Lsi01G001670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription factor bHLH144
Location	chr01: 1654808 .. 1657998 (-)
RNA-Seq Expression	Lsi01G001670
Synteny	Lsi01G001670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTTCCTGCCAGATCTTTAGCTTGCAGACCAAATCTGGGCACTGATCTACCGAACTCTTACGAAAAATCGTCCGATCGTCTTCGTTTTTCTGCCTGATTTAGCTCTGGAATCACGTGGGTGAAATTTTTTGTTTCATTTTTTGAGGAAACTTGTTTGTTTTTCCGTTTCATTTAGCTTACTGTAATGGAGCTAGGGCACGTTTGATTTTTTCGGGTTCTCTTAATTGCTGGATGCGTACTGGGAGAACTTAATTTTCGAGTGATTTGTACTTCCCTGAGTTTATTGTTCTGCTATTTTTGTTCTTTCTTTTCTGTAATTATTGTTGTTGTCTGGGGTTCTCTTTCGTAGTGCTTTCCTAAATTTAACTTAAAATTACTGTGTTATTGATTCTGATCTCGTTGATCTGTCATGTTTTTCTCTGTGTTTTTGGGTTATTTTATACTTGATTCCTTTTCGTCTCATGTATGATACTGAGAAAATTTGATAAAATGAATGATTTCGATGGTCGGTCAGGTTCTGTTCAGGGGAGAACTTCTAACCTAGATTATCGAGTACTTCCATCTTTTAACCTGTAATTATGCATACAGACATTTGTTTGCTTAACGTTATTACACTTAACTGTCTTGGTTTTGGTCATTGGGTGTTCTGTCTAGATATGCTTGTTGATCAGTAGCGTTTGTTACATTTGTTAAATTGTACTTAATGTTTCTCTTTTGCTTGCTTTACCCTGCAGTTTAGGATTGGGTTCGTCTTTGTATTAAGTGGAATTGGAGAATAGAATCAAAATGCCGTGGACATCCTCCTTGGTGAATTACAGCAGCAAGTGTGTTCGCTTGGTGGTCTTCTTTCGTGTCATTCTGTAATTTGTTTTGGATTGGTGAGTTTTCTGGAACGAATACAATTGTGTTGATTATTACCATACTTGATTAGACGTCTAAGAAGTTGTTTTGGAGGAAGAATATTTTTCTTTTTGGTATGTCGAAACAATGATCATTCACAGGCCTTGTATTCACTTGCCAATGCTAGGAGTTTCATGGGCTCTGCTGGATTTAACTTTTCTGTTTTTGGAAGGTTTAGTGATCATTTTAAGGATCGCCCATGGAATAATATTATTAATTTTGTTTATTTGTTAATTTTATTGTCGTGCTTGTGAAATTTGGGAAGTTCTTAAGCTCTTTGCTTATGGTTGGGTGCAGGGGGGAATTCAAACGTTAACTTTGCTGGTCTATCTTACTTTTGTGGCTGTTCACTTTTATATTACTGGTTGGAGGAGTGAGAATGTACATTGGTATAACGGGAAAGAGAAACAGAGCTGTCGAGGAAATTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGTAAACCACAATCTTTAAATTTTACACTGCGGTGCTTTGTTTGTTGTTTACACTTCATACGTTTGAAGTGTCTGAAATTTAATGTTGTTAGTTGTCTCTTTATTCATCTCAGAAATATCTTTCAACTTTAGAGTTTTGATTTATTTTCTAAGTACATGCATCGTAGCTCCTATTTTTTCTCCTCAGCCTTTCACCAAGTAGCTATAGTTAATAAATAATAAGTATTGATAAGGGGAGTTTGTACTTGCAACAATATTGTAAATACTGGTGTTTAGTTCAAATCTTATTTCTTTTGATTGTTTAATAGCTAAACTAAGGTATTATTGTACATTTTCCGAATATTAAGCATCCATATGCATTTTGTCATGTTAAAGATAAGTTTTTTGCTTTCTCCTCTCATCTGGTTTAGGGTTTAGGGTTTATGTTTACTGTATCTCAAAGAAGTAACTTTGTTTTGTAGCTGTTGACACTCGTTCGGAGTTCTGGATATGTGTGAAATTTGTACTTAAAAAAATTGGCTACTGGTGAATTGTTGAATTATTGCGGCAAATCCTTTTATCCATAATTGAATTCCTAAAGCACATCATTGAATGAACTAATAATACATTCTGTGATCATTTGATTGTCTTTACTGCTTCTGTTGTTGGACTACTAAAGCACATCTTTAAGTCTACTGTTATTGACGACTTTCAATTTGTTCTTTACAGGCCGAGTATTTTCGCCAGTTGCTAAAACCTGTCACGTAGGATAACATTGCAAAAAGCATTTGGGCATTGGGGAGTTAGGTGGACTGGCCTCCAGTTGTGCTAGAACTGAAGAAATGAAATATTTCTTTCCTGTTTGTCTTTAATTTGATATAAAGATCTCGCTTAAATTTAAATGGCAACATATAGAGTTGCTGTGTAGTCTTCTCGTTAGTTAACATCCCGTTTTAATTTTCGTAATATAATAGCAAGCTCTCCTGGGAGAAGACACAGTGACTCGAAGTTTGGAGAGTTTCCCGTTTGTTTGTTTGTTTTATATGGACTTCATGCAGAGTGACCTCAACTTTTACCTCAAGAAGGCAATGCGTCCCACAGCAAACCAGGGGGACGATAATCACATGCAGATTCCTCTGTCATCTGCCTTTCCTTCTGTTTTGCCTCCTGGAAGAAAGAACTTGGGACCTTTCAATACTGTTGAGTTTCAACCTTCTGAAGTATGTCCCCAAAATTTCATCATCTTTGACCACACTGACAATCGAAGCCAAATCATGTTTCATCCTGCAATTGCCAACAAACTCAGTGGTCCTACTGCGAATATGTGCTCAAAGTACATCCAAAAGAACTTCTGCGTCAATGACGAGCATTATGAAGATAGAGAAATATCATCCCCTTTGATGGAGGATTTGGATGATATCGATGCACTATTGAGCTTGGAAGACGAAGATCACGAAGACCTTGATGGATCTGAAGATGAAGAGATCAGCACTGCAAGATCTCATTTGAATTATGGCAATCGATCCCCTGATTCTTCATCCTCCTCTTATAGTTCAAAACCCAGGAAGAATCAGTCATTTAATCCCGTCCACAAGTCGTCAAGCAGCGGAAGCAGCTGCAACAGTGACATGAAACAGTTAAAAGTGAAGAAAATGGTGAGAAAACTACGAGAGATTCTCCCTGGTGGTTACCAAATGACGACAGTCACTGTCCTGGACGAAGCTGTTAAATACCTGAAATCTCTGAAGGACGAAGTGCAGAAACTCGGAGTCGGGGGCTTGGAGAAC

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTTCCTGCCAGATCTTTAGCTTGCAGACCAAATCTGGGCACTGATCTACCGAACTCTTACGAAAAATCGTCCGATCGTCTTCGTTTTTCTGCCTGATTTAGCTCTGGAATCACTTTAGGATTGGGTTCGTCTTTGTATTAAGTGGAATTGGAGAATAGAATCAAAATGCCGTGGACATCCTCCTTGGTGAATTACAGCAGCAAGTGTGTTCGCTTGGTGGTCTTCTTTCGTGTCATTCTGTAATTTGTTTTGGATTGGGGGGAATTCAAACGTTAACTTTGCTGGTCTATCTTACTTTTGTGGCTGTTCACTTTTATATTACTGGTTGGAGGAGTGAGAATGTACATTGGTATAACGGGAAAGAGAAACAGAGCTGTCGAGGAAATTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGCCGAGTATTTTCGCCAGTTGCTAAAACCTGTCACCTCTCCTGGGAGAAGACACAGTGACTCGAAGTTTGGAGAGTTTCCCAGTGACCTCAACTTTTACCTCAAGAAGGCAATGCGTCCCACAGCAAACCAGGGGGACGATAATCACATGCAGATTCCTCTGTCATCTGCCTTTCCTTCTGTTTTGCCTCCTGGAAGAAAGAACTTGGGACCTTTCAATACTGTTGAGTTTCAACCTTCTGAAGTATGTCCCCAAAATTTCATCATCTTTGACCACACTGACAATCGAAGCCAAATCATGTTTCATCCTGCAATTGCCAACAAACTCAGTGGTCCTACTGCGAATATGTGCTCAAAGTACATCCAAAAGAACTTCTGCGTCAATGACGAGCATTATGAAGATAGAGAAATATCATCCCCTTTGATGGAGGATTTGGATGATATCGATGCACTATTGAGCTTGGAAGACGAAGATCACGAAGACCTTGATGGATCTGAAGATGAAGAGATCAGCACTGCAAGATCTCATTTGAATTATGGCAATCGATCCCCTGATTCTTCATCCTCCTCTTATAGTTCAAAACCCAGGAAGAATCAGTCATTTAATCCCGTCCACAAGTCGTCAAGCAGCGGAAGCAGCTGCAACAGTGACATGAAACAGTTAAAAGTGAAGAAAATGGTGAGAAAACTACGAGAGATTCTCCCTGGTGGTTACCAAATGACGACAGTCACTGTCCTGGACGAAGCTGTTAAATACCTGAAATCTCTGAAGGACGAAGTGCAGAAACTCGGAGTCGGGGGCTTGGAGAAC

