Lsi01G001410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Outer envelope membrane protein 7
Location	chr01: 1472159 .. 1472608 (+)
RNA-Seq Expression	Lsi01G001410
Synteny	Lsi01G001410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCAATAACGACGGCGGTGATAGCAATCGGAGCGGTGGTTCTAGGATGGATCACCATCGAAATAGCTTGCAAACCTTGCCTGGAAAAAGGTCGCGAGGCCATAGATCGCTCTCTCAATCCCGATTACGATCCTGACGATGAAATCTCCGATATTCGTGCTCCTCTAAATCCCAACCCAGATTTCACTCCAGATCTTGATCGTACTCATCCATCTTCCACCACTTCCGATGCCATCAAGGCCGTTTGATTTCAATTCCTCCGCCTAATTTCACCATCTTCTTTTCTCGTACTTAACGGATAATCGCATTTTCTTGTTGAAGAAAAAGGTTGTTTGTTCTCGTCAATCGTATTCCAGATTGTAGAATCTGTGGTTCGTGTTGAATATTTCGCTTTGGAATTGTCTACTGATCGCCGATTCAAGAATGGTCAACGGATTGCAATGTAA

mRNA sequence

ATGGGGGCAATAACGACGGCGGTGATAGCAATCGGAGCGGTGGTTCTAGGATGGATCACCATCGAAATAGCTTGCAAACCTTGCCTGGAAAAAGGTCGCGAGGCCATAGATCGCTCTCTCAATCCCGATTACGATCCTGACGATGAAATCTCCGATATTCGTGCTCCTCTAAATCCCAACCCAGATTTCACTCCAGATCTTGATCGTACTCATCCATCTTCCACCACTTCCGATGCCATCAAGGCCATTGTAGAATCTGTGGTTCGTGTTGAATATTTCGCTTTGGAATTGTCTACTGATCGCCGATTCAAGAATGGTCAACGGATTGCAATGTAA

Coding sequence (CDS)

ATGGGGGCAATAACGACGGCGGTGATAGCAATCGGAGCGGTGGTTCTAGGATGGATCACCATCGAAATAGCTTGCAAACCTTGCCTGGAAAAAGGTCGCGAGGCCATAGATCGCTCTCTCAATCCCGATTACGATCCTGACGATGAAATCTCCGATATTCGTGCTCCTCTAAATCCCAACCCAGATTTCACTCCAGATCTTGATCGTACTCATCCATCTTCCACCACTTCCGATGCCATCAAGGCCATTGTAGAATCTGTGGTTCGTGTTGAATATTTCGCTTTGGAATTGTCTACTGATCGCCGATTCAAGAATGGTCAACGGATTGCAATGTAA

Protein sequence

MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPNPDFTPDLDRTHPSSTTSDAIKAIVESVVRVEYFALELSTDRRFKNGQRIAM

Homology

[Close]

BLAST of Lsi01G001410 vs. ExPASy TrEMBL
Match: A0A5D3CQ30 (Outer envelope membrane protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009070 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.5e-32
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITTAVIAIGAVV GWITIEIACKPCLEKGREAIDRSLNPDYDPDDE+SDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEVSDIRAPLNPN 60

Query: 61 PDFTPDLDRT---HPSSTTSDAIKAI 84
           +FTPDLD T   HPSSTTS+ IKA+
Sbjct: 61 HNFTPDLDDTNPSHPSSTTSEVIKAV 86

[Close]

BLAST of Lsi01G001410 vs. ExPASy TrEMBL
Match: A0A0A0KLZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523430 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.5e-32
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITTAVIAIGAVV GWITIEIACKPCLEKGREAIDRSLNPD+DPDDE+SDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60

Query: 61 PDFTPDLDRTHP---SSTTSDAIKAI 84
          P+FTPDLD T+P   SSTTS+ IKA+
Sbjct: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 86

[Close]

BLAST of Lsi01G001410 vs. ExPASy TrEMBL
Match: A0A1S3AZV1 (uncharacterized protein LOC103484363 OS=Cucumis melo OX=3656 GN=LOC103484363 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.5e-32
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITTAVIAIGAVV GWITIEIACKPCLEKGREAIDRSLNPDYDPDDE+SDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEVSDIRAPLNPN 60

Query: 61 PDFTPDLDRT---HPSSTTSDAIKAI 84
           +FTPDLD T   HPSSTTS+ IKA+
Sbjct: 61 HNFTPDLDDTNPSHPSSTTSEVIKAV 86

[Close]

BLAST of Lsi01G001410 vs. ExPASy TrEMBL
Match: A0A6J1EGJ5 (uncharacterized protein LOC111433180 OS=Cucurbita moschata OX=3662 GN=LOC111433180 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.8e-30
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITTAVIAIGAV+LGWITIE ACKPCLEKGREAIDRSLNPDYDPDD++SDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVILGWITIETACKPCLEKGREAIDRSLNPDYDPDDDVSDIRAPLNPN 60

Query: 61 PDFTPDLD---RTHPSSTTSDAIKAI 84
           D +PDLD    +HPSSTTS+ +K +
Sbjct: 61 ADLSPDLDGVKASHPSSTTSEVVKGV 86

[Close]

BLAST of Lsi01G001410 vs. ExPASy TrEMBL
Match: A0A6J1IVJ6 (uncharacterized protein LOC111478783 OS=Cucurbita maxima OX=3661 GN=LOC111478783 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 67/86 (77.91%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITT+VIAIGAV+LGWITIE ACKPCLEKGREAIDRSLNPDYDPDD++SDIRAPLNPN
Sbjct: 1  MGAITTSVIAIGAVILGWITIETACKPCLEKGREAIDRSLNPDYDPDDDVSDIRAPLNPN 60

Query: 61 PDFTPDLD---RTHPSSTTSDAIKAI 84
           D +PDLD    + PSSTTS+ +K +
Sbjct: 61 ADLSPDLDGVKASRPSSTTSEVVKGV 86

[Close]

BLAST of Lsi01G001410 vs. NCBI nr
Match: XP_011658293.1 (uncharacterized protein LOC101212042 [Cucumis sativus] >KGN49402.1 hypothetical protein Csa_003125 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-31
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITTAVIAIGAVV GWITIEIACKPCLEKGREAIDRSLNPD+DPDDE+SDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDFDPDDEVSDIRAPLNPN 60

Query: 61 PDFTPDLDRTHP---SSTTSDAIKAI 84
          P+FTPDLD T+P   SSTTS+ IKA+
Sbjct: 61 PNFTPDLDHTNPNHSSSTTSEVIKAV 86

[Close]

BLAST of Lsi01G001410 vs. NCBI nr
Match: XP_008439626.1 (PREDICTED: uncharacterized protein LOC103484363 [Cucumis melo] >KAA0052538.1 outer envelope membrane protein 7 [Cucumis melo var. makuwa] >TYK13288.1 outer envelope membrane protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-31
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITTAVIAIGAVV GWITIEIACKPCLEKGREAIDRSLNPDYDPDDE+SDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVVAGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEVSDIRAPLNPN 60

Query: 61 PDFTPDLDRT---HPSSTTSDAIKAI 84
           +FTPDLD T   HPSSTTS+ IKA+
Sbjct: 61 HNFTPDLDDTNPSHPSSTTSEVIKAV 86

[Close]

BLAST of Lsi01G001410 vs. NCBI nr
Match: XP_023543277.1 (uncharacterized protein LOC111803204 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-29
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITTAVIAIGAV+LGWITIE ACKPCLEKGREAIDRSLNPDYDPDD++SDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVILGWITIETACKPCLEKGREAIDRSLNPDYDPDDDVSDIRAPLNPN 60

Query: 61 PDFTPDLD---RTHPSSTTSDAIKAI 84
           D +PDLD    +HPSSTTS+ +K +
Sbjct: 61 ADLSPDLDVVKASHPSSTTSEVVKGV 86

[Close]

BLAST of Lsi01G001410 vs. NCBI nr
Match: XP_022925903.1 (uncharacterized protein LOC111433180 [Cucurbita moschata] >KAG6581432.1 Outer envelope membrane protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-29
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITTAVIAIGAV+LGWITIE ACKPCLEKGREAIDRSLNPDYDPDD++SDIRAPLNPN
Sbjct: 1  MGAITTAVIAIGAVILGWITIETACKPCLEKGREAIDRSLNPDYDPDDDVSDIRAPLNPN 60

Query: 61 PDFTPDLD---RTHPSSTTSDAIKAI 84
           D +PDLD    +HPSSTTS+ +K +
Sbjct: 61 ADLSPDLDGVKASHPSSTTSEVVKGV 86

[Close]

BLAST of Lsi01G001410 vs. NCBI nr
Match: XP_038882806.1 (uncharacterized protein LOC120073952 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-28
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDEISDIRAPLNPN 60
          MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPD+DPDDEISDI APLNPN
Sbjct: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDHDPDDEISDILAPLNPN 60

Query: 61 PDFTPDLDRTHPSSTTSDAIKAI 84
           D TPDLD  +P+  +S+ IKA+
Sbjct: 61 RDVTPDLDDPNPNQPSSEVIKAV 83

[Close]

BLAST of Lsi01G001410 vs. TAIR 10
Match: AT2G34585.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.1 bits (240), Expect = 9.8e-21
Identity = 55/87 (63.22%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MGAITTAVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDDE----ISDIRAP 60
          M AIT+AVIAI  ++LGWITIE+ACKPCLE GREAIDRSLNPDYDPDD+     SD+RAP
Sbjct: 1  MAAITSAVIAIAGIILGWITIELACKPCLESGREAIDRSLNPDYDPDDQDVDSSSDVRAP 60

Query: 61 LNPNPDFTPDLDRTHPSSTTSDAIKAI 84
          L PN       D + P  TT  AIK++
Sbjct: 61 LIPN----HPPDNSDPDPTT--AIKSV 81

[Close]

BLAST of Lsi01G001410 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 43.9 bits (102), Expect = 9.8e-05
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 7  AVIAIGAVVLGWITIEIACKPCLEKGREAIDRSLNPDYDPDD 49
          A + + A+ LGW+ IEIA KP L+K R +ID+S +P  DPDD
Sbjct: 10 ATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKS-DPTKDPDD 50

The following BLAST results are available for this feature:

BLAST of Lsi01G001410 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G001410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQ30	9.5e-32	87.21	Outer envelope membrane protein 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0KLZ9	9.5e-32	86.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523430 PE=4 SV=1	[more]
A0A1S3AZV1	9.5e-32	87.21	uncharacterized protein LOC103484363 OS=Cucumis melo OX=3656 GN=LOC103484363 PE=...	[more]
A0A6J1EGJ5	6.8e-30	80.23	uncharacterized protein LOC111433180 OS=Cucurbita moschata OX=3662 GN=LOC1114331...	[more]
A0A6J1IVJ6	1.3e-28	77.91	uncharacterized protein LOC111478783 OS=Cucurbita maxima OX=3661 GN=LOC111478783...	[more]

BLAST of Lsi01G001410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658293.1	2.0e-31	86.05	uncharacterized protein LOC101212042 [Cucumis sativus] >KGN49402.1 hypothetical ...	[more]
XP_008439626.1	2.0e-31	87.21	PREDICTED: uncharacterized protein LOC103484363 [Cucumis melo] >KAA0052538.1 out...	[more]
XP_023543277.1	1.4e-29	80.23	uncharacterized protein LOC111803204 [Cucurbita pepo subsp. pepo]	[more]
XP_022925903.1	1.4e-29	80.23	uncharacterized protein LOC111433180 [Cucurbita moschata] >KAG6581432.1 Outer en...	[more]
XP_038882806.1	1.2e-28	83.13	uncharacterized protein LOC120073952 [Benincasa hispida]	[more]

BLAST of Lsi01G001410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34585.1	9.8e-21	63.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G52420.1	9.8e-05	52.38	outer envelope membrane protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..75
None	No IPR available	PANTHER	PTHR33982:SF1	OS07G0154300 PROTEIN	coord: 1..78
IPR038944	Outer envelope membrane protein 7-like	PANTHER	PTHR33982	OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATED	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001410.1	Lsi01G001410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane