Lsi01G001610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	high mobility group B protein 14
Location	chr01: 1617871 .. 1618450 (+)
RNA-Seq Expression	Lsi01G001610
Synteny	Lsi01G001610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAGATGTCTAAACATACCTAAAAATAATTAATAATAATTTAAAGAAGAAAAGAAAGAAAAAAAAACCGGTCCAAACTCGGCAACACCGAGTCAGGCCCGAGCGTCGCCAATGGAAGACCAAGGGGGAGAACAACGGCGCAGGGCAATGGCGAAAGCGAAAAAGCCCCAAAAATCACCTCCAGCTTCTGCGCACGAATCTTCCGAAACGTTTGAAGAAGCGTCTCAAGAGTATGTTGTTTGAAGAAACGTTTATTCTGTTACTGAAAACGGTTATTGTTAAAATGACTACCAAGGATCCATAATTTGTTTTCCCCCTCTTTCCGAGTATGTTGCTCATGACGAATTTTGTGGAAACCTCAGGGATACGGGATTATGTGTAAAAAGAAGCGAAGAGATGAAAAGGGCAGCAAAAGCTAGCAGATTTAACACGGATAATAAGAGAATGAAGACAACTAAGAAGCCAAAATCAAAGCAGAAGAAGAAAAATGATAAATTTGATGTCAATAAGCCAAAGAAACCACCTACTGCTTTCTTTTACTTCTTGTATGATCCCTTCCCTTACTCTCATCTCAATTAA

mRNA sequence

TTTCAGATGTCTAAACATACCTAAAAATAATTAATAATAATTTAAAGAAGAAAAGAAAGAAAAAAAAACCGGTCCAAACTCGGCAACACCGAGTCAGGCCCGAGCGTCGCCAATGGAAGACCAAGGGGGAGAACAACGGCGCAGGGCAATGGCGAAAGCGAAAAAGCCCCAAAAATCACCTCCAGCTTCTGCGCACGAATCTTCCGAAACGTTTGAAGAAGCGTCTCAAGAGGATACGGGATTATGTGTAAAAAGAAGCGAAGAGATGAAAAGGGCAGCAAAAGCTAGCAGATTTAACACGGATAATAAGAGAATGAAGACAACTAAGAAGCCAAAATCAAAGCAGAAGAAGAAAAATGATAAATTTGATGTCAATAAGCCAAAGAAACCACCTACTGCTTTCTTTTACTTCTTGTATGATCCCTTCCCTTACTCTCATCTCAATTAA

Coding sequence (CDS)

ATGGAAGACCAAGGGGGAGAACAACGGCGCAGGGCAATGGCGAAAGCGAAAAAGCCCCAAAAATCACCTCCAGCTTCTGCGCACGAATCTTCCGAAACGTTTGAAGAAGCGTCTCAAGAGGATACGGGATTATGTGTAAAAAGAAGCGAAGAGATGAAAAGGGCAGCAAAAGCTAGCAGATTTAACACGGATAATAAGAGAATGAAGACAACTAAGAAGCCAAAATCAAAGCAGAAGAAGAAAAATGATAAATTTGATGTCAATAAGCCAAAGAAACCACCTACTGCTTTCTTTTACTTCTTGTATGATCCCTTCCCTTACTCTCATCTCAATTAA

Protein sequence

MEDQGGEQRRRAMAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYDPFPYSHLN

Homology

[Close]

BLAST of Lsi01G001610 vs. ExPASy TrEMBL
Match: A0A6J1EJV4 (high mobility group B protein 14 OS=Cucurbita moschata OX=3662 GN=LOC111433268 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.7e-28
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 13  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTK 72
           MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AK  RFN   K  KT K
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60

Query: 73  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           +PKS QKKKNDKFDVNKPKKPPTAFFYFL D
Sbjct: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDD 91

[Close]

BLAST of Lsi01G001610 vs. ExPASy TrEMBL
Match: A0A6J1IKU3 (high mobility group B protein 14 OS=Cucurbita maxima OX=3661 GN=LOC111478363 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.7e-28
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 13  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTK 72
           MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AK  RFN   K  KT K
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60

Query: 73  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           +PKS QKKKNDKFDVNKPKKPPTAFFYFL D
Sbjct: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDD 91

[Close]

BLAST of Lsi01G001610 vs. ExPASy TrEMBL
Match: A0A1S3AZW3 (high mobility group B protein 14 OS=Cucumis melo OX=3656 GN=LOC103484380 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 73/91 (80.22%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 13  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTK 72
           MAKAK  QKSP ASAH+SS    EAS E TGL VKR +EMK AAKASRFNTDNKR KT K
Sbjct: 1   MAKAKNLQKSPSASAHDSS----EASSEVTGLRVKRRKEMKSAAKASRFNTDNKRTKTIK 60

Query: 73  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           KPKSKQKKKND+FDVNKPKKPPTAFFYFL D
Sbjct: 61  KPKSKQKKKNDRFDVNKPKKPPTAFFYFLDD 87

[Close]

BLAST of Lsi01G001610 vs. ExPASy TrEMBL
Match: A0A0A0KKL8 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522770 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.2e-22
Identity = 72/91 (79.12%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 13  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTK 72
           MAKAK PQKS  ASA +SS    EAS E+TGL VKRSE MK AAKASRFNTD KR KT K
Sbjct: 1   MAKAKNPQKSSSASARDSS----EASSENTGLRVKRSENMKSAAKASRFNTD-KRAKTIK 60