Coding sequence (CDS)

ATGTACATTGGTATAACGGGAAAGAGAAACAGAGCTGTCGAGGAAATTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGCCGAGTATTTTCGCCAGTTGCTAAAACCTGTCACCTCTCCTGGGAGAAGACACAGTGACTCGAAGTTTGGAGAGTTTCCCAGTGACCTCAACTTTTACCTCAAGAAGGCAATGCGTCCCACAGCAAACCAGGGGGACGATAATCACATGCAGATTCCTCTGTCATCTGCCTTTCCTTCTGTTTTGCCTCCTGGAAGAAAGAACTTGGGACCTTTCAATACTGTTGAGTTTCAACCTTCTGAAGTATGTCCCCAAAATTTCATCATCTTTGACCACACTGACAATCGAAGCCAAATCATGTTTCATCCTGCAATTGCCAACAAACTCAGTGGTCCTACTGCGAATATGTGCTCAAAGTACATCCAAAAGAACTTCTGCGTCAATGACGAGCATTATGAAGATAGAGAAATATCATCCCCTTTGATGGAGGATTTGGATGATATCGATGCACTATTGAGCTTGGAAGACGAAGATCACGAAGACCTTGATGGATCTGAAGATGAAGAGATCAGCACTGCAAGATCTCATTTGAATTATGGCAATCGATCCCCTGATTCTTCATCCTCCTCTTATAGTTCAAAACCCAGGAAGAATCAGTCATTTAATCCCGTCCACAAGTCGTCAAGCAGCGGAAGCAGCTGCAACAGTGACATGAAACAGTTAAAAGTGAAGAAAATGGTGAGAAAACTACGAGAGATTCTCCCTGGTGGTTACCAAATGACGACAGTCACTGTCCTGGACGAAGCTGTTAAATACCTGAAATCTCTGAAGGACGAAGTGCAGAAACTCGGAGTCGGGGGCTTGGAGAAC

Protein sequence

MYIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVTSPGRRHSDSKFGEFPSDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYEDREISSPLMEDLDDIDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSSYSSKPRKNQSFNPVHKSSSSGSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVGGLEN

Homology

[Close]

BLAST of Lsi01G001670 vs. ExPASy Swiss-Prot
Match: Q9ASX9 (Transcription factor bHLH144 OS=Arabidopsis thaliana OX=3702 GN=BHLH144 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.9e-36
Identity = 106/239 (44.35%), Postives = 145/239 (60.67%), Query Frame = 0


Query: 81  GDDN-HMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNFIIFDHTDNRSQIMFHP 140
           GD N H      S++ ++ PP  K   P++ VE QPS VCP+NF+IFD T +RSQ+M+HP
Sbjct: 14  GDRNMHNPYASGSSYDALFPPCAKL--PYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHP 73

Query: 141 AIANKL-SGPTANMCSKYIQKNFC----VNDEHYEDREISSPLMEDLDDIDALLSLED-- 200
            + +KL + P+ N  +   Q  +      N  +YE +E+SS   ED ++IDALLS ++  
Sbjct: 74  ELTHKLMNTPSLNNLASTFQNEYVGGSYGNYGNYE-QEVSSSYQEDPNEIDALLSADEDY 133

Query: 201 EDHEDLDGSED----EEISTAR-SHLNYGNRSPDSSSSSYSSKPRKNQSFNPVHKSSSSG 260
           E+++D +G ED    EE+STAR S  +YGN + +S  SSY      N +      S S+ 
Sbjct: 134 EENDDNEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSSYGYNNNNNNNSRKQSLSGSAS 193

Query: 261 SSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVGGLEN 307
           SS N    + K+KKM+  LR I+PGG QM T  VLDEAV+YLKSLK E QKLGVG   N
Sbjct: 194 SSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKIEAQKLGVGHFSN 249

[Close]

BLAST of Lsi01G001670 vs. ExPASy TrEMBL
Match: A0A5A7UBJ4 (Transcription factor bHLH144 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008860 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 3.8e-139
Identity = 264/307 (85.99%), Postives = 272/307 (88.60%), Query Frame = 0


Query: 1   MYIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVTSPGRRHSDSKFG 60
           MYIGITGKR+RAVEEIGKVNMSVGIIAYYQVMQVCQ                        
Sbjct: 1   MYIGITGKRSRAVEEIGKVNMSVGIIAYYQVMQVCQ------------------------ 60

Query: 61  EFPSDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCP 120
              SDLNFYLKKA  PTA QGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCP
Sbjct: 61  ---SDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCP 120

Query: 121 QNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYEDREISSPLMED 180
           QNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVND HYEDREISSPLMED
Sbjct: 121 QNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDNHYEDREISSPLMED 180

Query: 181 LDDIDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSS-YSSKPRKNQSFNP 240
           LDDIDALLSLE+E+HE LDGSED+E+STARSHLNYGN+SPDSSSSS YSSKPRKN SFNP
Sbjct: 181 LDDIDALLSLENENHEGLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSFNP 240

Query: 241 VHKSSSSGSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKL 300
           VHKSSSSGSSC+SDMKQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDEVQKL
Sbjct: 241 VHKSSSSGSSCSSDMKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKL 280

Query: 301 GVGGLEN 307
           GVGGLEN
Sbjct: 301 GVGGLEN 280

[Close]

BLAST of Lsi01G001670 vs. ExPASy TrEMBL
Match: A0A1S3AYV1 (transcription factor bHLH144 OS=Cucumis melo OX=3656 GN=LOC103484384 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.7e-123
Identity = 230/244 (94.26%), Postives = 237/244 (97.13%), Query Frame = 0


Query: 64  SDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 123
           SDLNFYLKKA  PTA QGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF
Sbjct: 6   SDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 65

Query: 124 IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYEDREISSPLMEDLDD 183
           IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVND HYEDREISSPLMEDLDD
Sbjct: 66  IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDNHYEDREISSPLMEDLDD 125

Query: 184 IDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSS-YSSKPRKNQSFNPVHK 243
           IDALLSLE+E+HE LDGSED+E+STARSHLNYGN+SPDSSSSS YSSKPRKN SFNPVHK
Sbjct: 126 IDALLSLENENHEGLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSFNPVHK 185

Query: 244 SSSSGSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVG 303
           SSSSGSSC+SDMKQLK+KKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVG
Sbjct: 186 SSSSGSSCSSDMKQLKLKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVG 245

Query: 304 GLEN 307
           GLEN
Sbjct: 246 GLEN 249

[Close]

BLAST of Lsi01G001670 vs. ExPASy TrEMBL
Match: A0A0A0KLX4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522710 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 3.8e-123
Identity = 228/244 (93.44%), Postives = 238/244 (97.54%), Query Frame = 0


Query: 64  SDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 123
           SDLNFYLKKA  PTA QGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF
Sbjct: 6   SDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 65

Query: 124 IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYEDREISSPLMEDLDD 183
           IIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNFCVND+H+EDREISSPLMEDLDD
Sbjct: 66  IIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLMEDLDD 125

Query: 184 IDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSS-YSSKPRKNQSFNPVHK 243
           IDALLSLE+E+HEDLDGSED+E+STARSHLNYGN+SPDSSSSS YSSKPRKN SFNPVHK
Sbjct: 126 IDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSFNPVHK 185

Query: 244 SSSSGSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVG 303
           SSSSGSSCNSD+KQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDEVQKLGVG
Sbjct: 186 SSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKLGVG 245

Query: 304 GLEN 307
           GLEN
Sbjct: 246 GLEN 249

[Close]

BLAST of Lsi01G001670 vs. ExPASy TrEMBL
Match: A0A6J1EDR8 (transcription factor bHLH144-like OS=Cucurbita moschata OX=3662 GN=LOC111433273 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.7e-118
Identity = 227/245 (92.65%), Postives = 234/245 (95.51%), Query Frame = 0


Query: 64  SDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 123
           SDLN YLK AM PTANQG DNHMQIPLSSA+PSVLPPGR NLGPFNTVEFQPSEVCPQNF
Sbjct: 6   SDLNCYLKNAMLPTANQGGDNHMQIPLSSAYPSVLPPGRNNLGPFNTVEFQPSEVCPQNF 65

Query: 124 IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYED-REISSPLMEDLD 183
           IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNF VNDEH +D REISSPLMEDLD
Sbjct: 66  IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPLMEDLD 125

Query: 184 DIDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSSYSSKPRKNQSFNPVHK 243
           DIDALLSL+DEDHED+DGSEDEEISTARSHLNYGN+SPDSSSSSYSSKPRKN+SFNPVHK
Sbjct: 126 DIDALLSLDDEDHEDIDGSEDEEISTARSHLNYGNQSPDSSSSSYSSKPRKNRSFNPVHK 185

Query: 244 SSSSG-SSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGV 303
            SSSG SS +SDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGV
Sbjct: 186 LSSSGRSSRDSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGV 245

Query: 304 GGLEN 307
           GGLEN
Sbjct: 246 GGLEN 250

[Close]

BLAST of Lsi01G001670 vs. ExPASy TrEMBL
Match: A0A6J1INB7 (transcription factor bHLH144-like OS=Cucurbita maxima OX=3661 GN=LOC111477984 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 5.3e-117
Identity = 227/245 (92.65%), Postives = 231/245 (94.29%), Query Frame = 0


Query: 64  SDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 123
           SDLN YLK  M PTANQG DNHMQIPLSSAFPSVLP GR NLGPFNTVEFQPSEVCPQNF
Sbjct: 6   SDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEVCPQNF 65

Query: 124 IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYED-REISSPLMEDLD 183
           IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNF VNDEH +D REISSPLMEDLD
Sbjct: 66  IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPLMEDLD 125

Query: 184 DIDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSSYSSKPRKNQSFNPVHK 243
           DIDALLSLEDEDHED+DG EDEEISTARSHLNYGN+SPD SSSSYSS+PRKNQSFNPVHK
Sbjct: 126 DIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPD-SSSSYSSEPRKNQSFNPVHK 185

Query: 244 SSSSG-SSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGV 303
            SSSG SSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGV
Sbjct: 186 LSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGV 245

Query: 304 GGLEN 307
           GGLEN
Sbjct: 246 GGLEN 249

[Close]

BLAST of Lsi01G001670 vs. NCBI nr
Match: KAA0052558.1 (transcription factor bHLH144 [Cucumis melo var. makuwa] >TYK13268.1 transcription factor bHLH144 [Cucumis melo var. makuwa])

HSP 1 Score: 504.2 bits (1297), Expect = 7.8e-139
Identity = 264/307 (85.99%), Postives = 272/307 (88.60%), Query Frame = 0


Query: 1   MYIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVTSPGRRHSDSKFG 60
           MYIGITGKR+RAVEEIGKVNMSVGIIAYYQVMQVCQ                        
Sbjct: 1   MYIGITGKRSRAVEEIGKVNMSVGIIAYYQVMQVCQ------------------------ 60

Query: 61  EFPSDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCP 120
              SDLNFYLKKA  PTA QGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCP
Sbjct: 61  ---SDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCP 120

Query: 121 QNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYEDREISSPLMED 180
           QNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVND HYEDREISSPLMED
Sbjct: 121 QNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDNHYEDREISSPLMED 180

Query: 181 LDDIDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSS-YSSKPRKNQSFNP 240
           LDDIDALLSLE+E+HE LDGSED+E+STARSHLNYGN+SPDSSSSS YSSKPRKN SFNP
Sbjct: 181 LDDIDALLSLENENHEGLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSFNP 240

Query: 241 VHKSSSSGSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKL 300
           VHKSSSSGSSC+SDMKQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDEVQKL
Sbjct: 241 VHKSSSSGSSCSSDMKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKL 280

Query: 301 GVGGLEN 307
           GVGGLEN
Sbjct: 301 GVGGLEN 280

[Close]

BLAST of Lsi01G001670 vs. NCBI nr
Match: KAG7034698.1 (Transcription factor bHLH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 491.1 bits (1263), Expect = 6.9e-135
Identity = 261/307 (85.02%), Postives = 269/307 (87.62%), Query Frame = 0


Query: 1   MYIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVTSPGRRHSDSKFG 60
           MYIGITGKRNRAV+E+GKVNMSVGIIAYYQVMQVCQ                        
Sbjct: 1   MYIGITGKRNRAVKEVGKVNMSVGIIAYYQVMQVCQ------------------------ 60

Query: 61  EFPSDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCP 120
              SDLN YLK AM PTANQG DNHMQIPLSSA+ SVLPPGR NLGPFNTVEFQPSEVCP
Sbjct: 61  ---SDLNCYLKNAMLPTANQGGDNHMQIPLSSAYASVLPPGRNNLGPFNTVEFQPSEVCP 120

Query: 121 QNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYEDREISSPLMED 180
           QNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNF VNDEH +DREISSPLMED
Sbjct: 121 QNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDREISSPLMED 180

Query: 181 LDDIDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSSYSSKPRKNQSFNPV 240
           LDDIDALLSLEDEDHED+DGSEDEEISTARSHLNYGN+SPDSSSSSYSSKPRKN+SFNPV
Sbjct: 181 LDDIDALLSLEDEDHEDIDGSEDEEISTARSHLNYGNQSPDSSSSSYSSKPRKNRSFNPV 240

Query: 241 HKSSSSG-SSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKL 300
           HK SSSG SS +SDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKL
Sbjct: 241 HKLSSSGRSSRDSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKL 280

Query: 301 GVGGLEN 307
           GVGGLEN
Sbjct: 301 GVGGLEN 280

[Close]

BLAST of Lsi01G001670 vs. NCBI nr
Match: XP_038881999.1 (transcription factor bHLH144 [Benincasa hispida])

HSP 1 Score: 463.0 bits (1190), Expect = 2.0e-126
Identity = 233/243 (95.88%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 64  SDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 123
           SDLNFYLK+AM P ANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFN VEFQPSEVCPQNF
Sbjct: 6   SDLNFYLKQAMHPRANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNNVEFQPSEVCPQNF 65

Query: 124 IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYEDREISSPLMEDLDD 183
           IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFC+NDEHYEDREISSPLMEDLDD
Sbjct: 66  IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCINDEHYEDREISSPLMEDLDD 125

Query: 184 IDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSSYSSKPRKNQSFNPVHKS 243
           IDALLSL+DEDHEDLDGSEDEE STARSHLNYGN+SPDSSSSSYSSKPRKN+SFNPVHKS
Sbjct: 126 IDALLSLDDEDHEDLDGSEDEERSTARSHLNYGNQSPDSSSSSYSSKPRKNKSFNPVHKS 185

Query: 244 SSSGSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVGG 303
           SSSGSSC+SDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVGG
Sbjct: 186 SSSGSSCDSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVGG 245

Query: 304 LEN 307
           LEN
Sbjct: 246 LEN 248

[Close]

BLAST of Lsi01G001670 vs. NCBI nr
Match: XP_008439654.1 (PREDICTED: transcription factor bHLH144 [Cucumis melo] >XP_008439656.1 PREDICTED: transcription factor bHLH144 [Cucumis melo])

HSP 1 Score: 452.2 bits (1162), Expect = 3.5e-123
Identity = 230/244 (94.26%), Postives = 237/244 (97.13%), Query Frame = 0


Query: 64  SDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 123
           SDLNFYLKKA  PTA QGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF
Sbjct: 6   SDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 65

Query: 124 IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYEDREISSPLMEDLDD 183
           IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVND HYEDREISSPLMEDLDD
Sbjct: 66  IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDNHYEDREISSPLMEDLDD 125

Query: 184 IDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSS-YSSKPRKNQSFNPVHK 243
           IDALLSLE+E+HE LDGSED+E+STARSHLNYGN+SPDSSSSS YSSKPRKN SFNPVHK
Sbjct: 126 IDALLSLENENHEGLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSFNPVHK 185

Query: 244 SSSSGSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVG 303
           SSSSGSSC+SDMKQLK+KKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVG
Sbjct: 186 SSSSGSSCSSDMKQLKLKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVG 245

Query: 304 GLEN 307
           GLEN
Sbjct: 246 GLEN 249

[Close]

BLAST of Lsi01G001670 vs. NCBI nr
Match: XP_004134628.1 (transcription factor bHLH144 [Cucumis sativus] >XP_004134630.1 transcription factor bHLH144 [Cucumis sativus] >XP_031743511.1 transcription factor bHLH144 [Cucumis sativus] >KGN49377.1 hypothetical protein Csa_003727 [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 7.9e-123
Identity = 228/244 (93.44%), Postives = 238/244 (97.54%), Query Frame = 0


Query: 64  SDLNFYLKKAMRPTANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 123
           SDLNFYLKKA  PTA QGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF
Sbjct: 6   SDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNF 65

Query: 124 IIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDEHYEDREISSPLMEDLDD 183
           IIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNFCVND+H+EDREISSPLMEDLDD
Sbjct: 66  IIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLMEDLDD 125

Query: 184 IDALLSLEDEDHEDLDGSEDEEISTARSHLNYGNRSPDSSSSS-YSSKPRKNQSFNPVHK 243
           IDALLSLE+E+HEDLDGSED+E+STARSHLNYGN+SPDSSSSS YSSKPRKN SFNPVHK
Sbjct: 126 IDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSFNPVHK 185

Query: 244 SSSSGSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVG 303
           SSSSGSSCNSD+KQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDEVQKLGVG
Sbjct: 186 SSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKLGVG 245

Query: 304 GLEN 307
           GLEN
Sbjct: 246 GLEN 249

[Close]

BLAST of Lsi01G001670 vs. TAIR 10
Match: AT1G29950.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 7.0e-37
Identity = 106/239 (44.35%), Postives = 145/239 (60.67%), Query Frame = 0


Query: 81  GDDN-HMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNFIIFDHTDNRSQIMFHP 140
           GD N H      S++ ++ PP  K   P++ VE QPS VCP+NF+IFD T +RSQ+M+HP
Sbjct: 14  GDRNMHNPYASGSSYDALFPPCAKL--PYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHP 73

Query: 141 AIANKL-SGPTANMCSKYIQKNFC----VNDEHYEDREISSPLMEDLDDIDALLSLED-- 200
            + +KL + P+ N  +   Q  +      N  +YE +E+SS   ED ++IDALLS ++  
Sbjct: 74  ELTHKLMNTPSLNNLASTFQNEYVGGSYGNYGNYE-QEVSSSYQEDPNEIDALLSADEDY 133

Query: 201 EDHEDLDGSED----EEISTAR-SHLNYGNRSPDSSSSSYSSKPRKNQSFNPVHKSSSSG 260
           E+++D +G ED    EE+STAR S  +YGN + +S  SSY      N +      S S+ 
Sbjct: 134 EENDDNEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSSYGYNNNNNNNSRKQSLSGSAS 193

Query: 261 SSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVGGLEN 307
           SS N    + K+KKM+  LR I+PGG QM T  VLDEAV+YLKSLK E QKLGVG   N
Sbjct: 194 SSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKIEAQKLGVGHFSN 249

[Close]

BLAST of Lsi01G001670 vs. TAIR 10
Match: AT1G29950.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 7.0e-37
Identity = 106/239 (44.35%), Postives = 145/239 (60.67%), Query Frame = 0


Query: 81  GDDN-HMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNFIIFDHTDNRSQIMFHP 140
           GD N H      S++ ++ PP  K   P++ VE QPS VCP+NF+IFD T +RSQ+M+HP
Sbjct: 14  GDRNMHNPYASGSSYDALFPPCAKL--PYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHP 73

Query: 141 AIANKL-SGPTANMCSKYIQKNFC----VNDEHYEDREISSPLMEDLDDIDALLSLED-- 200
            + +KL + P+ N  +   Q  +      N  +YE +E+SS   ED ++IDALLS ++  
Sbjct: 74  ELTHKLMNTPSLNNLASTFQNEYVGGSYGNYGNYE-QEVSSSYQEDPNEIDALLSADEDY 133

Query: 201 EDHEDLDGSED----EEISTAR-SHLNYGNRSPDSSSSSYSSKPRKNQSFNPVHKSSSSG 260
           E+++D +G ED    EE+STAR S  +YGN + +S  SSY      N +      S S+ 
Sbjct: 134 EENDDNEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSSYGYNNNNNNNSRKQSLSGSAS 193

Query: 261 SSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQKLGVGGLEN 307
           SS N    + K+KKM+  LR I+PGG QM T  VLDEAV+YLKSLK E QKLGVG   N
Sbjct: 194 SSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKIEAQKLGVGHFSN 249

[Close]

BLAST of Lsi01G001670 vs. TAIR 10
Match: AT1G29951.1 (conserved peptide upstream open reading frame 35 )

HSP 1 Score: 55.8 bits (133), Expect = 6.9e-08
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 8  KRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT 49
          K NR+++EIG   M+   IA YQ +QVCQAEYFRQLLKPVT
Sbjct: 8  KGNRSLKEIGTFMMTTCFIANYQSVQVCQAEYFRQLLKPVT 48

The following BLAST results are available for this feature:

BLAST of Lsi01G001670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ASX9	9.9e-36	44.35	Transcription factor bHLH144 OS=Arabidopsis thaliana OX=3702 GN=BHLH144 PE=1 SV=...	[more]

BLAST of Lsi01G001670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBJ4	3.8e-139	85.99	Transcription factor bHLH144 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3AYV1	1.7e-123	94.26	transcription factor bHLH144 OS=Cucumis melo OX=3656 GN=LOC103484384 PE=4 SV=1	[more]
A0A0A0KLX4	3.8e-123	93.44	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522710 PE=4 S...	[more]
A0A6J1EDR8	3.7e-118	92.65	transcription factor bHLH144-like OS=Cucurbita moschata OX=3662 GN=LOC111433273 ...	[more]
A0A6J1INB7	5.3e-117	92.65	transcription factor bHLH144-like OS=Cucurbita maxima OX=3661 GN=LOC111477984 PE...	[more]

BLAST of Lsi01G001670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052558.1	7.8e-139	85.99	transcription factor bHLH144 [Cucumis melo var. makuwa] >TYK13268.1 transcriptio...	[more]
KAG7034698.1	6.9e-135	85.02	Transcription factor bHLH [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038881999.1	2.0e-126	95.88	transcription factor bHLH144 [Benincasa hispida]	[more]
XP_008439654.1	3.5e-123	94.26	PREDICTED: transcription factor bHLH144 [Cucumis melo] >XP_008439656.1 PREDICTED...	[more]
XP_004134628.1	7.9e-123	93.44	transcription factor bHLH144 [Cucumis sativus] >XP_004134630.1 transcription fac...	[more]

BLAST of Lsi01G001670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29950.1	7.0e-37	44.35	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G29950.2	7.0e-37	44.35	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G29951.1	6.9e-08	65.85	conserved peptide upstream open reading frame 35	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..253
None	No IPR available	PANTHER	PTHR36066:SF11	TRANSCRIPTION FACTOR BHLH144	coord: 65..304
IPR037546	Transcription factor SAC51-like	PANTHER	PTHR36066	TRANSCRIPTION FACTOR BHLH145	coord: 65..304
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 243..292 score: 8.733683
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 258..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001670.1	Lsi01G001670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity