Lsi01G001530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	prefoldin 6
Location	chr01: 1560854 .. 1562090 (-)
RNA-Seq Expression	Lsi01G001530
Synteny	Lsi01G001530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTCCTTCACCTCTTTCAAGGAGCTACAACAAAAATCTCTTGATGATAGGCAGAGATCTCAGAAAGTTCCAGAAAGGCAAGCATCGTCACTTTCAATTCTCCTCTCTTCCGATTTTGCCTTTTCAATTTGCACTCCTGTAATCTCATTTTCATCCCTAAAATTCCATGATTCTACGATTTTACGCATTTTCTTGTGCAATTTTTTTGGTTTGATGATATGATGCATGATTCGAAATTTCGATTTGATGAATGAATGATCTGCTAGACCTTGCGAAGAATTACCAAGAATGAGTGAAGTGTGATACAATGCTGCGTGAAAGCGAGTTTGCTCTCAAGGTTAACATTTCTTCACTTAATTAAAGCCTTACCTCTACTTCTTGCTTTGTTTATGAGAAATTAATTGTGAACATGAATCTGTCTGAAGTTCTCTGCATTTTTTGTCAATCTTTTCGTGTTCGACTCCGCTTCATTTCTACGTGTTATTAGAGTCGTTTCTGCGATTCTTTTAGTCACCGTTGAATTGATAATACGTGGCAAAATCAATTAAATTCTGTTTCGAAACACAAAATATCGTTGTGTATACTGTATTCAACCGATCGAAGCGAGTGAATTTTTTTCGGTTATTTGCTTCAGTTTATATCAAGAAGGAAACTGTTGCGATCGTCAAGTCTGAGACCAATTGTTATTCTTGCAATCTTTTTTGGCGTAATGCAGGAGTTGGATTTGCTGAAGGAGGATGCAACTGTGTACAAATTAGTCGGTCCTATTCTTGTGAAGCAAGATCTAGCAGAGCCAAGCGGGTAATGTTCAGAAGAGAATTGGTTACCTCACCGATGAATTGAATGTTTCTGTCTCAATTCTTCGTCGATTTACAATGTGCTAACATTCTTTAGCTATGAAGTTGCTTGGTTCCCTTACTAACTCTGGCCTAATGCGAAGATTCATTTACCTAATACGGCCAAAAGCTACTTTGTGTCGATCTGCTGTACACTAGCCCAAGTAATGTACAAGAAAACTGTTTCATGATATTTGCAGCAAACCATCCCCTAGGATTATTCTGACGAGAGGTCATTTTGGATTTTGTTAAGAGGAGGGAGTGGCGTTGCTTCAAAATTTAGGAAGCACGGACATGGACACAGGCATGCCACACGACACCGACACTGACACAATGCACACCAATTTTTAAAATTGTAGGACATGGCACATTGGAAACACTTTTTTTTAATAGTATAT

mRNA sequence

ATGTGCTCCTTCACCTCTTTCAAGGAGCTACAACAAAAATCTCTTGATGATAGGCAGAGATCTCAGAAAGTTCCAGAAAGGCAAGCATCGTCACTTTCAATTCTCCTCTCTTCCGATTTTGCCTTTTCAATTTGCACTCCTGAGTTGGATTTGCTGAAGGAGGATGCAACTGTGTACAAATTAGTCGGTCCTATTCTTGTGAAGCAAGATCTAGCAGAGCCAAGCGGGTAATGTTCAGAAGAGAATTGGTTACCTCACCGATGAATTGAATGTTTCTGTCTCAATTCTTCGTCGATTTACAATGTGCTAACATTCTTTAGCTATGAAGTTGCTTGGTTCCCTTACTAACTCTGGCCTAATGCGAAGATTCATTTACCTAATACGGCCAAAAGCTACTTTGTGTCGATCTGCTGTACACTAGCCCAAGTAATGTACAAGAAAACTGTTTCATGATATTTGCAGCAAACCATCCCCTAGGATTATTCTGACGAGAGGTCATTTTGGATTTTGTTAAGAGGAGGGAGTGGCGTTGCTTCAAAATTTAGGAAGCACGGACATGGACACAGGCATGCCACACGACACCGACACTGACACAATGCACACCAATTTTTAAAATTGTAGGACATGGCACATTGGAAACACTTTTTTTTAATAGTATAT

Coding sequence (CDS)

ATGTGCTCCTTCACCTCTTTCAAGGAGCTACAACAAAAATCTCTTGATGATAGGCAGAGATCTCAGAAAGTTCCAGAAAGGCAAGCATCGTCACTTTCAATTCTCCTCTCTTCCGATTTTGCCTTTTCAATTTGCACTCCTGAGTTGGATTTGCTGAAGGAGGATGCAACTGTGTACAAATTAGTCGGTCCTATTCTTGTGAAGCAAGATCTAGCAGAGCCAAGCGGGTAA

Protein sequence

MCSFTSFKELQQKSLDDRQRSQKVPERQASSLSILLSSDFAFSICTPELDLLKEDATVYKLVGPILVKQDLAEPSG

Homology

[Close]

BLAST of Lsi01G001530 vs. TAIR 10
Match: AT1G29990.1 (prefoldin 6 )

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 48 ELDLLKEDATVYKLVGPILVKQDLAE 74
          ELDLL+EDA VYKL+GP+LVKQDLAE
Sbjct: 50 ELDLLEEDANVYKLIGPVLVKQDLAE 75

The following BLAST results are available for this feature:

BLAST of Lsi01G001530 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G001530 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G001530 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G001530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29990.1	2.1e-06	84.62	prefoldin 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 3..74 e-value: 1.9E-8 score: 36.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 11..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001530.1	Lsi01G001530.1	mRNA