT +VEIKKE V     E++  D  LN  LKD      S D+  I  
Sbjct: 1   MTVTEREEEGNSSNTNIVEIKKEPVEFDQEEQDGIDALLNLALKD---GCFSDDQLQIDN 60

Query: 61  EEEDAEESARSTKRTRTKESDKAESM-INKAANMEEDETEWGMDPLDITKEIVLKYHDFI 120
           EEED EES RSTKRTRT ESD+AES+ I    N+E ++ E GMDPL++ +EIVLKYHDFI
Sbjct: 61  EEEDTEESERSTKRTRTAESDEAESLAIKNTGNLEANQPELGMDPLEVMEEIVLKYHDFI 120

Query: 121 DEIYQML----KDEPKDERKEVKIQWQKWCGIIDRANVLVKSLNRSLKTLAFEMAWMKSM 180
           +EIYQML    KD+ KDE K+VKIQWQKW GI+DR N+LV+ LNRSLKT+  EM WMKS+
Sbjct: 121 NEIYQMLKDDQKDDQKDEHKKVKIQWQKWRGILDRGNLLVEVLNRSLKTVEIEMEWMKSI 180

Query: 181 DEFKKEYSLRETHVPDLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDELERSKED 240
           +   +EYS+R THVPDL+ALLRDIN RIE SPHF  VSD+  R EVL +CLDELE SKE+
Sbjct: 181 EGLHREYSIRRTHVPDLLALLRDINERIELSPHFKAVSDMTKRDEVLPMCLDELETSKEE 240

Query: 241 LTEMVEVIEELKELDLEDE---EDGELDLDLELEADEFQELD 270
           LTEMVEVI+ELK LDL+ +   EDGE +   E+  DE ++++
Sbjct: 241 LTEMVEVIQELKVLDLDKDEAVEDGERE---EIGIDEIEKVN 276

BLAST of Lsi01G001870 vs. ExPASy TrEMBL
Match: A0A0A0KKJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G521060 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 4.1e-68
Identity = 160/279 (57.35%), Postives = 207/279 (74.19%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKEEVEEEDFDLWLNEVLKDFDSFTSSIDKA--------- 60
           MTVTEREE+GNSSNT +VEIK E VE   F L   E  ++ D+ +S + K          
Sbjct: 1   MTVTEREEEGNSSNTYIVEIKNEPVE---FVLLQQEKQEEIDALSSVLLKGAYFYDDQLQ 60

Query: 61  LISEEEEDAEESARSTKRTRTKESDKAE-SMINKAANMEEDETEWGMDPLDITKEIVLKY 120
           +  E+EEDAEES RSTKR RT ESD+ E S I   A++EE++ E G+DPL++ +EIVLKY
Sbjct: 61  IEIEKEEDAEESERSTKRIRTAESDEVESSSIKNTASLEENQPELGIDPLEVLEEIVLKY 120

Query: 121 HDFIDEIYQMLKDEPKDERKEVKIQWQKWCGIIDRANVLVKSLNRSLKTLAFEMAWMKSM 180
           HDFI+EIYQML    KDE+K+VKIQWQKW  I+D+ N++V+ L RSLKT+  EM WMKS+
Sbjct: 121 HDFINEIYQML----KDEQKKVKIQWQKWRYILDKGNLIVEDLTRSLKTVEIEMEWMKSI 180

Query: 181 DEFKKEYSLRETHVPDLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDELERSKED 240
           DE  +EYS+R+THVPDL+ALLRDIN RIESSP+F +VSD+  R EVL +CLDELE S+E+
Sbjct: 181 DELHREYSIRKTHVPDLLALLRDINERIESSPNFKVVSDMKKRDEVLKMCLDELETSQEE 240

Query: 241 LTEMVEVIEELKELDLEDEEDGELDLDLELEADEFQELD 270
           L EM EVI+ELKELDL+D+E  E   + E++ D  Q+++
Sbjct: 241 LAEMFEVIQELKELDLQDDEAVEDGEEEEIKVDALQKIN 272

BLAST of Lsi01G001870 vs. ExPASy TrEMBL
Match: A0A0A0KIE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G521050 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48
Identity = 161/444 (36.26%), Postives = 207/444 (46.62%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKE------EVEEEDFDLWLNEVLKDFDSFTSSIDKALIS 60
           MT TEREE+GNSS T +VEIK E      E E+ED +  LN  L   D++       +  
Sbjct: 1   MTATEREEEGNSSTTNIVEIKNELVEFEPEPEQEDINGLLN--LASKDAYFYDGQPQIEI 60

Query: 61  EEEEDAEESARSTKRTRTKESDKAE-SMINKAANMEEDETEWGMDPLDITKEIVLKYHDF 120
           E+EEDAEES RSTKR RT E D+ E S I  A+N++ ++ E G+DPL++ +EI+LKYHD 
Sbjct: 61  EKEEDAEESERSTKRIRTAEPDEEESSSIKNASNLDVNQLELGIDPLEVMEEIILKYHDL 120

Query: 121 IDEIYQMLKDEPKDERKE------------------------------------------ 180
           I+EIYQMLKDE KDE+K+                                          
Sbjct: 121 INEIYQMLKDEQKDEQKDKQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQ 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 KDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQ 240

Query: 241 ----------------------------------------------------------VK 278
                                                                     VK
Sbjct: 241 KDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQKDEQEDEQEDEQTDEHKKVK 300

BLAST of Lsi01G001870 vs. ExPASy TrEMBL
Match: A0A5D3CBX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00350 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.5e-29
Identity = 96/263 (36.50%), Postives = 154/263 (58.56%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKEEVEEEDFDLWLNEVLKDFDSFTSSIDKALISEEEE-- 60
           M+ TE E+ GNSSNT + +IKKE ++E++ D+              ++D   ++ EEE  
Sbjct: 1   MSDTENEDSGNSSNTSMADIKKENIQEQEQDI--------------NLDICTLNCEEEID 60

Query: 61  ---DAEESARSTKRTRTKESDKAESMINKAANMEEDE----------TEWGMDPLDITKE 120
               ++E  RS KR R   S++AES      N +E E           E G DPL +T+E
Sbjct: 61  IISTSDELERSPKRPRITGSNEAES---SKKNEQESEYNPDSDTSTFNEIGQDPLLVTEE 120

Query: 121 IVLKYHDFIDEIYQMLKDEPKDERKEVKIQWQKWC-GIIDRANVLVKSLNRSLKTLAFEM 180
           ++LKY++FID +YQ+LK+   DE K      Q W   IIDR + LV +L R L+ +A +M
Sbjct: 121 VLLKYYEFIDYVYQILKN---DEEK------QDWSFEIIDRVDTLVVTLGRRLRVVALDM 180

Query: 181 AWMKSMDEFKKEYSLRETHVPDLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDEL 240
           A ++++DE +  Y  ++TH+P +++ +R +N  I SS  F LVSDI  RG+VL+ CL E 
Sbjct: 181 AGLEAVDELQNIYEFKKTHIPVILSAIRQVNVEIASSSSFRLVSDIKNRGKVLSNCLGEF 237

Query: 241 ERSKEDLTEMVEVIEELKELDLE 248
           ER +++L++ ++ ++ +K   +E
Sbjct: 241 ERWRQELSQRIDAMQPMKRRAME 237

BLAST of Lsi01G001870 vs. ExPASy TrEMBL
Match: A0A0A0KH35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G185210 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.3e-25
Identity = 95/256 (37.11%), Postives = 147/256 (57.42%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKEEVEEEDFDLWLNEVLKDFDSFTSSIDKALISEEEEDA 60
           MT+TE EE  NSSNTK  +IK + +++++ D  +N  +    S   +I+  L +      
Sbjct: 1   MTLTENEENANSSNTKTPDIKNKNIQQQEQD--INLQICASTSQEQNIEIVLTN------ 60

Query: 61  EESARSTKRTRTKESDKAESMINKAANMEEDE-----TEWGMDPLDITKEIVLKYHDFID 120
           EE  RS KR+R  ESD+AES  N   N +E        + G DPL   +EI+LKY+DFI+
Sbjct: 61  EELVRSPKRSRITESDEAESSKN---NEQESYFFLGCEDLGEDPLLEAEEILLKYNDFIE 120

Query: 121 EIYQMLKDEPKDERKEVKIQWQKWCGIIDRANVLVKSLNRSLKTLAFEMAWMKSMDEFKK 180
            +YQ+LK+   DE+K      Q W  I+ R   L   L+  L  L F++  ++    F+K
Sbjct: 121 YVYQILKN---DEKK------QDWSEIVKRVQNLANLLHLKLAVLIFDIECLEQHPRFEK 180

Query: 181 EYSLRETHVPDLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDELERSKEDLTEMV 240
           +Y+ R +H+P++I ++  IN  I SS  FSLV D   R +VL +CL E ER ++ L+ ++
Sbjct: 181 QYNFRLSHIPNIITVIEQINIEIISSKCFSLVLDNKNRRKVLPICLREFERWRQQLSLLI 236

Query: 241 EVIEELKELDLEDEED 252
           E ++ LK++ LE + D
Sbjct: 241 EKVQRLKKMALEIDRD 236

BLAST of Lsi01G001870 vs. NCBI nr
Match: XP_038881500.1 (interaptin-like [Benincasa hispida])

HSP 1 Score: 320.9 bits (821), Expect = 1.1e-83
Identity = 195/300 (65.00%), Postives = 228/300 (76.00%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKEEV------EEEDFDLWLNEVLKDFD--SFTSSIDKAL 60
           MTVTE+ E+ NSSNTK+VEIKKE+V      EE+D DLWLNE++KD D       I+K L
Sbjct: 1   MTVTEKSERANSSNTKVVEIKKEQVEGGEEEEEKDIDLWLNELVKDSDLNDHQLPIEKDL 60

Query: 61  ISEE--EEDAEESARSTKRTRTKESDKAESMINKAANMEEDETEWGMDPLDITKEIVLKY 120
           I+EE  EEDAEE  RSTKRTRT ES     M N AAN E DE+EWG+DPL+IT+EIVLKY
Sbjct: 61  INEEEDEEDAEELERSTKRTRTTES----MMKNTAANAEADESEWGIDPLEITEEIVLKY 120

Query: 121 HDFIDEIYQMLKDEPK------DERKEVKIQWQKWCGIIDRANVLVKSLNRSLKTLAFEM 180
            DFI +I+QMLKDE K      DE  E KIQWQKW  I++RA VLV++LNR L TLA EM
Sbjct: 121 RDFIHDIFQMLKDEQKEDKEKEDEENEAKIQWQKWSEILERAKVLVETLNRGLGTLALEM 180

Query: 181 AWMKSMDEFKKEYSLRETHVPDLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDEL 240
            WMKS+DEF+KEY+LRETHVPDL+ALLRDINT IESS HF LVSD+  R EVL++CLDEL
Sbjct: 181 EWMKSIDEFEKEYTLRETHVPDLLALLRDINTGIESSTHFRLVSDMKNRDEVLSMCLDEL 240

Query: 241 ERSKEDLTEMVEVIEELKELDL-------EDEEDGELDLDLELEADEFQELDLPDAEETE 278
           ERS E+LTEMVEVI+ELKEL+L       ED EDGE +L LELE DE++ELDL   E+TE
Sbjct: 241 ERSNEELTEMVEVIQELKELELQDVEEDGEDGEDGEDELVLELEDDEYEELDLEVDEKTE 296

BLAST of Lsi01G001870 vs. NCBI nr
Match: KAA0052577.1 (hypothetical protein E6C27_scaffold120G001820 [Cucumis melo var. makuwa] >TYK13248.1 hypothetical protein E5676_scaffold255G008660 [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 8.8e-73
Identity = 172/282 (60.99%), Postives = 209/282 (74.11%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKEEV-----EEEDFDLWLNEVLKDFDSFTSSIDKALISE 60
           MTVTEREE+GNSSNT +VEIKKE V     E++  D  LN  LKD      S D+  I  
Sbjct: 1   MTVTEREEEGNSSNTNIVEIKKEPVEFDQEEQDGIDALLNLALKD---GCFSDDQLQIDN 60

Query: 61  EEEDAEESARSTKRTRTKESDKAESM-INKAANMEEDETEWGMDPLDITKEIVLKYHDFI 120
           EEED EES RSTKRTRT ESD+AES+ I    N+E ++ E GMDPL++ +EIVLKYHDFI
Sbjct: 61  EEEDTEESERSTKRTRTAESDEAESLAIKNTGNLEANQPELGMDPLEVMEEIVLKYHDFI 120

Query: 121 DEIYQML----KDEPKDERKEVKIQWQKWCGIIDRANVLVKSLNRSLKTLAFEMAWMKSM 180
           +EIYQML    KD+ KDE K+VKIQWQKW GI+DR N+LV+ LNRSLKT+  EM WMKS+
Sbjct: 121 NEIYQMLKDDQKDDQKDEHKKVKIQWQKWRGILDRGNLLVEVLNRSLKTVEIEMEWMKSI 180

Query: 181 DEFKKEYSLRETHVPDLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDELERSKED 240
           +   +EYS+R THVPDL+ALLRDIN RIE SPHF  VSD+  R EVL +CLDELE SKE+
Sbjct: 181 EGLHREYSIRRTHVPDLLALLRDINERIELSPHFKAVSDMTKRDEVLPMCLDELETSKEE 240

Query: 241 LTEMVEVIEELKELDLEDE---EDGELDLDLELEADEFQELD 270
           LTEMVEVI+ELK LDL+ +   EDGE +   E+  DE ++++
Sbjct: 241 LTEMVEVIQELKVLDLDKDEAVEDGERE---EIGIDEIEKVN 276

BLAST of Lsi01G001870 vs. NCBI nr
Match: KGN49359.1 (hypothetical protein Csa_002997 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 8.6e-68
Identity = 160/279 (57.35%), Postives = 207/279 (74.19%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKEEVEEEDFDLWLNEVLKDFDSFTSSIDKA--------- 60
           MTVTEREE+GNSSNT +VEIK E VE   F L   E  ++ D+ +S + K          
Sbjct: 1   MTVTEREEEGNSSNTYIVEIKNEPVE---FVLLQQEKQEEIDALSSVLLKGAYFYDDQLQ 60

Query: 61  LISEEEEDAEESARSTKRTRTKESDKAE-SMINKAANMEEDETEWGMDPLDITKEIVLKY 120
           +  E+EEDAEES RSTKR RT ESD+ E S I   A++EE++ E G+DPL++ +EIVLKY
Sbjct: 61  IEIEKEEDAEESERSTKRIRTAESDEVESSSIKNTASLEENQPELGIDPLEVLEEIVLKY 120

Query: 121 HDFIDEIYQMLKDEPKDERKEVKIQWQKWCGIIDRANVLVKSLNRSLKTLAFEMAWMKSM 180
           HDFI+EIYQML    KDE+K+VKIQWQKW  I+D+ N++V+ L RSLKT+  EM WMKS+
Sbjct: 121 HDFINEIYQML----KDEQKKVKIQWQKWRYILDKGNLIVEDLTRSLKTVEIEMEWMKSI 180

Query: 181 DEFKKEYSLRETHVPDLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDELERSKED 240
           DE  +EYS+R+THVPDL+ALLRDIN RIESSP+F +VSD+  R EVL +CLDELE S+E+
Sbjct: 181 DELHREYSIRKTHVPDLLALLRDINERIESSPNFKVVSDMKKRDEVLKMCLDELETSQEE 240

Query: 241 LTEMVEVIEELKELDLEDEEDGELDLDLELEADEFQELD 270
           L EM EVI+ELKELDL+D+E  E   + E++ D  Q+++
Sbjct: 241 LAEMFEVIQELKELDLQDDEAVEDGEEEEIKVDALQKIN 272

BLAST of Lsi01G001870 vs. NCBI nr
Match: XP_011658523.2 (rho GTPase-activating protein gacV [Cucumis sativus] >KAE8647736.1 hypothetical protein Csa_004393 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-60
Identity = 160/332 (48.19%), Postives = 206/332 (62.05%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKE------EVEEEDFDLWLNEVLKDFDSFTSSIDKALIS 60
           MT TEREE+GNSS T +VEIK E      E E+ED +  LN  L   D++       +  
Sbjct: 1   MTATEREEEGNSSTTNIVEIKNELVEFEPEPEQEDINGLLN--LASKDAYFYDGQPQIEI 60

Query: 61  EEEEDAEESARSTKRTRTKESDKAE-SMINKAANMEEDETEWGMDPLDITKEIVLKYHDF 120
           E+EEDAEES RSTKR RT E D+ E S I  A+N++ ++ E G+DPL++ +EI+LKYHD 
Sbjct: 61  EKEEDAEESERSTKRIRTAEPDEEESSSIKNASNLDVNQLELGIDPLEVMEEIILKYHDL 120

Query: 121 IDEIYQMLKDEPKDERKE------------------------------------------ 180
           I+EIYQMLKDE KDE+K+                                          
Sbjct: 121 INEIYQMLKDEQKDEQKDKQKDEQKDEQKDEQKDEQKDEQQDEQKDEQKDEQEDEQEDEQ 180

Query: 181 ------VKIQWQKWCGIIDRANVLVKSLNRSLKTLAFEMAWMKSMDEFKKEYSLRETHVP 240
                 VKIQWQKW  I+D+ N++V+ LN SLKT+  EM WMKS+DE  +EYS+R+THVP
Sbjct: 181 TDEHKKVKIQWQKWRDILDKGNLMVEDLNGSLKTVEIEMEWMKSVDELHREYSIRKTHVP 240

Query: 241 DLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDELERSKEDLTEMVEVIEELKELD 278
           DL+ALLRDIN RIESSP+F +VSD+  R  VL +CLDELE S+E+L EMVEVI+ELKEL 
Sbjct: 241 DLLALLRDINERIESSPNFKVVSDMKKRDGVLKMCLDELETSQEELAEMVEVIQELKELH 300

BLAST of Lsi01G001870 vs. NCBI nr
Match: XP_038902312.1 (myelin transcription factor 1-like [Benincasa hispida])

HSP 1 Score: 208.4 bits (529), Expect = 8.1e-50
Identity = 133/278 (47.84%), Postives = 189/278 (67.99%), Query Frame = 0

Query: 1   MTVTEREEKGNSSNTKLVEIKKEEVEEEDFDLWLNEVLKDFDSFTSSIDKALISEEEEDA 60
           MTV EREE+GNSSNTK+ E KK+ VEEE+ D+ L        +  + I K  I+EE +D 
Sbjct: 1   MTVREREERGNSSNTKVAENKKQNVEEEEEDINLQ---IGASNSQNQIKKVRITEESKDG 60

Query: 61  EESARSTKRTRTKESDKAESMINKAANMEEDETEWGMDPLDITKEIVLKYHDFIDEIY-Q 120
           EES RS+KR+R KES++AES IN+    E D +E G DPL  T+EIV++YHDFID IY Q
Sbjct: 61  EESERSSKRSRIKESEEAESTINEEEE-ESDSSEVGKDPLLATEEIVMEYHDFIDYIYHQ 120

Query: 121 MLKDEPKDERKEVKIQWQKWCGIIDRANVLVKSLNRSLKTLAFEMAWMKSMDEFKKEYSL 180
           +LK++            QKW  I++R  +LVK++NRSL+T+  EM  ++++++F+K+Y  
Sbjct: 121 ILKEDE-----------QKWSEIVERGKLLVKTVNRSLRTVKLEMECIEAVEDFEKQYLF 180

Query: 181 RETHVPDLIALLRDINTRIESSPHFSLVSDINMRGEVLTLCLDELERSKEDLTEMVEVIE 240
           R+TH+P +++LLR IN+RIESS +F LVS+I  R +VL +CL ELE SK++L+EM++VI+
Sbjct: 181 RKTHIPQILSLLRHINSRIESSTNFRLVSNIKNRRKVLPMCLRELETSKQELSEMIDVIQ 240

Query: 241 ELKELDLEDEEDGELDLDLELEADEFQELDLPDAEETE 278
            LKELDL+ E+D +             + D  D EETE
Sbjct: 241 VLKELDLKSEDDDD-------------DADDDDEEETE 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UDN34.3e-7360.99Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KKJ14.1e-6857.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G521060 PE=4 SV=1[more]
A0A0A0KIE81.3e-4836.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G521050 PE=4 SV=1[more]
A0A5D3CBX06.5e-2936.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KH353.3e-2537.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G185210 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038881500.11.1e-8365.00interaptin-like [Benincasa hispida][more]
KAA0052577.18.8e-7360.99hypothetical protein E6C27_scaffold120G001820 [Cucumis melo var. makuwa] >TYK132... [more]
KGN49359.18.6e-6857.35hypothetical protein Csa_002997 [Cucumis sativus][more]
XP_011658523.21.7e-6048.19rho GTPase-activating protein gacV [Cucumis sativus] >KAE8647736.1 hypothetical ... [more]
XP_038902312.18.1e-5047.84myelin transcription factor 1-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 221..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G001870.1Lsi01G001870.1mRNA