Query: 73  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           KP SKQKKKNDKFDVNKPKKPPTAFFYFL D
Sbjct: 61  KPNSKQKKKNDKFDVNKPKKPPTAFFYFLDD 86

[Close]

BLAST of Lsi01G001610 vs. ExPASy TrEMBL
Match: A0A6J1D022 (high mobility group B protein 14 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015820 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.1e-11
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 52  MKRAAKASRFNTDNKRMKTTKKPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           MKR+A+ASRFN+D KR KT K+PKSK+KKKNDKFD NKPKKPPTAFFYFL D
Sbjct: 1   MKRSARASRFNSD-KRAKTNKEPKSKEKKKNDKFDANKPKKPPTAFFYFLDD 51

[Close]

BLAST of Lsi01G001610 vs. NCBI nr
Match: XP_038881050.1 (high mobility group B protein 14 isoform X2 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-33
Identity = 84/91 (92.31%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 13  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTK 72
           MAKAKKPQKSP ASAH+SSE FEEAS EDTGLCVKRSEEMKRAAKASRFNTDNKR KT K
Sbjct: 1   MAKAKKPQKSPSASAHDSSEAFEEASPEDTGLCVKRSEEMKRAAKASRFNTDNKRTKTIK 60

Query: 73  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           KPKSKQKKKNDKFDVNKPKKPPTAFFYFL D
Sbjct: 61  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLDD 91

[Close]

BLAST of Lsi01G001610 vs. NCBI nr
Match: XP_038881049.1 (high mobility group B protein 14 isoform X1 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-33
Identity = 84/91 (92.31%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 13  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTK 72
           MAKAKKPQKSP ASAH+SSE FEEAS EDTGLCVKRSEEMKRAAKASRFNTDNKR KT K
Sbjct: 1   MAKAKKPQKSPSASAHDSSEAFEEASPEDTGLCVKRSEEMKRAAKASRFNTDNKRTKTIK 60

Query: 73  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           KPKSKQKKKNDKFDVNKPKKPPTAFFYFL D
Sbjct: 61  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLDD 91

[Close]

BLAST of Lsi01G001610 vs. NCBI nr
Match: XP_022926030.1 (high mobility group B protein 14 [Cucurbita moschata] >XP_022926031.1 high mobility group B protein 14 [Cucurbita moschata] >KAG7034701.1 High mobility group B protein 14 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 3.5e-28
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 13  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTK 72
           MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AK  RFN   K  KT K
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60

Query: 73  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           +PKS QKKKNDKFDVNKPKKPPTAFFYFL D
Sbjct: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDD 91

[Close]

BLAST of Lsi01G001610 vs. NCBI nr
Match: XP_022978337.1 (high mobility group B protein 14 [Cucurbita maxima])

HSP 1 Score: 135.2 bits (339), Expect = 3.5e-28
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 13  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTK 72
           MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AK  RFN   K  KT K
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60

Query: 73  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           +PKS QKKKNDKFDVNKPKKPPTAFFYFL D
Sbjct: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDD 91

[Close]

BLAST of Lsi01G001610 vs. NCBI nr
Match: XP_023544425.1 (high mobility group B protein 14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 4.5e-28
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 13  MAKAKKPQKSPPASAHESSETFEEASQEDTGLCVKRSEEMKRAAKASRFNTDNKRMKTTK 72
           MAKAKKPQKSP  +AH+SSE FEEASQEDTGLCVKRSEEMKR+AKA RFN+  K  KT K
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKARRFNSTEKSTKTNK 60

Query: 73  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLYD 104
           +PKS QKKKNDK DVNKPKKPPTAFFYFL D
Sbjct: 61  RPKSNQKKKNDKIDVNKPKKPPTAFFYFLDD 91

The following BLAST results are available for this feature:

BLAST of Lsi01G001610 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G001610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJV4	1.7e-28	81.32	high mobility group B protein 14 OS=Cucurbita moschata OX=3662 GN=LOC111433268 P...	[more]
A0A6J1IKU3	1.7e-28	81.32	high mobility group B protein 14 OS=Cucurbita maxima OX=3661 GN=LOC111478363 PE=...	[more]
A0A1S3AZW3	5.6e-24	80.22	high mobility group B protein 14 OS=Cucumis melo OX=3656 GN=LOC103484380 PE=4 SV...	[more]
A0A0A0KKL8	5.2e-22	79.12	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522770 PE=...	[more]
A0A6J1D022	7.1e-11	80.77	high mobility group B protein 14 isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Lsi01G001610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881050.1	2.7e-33	92.31	high mobility group B protein 14 isoform X2 [Benincasa hispida]	[more]
XP_038881049.1	2.7e-33	92.31	high mobility group B protein 14 isoform X1 [Benincasa hispida]	[more]
XP_022926030.1	3.5e-28	81.32	high mobility group B protein 14 [Cucurbita moschata] >XP_022926031.1 high mobil...	[more]
XP_022978337.1	3.5e-28	81.32	high mobility group B protein 14 [Cucurbita maxima]	[more]
XP_023544425.1	4.5e-28	81.32	high mobility group B protein 14 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G001610 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..95
None	No IPR available	PANTHER	PTHR47658	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 14..103
None	No IPR available	PANTHER	PTHR47658:SF4	HIGH MOBILITY GROUP B PROTEIN 14	coord: 14..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001610.1	Lsi01G001610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding