Lsi01G001380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Tify domain-containing protein
Location	chr01: 1419982 .. 1421516 (-)
RNA-Seq Expression	Lsi01G001380
Synteny	Lsi01G001380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTTTTTCACAAAATCCACTTTAAAAATCAACCCAATATTTTTCTTTCTCTCTCCTTATAACTTCAAATTATATAAACAGCAACAAACTTACTTCTCCAACCAATTCCATTTCATTTCTCTCATTATTATATATTTATTATTATTTCAATTTCCCATGAAAATTAACCCCTCCTCTCTCAGAATGAGGCGAAACTGCAACTTGGAACTTCGTCTTTCTCCCATCTCCACCGCTGCCGCCGCTGTCTCCGACCACTCCTCCGCCGCCGCTGACGGCAGCCCTCAAAGCCAACAACTCACCATCTTCTACAACGGCCGGATCTGCGTCTGTGACGTTACAGAGCTTCAGGTACCAATAAAAACCAAATTTCCTTCTTCTCTTTTTTCCACGTGGCTACCAGTGATTGGATTGGCTGGCTGTGAGCTGTGTCTGTGACCGCGTAGTACTTTTATTTTATTTTAGTTTAAATTTGACTAAACCCGTCGAGCGGACCATGAAATATTCATGCGACACTGCGCGTGGGTTGGTTTCCGTCTTTAAAGCCGACACCGCGTTTTGGCTTTGTTGACATGTCGTTTTCATCTCACCAAAGTTCGCTCTACCCACGTTTTTTTTATGTCTTCTATTTATTAATTTTTTAATTTTTTAATTCATCTACAGGTTATTCTTTAGTTAATAATTATTTAGTTTCAAATATCATAGGTTAAAAAAAAAAAAAAAGTTCGGGATTATTTTGCTAATAATTAGTCTTATTTTAAGCCCATAATTTCGTAAATGATCGTCTTATTGTATGCTGCATTCTTACGTGCATTATTTATAAATATCTTTGTTATAATAATTAATAAGAAATGAATGTCTCTCATAGGAATAAAAAAGAGAACTATTAAGAGGATTATTGATTTGTCTTTTGAAAGAATGAAAACTTTAAAGGTTGTTTGATAATATATATATTTATGTGCGAGTAATTATTTTGTTATGGATGAATATTGTAGGCAAGAGCAATTTTAAAGTTGGCAACTAGAGAAATGGAGGAGAAGGCTCTGAATGAAGAACCATCGCCGATACTACAACAGTCTCCGCCACCACGAACCCCGATCGCCCCGGGGCTCTCGATGAAGAAATCGCTGCAAAGATTTCTGCAGAAGAGGAAGCATAGAGTTCAAGCAACTTCTCCATACAACCACTGAAAAATACCAAAAATGGAGACACGTTAAACCAAAATTTTAAAGATAATTTCAAGCCATTTGGGGCTTAGATCAAGTTCTTAATTATTTTGGTCCTTTGTTTGTTCCATATATATATATATATGATGTAAGAGGAAGAACACCTAGAGGCTTTTGTAAATTACCTATCTATTTGTTTTTGTTTAATTCTTCAGCTTCAAAAATTAGCCTTTTTTTTCACTTTAATTCATTTGTTTTTAGATACCATATACAAACTCATTCATCTCAATTTTTCATTTTATACCACAAATGTGCCTTTTTTTACCTTCTTTTATATTACTACTCACTTATTTGATTGGTTGGATTTGAA

mRNA sequence

TTTTGTTTTTCACAAAATCCACTTTAAAAATCAACCCAATATTTTTCTTTCTCTCTCCTTATAACTTCAAATTATATAAACAGCAACAAACTTACTTCTCCAACCAATTCCATTTCATTTCTCTCATTATTATATATTTATTATTATTTCAATTTCCCATGAAAATTAACCCCTCCTCTCTCAGAATGAGGCGAAACTGCAACTTGGAACTTCGTCTTTCTCCCATCTCCACCGCTGCCGCCGCTGTCTCCGACCACTCCTCCGCCGCCGCTGACGGCAGCCCTCAAAGCCAACAACTCACCATCTTCTACAACGGCCGGATCTGCGTCTGTGACGTTACAGAGCTTCAGGCAAGAGCAATTTTAAAGTTGGCAACTAGAGAAATGGAGGAGAAGGCTCTGAATGAAGAACCATCGCCGATACTACAACAGTCTCCGCCACCACGAACCCCGATCGCCCCGGGGCTCTCGATGAAGAAATCGCTGCAAAGATTTCTGCAGAAGAGGAAGCATAGAGTTCAAGCAACTTCTCCATACAACCACTGAAAAATACCAAAAATGGAGACACGTTAAACCAAAATTTTAAAGATAATTTCAAGCCATTTGGGGCTTAGATCAAGTTCTTAATTATTTTGGTCCTTTGTTTGTTCCATATATATATATATATGATGTAAGAGGAAGAACACCTAGAGGCTTTTGTAAATTACCTATCTATTTGTTTTTGTTTAATTCTTCAGCTTCAAAAATTAGCCTTTTTTTTCACTTTAATTCATTTGTTTTTAGATACCATATACAAACTCATTCATCTCAATTTTTCATTTTATACCACAAATGTGCCTTTTTTTACCTTCTTTTATATTACTACTCACTTATTTGATTGGTTGGATTTGAA

Coding sequence (CDS)

ATGAAAATTAACCCCTCCTCTCTCAGAATGAGGCGAAACTGCAACTTGGAACTTCGTCTTTCTCCCATCTCCACCGCTGCCGCCGCTGTCTCCGACCACTCCTCCGCCGCCGCTGACGGCAGCCCTCAAAGCCAACAACTCACCATCTTCTACAACGGCCGGATCTGCGTCTGTGACGTTACAGAGCTTCAGGCAAGAGCAATTTTAAAGTTGGCAACTAGAGAAATGGAGGAGAAGGCTCTGAATGAAGAACCATCGCCGATACTACAACAGTCTCCGCCACCACGAACCCCGATCGCCCCGGGGCTCTCGATGAAGAAATCGCTGCAAAGATTTCTGCAGAAGAGGAAGCATAGAGTTCAAGCAACTTCTCCATACAACCACTGA

Protein sequence

MKINPSSLRMRRNCNLELRLSPISTAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDVTELQARAILKLATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHRVQATSPYNH

Homology

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BLAST of Lsi01G001380 vs. ExPASy Swiss-Prot
Match: Q8LBM2 (Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-17
Identity = 56/128 (43.75%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 8   LRMRRNCNLELRLSPI------STAAAAVSDHSSAAADGSPQSQQLTIFYNGRICV-CDV 67
           +++++NC+LELRL P       S   + V   SS     + +SQ++TIFYNG++C   DV
Sbjct: 1   MKLQQNCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDV 60

Query: 68  TELQARAILKLATREMEEKALNEEPSPILQQSPPPRTPIA-PGLSMKKSLQRFLQKRKHR 127
           T LQAR+I+ +A+REM+ K+ +    P  + +      +  P  SMKKSLQ FLQKRK R
Sbjct: 61  THLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIR 120

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BLAST of Lsi01G001380 vs. ExPASy Swiss-Prot
Match: O64687 (Protein TIFY 5B OS=Arabidopsis thaliana OX=3702 GN=TIFY 5B PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-14
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 3   INPSSLRMRRNCNLELRL--SPISTAAAAVSDHSSAAADGSP--QSQQLTIFYNGRICV- 62
           +N   + M+  C+LELRL  S   +   +  D SS++    P  +SQ LTIFYNG +CV 
Sbjct: 13  LNFKEMEMQTKCDLELRLLTSSYDSDFHSSLDESSSSEISQPKQESQILTIFYNGHMCVS 72

Query: 63  CDVTELQARAILKLATREMEEKALNEEPSPILQQSPPPRTP------IAPGLSMKKSLQR 122
            D+T L+A AIL LA+R++EEK+L+   S     S PP  P           SMK+SL  
Sbjct: 73  SDLTHLEANAILSLASRDVEEKSLSLRSS---DGSDPPTIPNNSTRFHYQKASMKRSLHS 132

Query: 123 FLQKRKHRVQATSPYN 128
           FLQKR  R+QATSPY+
Sbjct: 133 FLQKRSLRIQATSPYH 145

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BLAST of Lsi01G001380 vs. ExPASy Swiss-Prot
Match: F4J078 (Protein JAZ13 OS=Arabidopsis thaliana OX=3702 GN=JAZ13 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-08
Identity = 39/109 (35.78%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 12  RNCNLELRLSPI-STAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDVTELQARAILK 71
           + C+L+L LSP+ ST  +   D +      + +S+++  FY+GR+   D+ E+Q RAI++
Sbjct: 2   KGCSLDLHLSPMASTLQSCHQDSTVNDRSSTIRSKEINAFYSGRLSEYDLVEIQMRAIIE 61

Query: 72  LATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHR 120
           +A+++ E  AL  E  P+  +SP        G S+K+S++RFL+KRK R
Sbjct: 62  MASKDREVTAL--ELVPVRLESP-------LGCSVKRSVKRFLEKRKKR 101

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BLAST of Lsi01G001380 vs. ExPASy Swiss-Prot
Match: A2XSX6 (Protein TIFY 9 OS=Oryza sativa subsp. indica OX=39946 GN=TIFY9 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 0


Query: 19  RLSPISTAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDVTELQARAILKLATREMEE 78
           R  P  + A    +   AAA  +P    +T+FYNG + V DV+  +A AI+++AT   + 
Sbjct: 63  RPPPPPSTAPVPEEMPGAAAAAAP----MTLFYNGSVAVFDVSHDKAEAIMRMATEATKA 122

Query: 79  KALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHRVQATSPY 127
           K L    + +   +  P       L+  KSLQRFL KRK R+ +  PY
Sbjct: 123 KGLARGNAIVGNFAKEP-------LTRTKSLQRFLSKRKERLTSLGPY 159

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BLAST of Lsi01G001380 vs. ExPASy Swiss-Prot
Match: Q7XV97 (Protein TIFY 9 OS=Oryza sativa subsp. japonica OX=39947 GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 22  PISTAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDVTELQARAILKLATREMEEKAL 81
           P  + A    +   AAA  +P    +T+FYNG + V DV+  +A AI+++AT   + K L
Sbjct: 66  PPPSTAPVPEEMPGAAAAAAP----MTLFYNGSVAVFDVSHDKAEAIMRMATEATKAKGL 125

Query: 82  NEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHRVQATSPY 127
               + +   +  P       L+  KSLQRFL KRK R+ +  PY
Sbjct: 126 ARGNAIVGNFAKEP-------LTRTKSLQRFLSKRKERLTSLGPY 159

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BLAST of Lsi01G001380 vs. ExPASy TrEMBL
Match: A0A0A0KI51 (Tify domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523460 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47
Identity = 108/132 (81.82%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 1   MKINPSSLRMRRNCNLELRLSPI---STAAAAVSDHSSAAADGSPQSQQLTIFYNGRICV 60
           M++N +SLRMRRNCNLELRLSP    +   AAVSD  SA AD SPQSQQLTIFYNGRICV
Sbjct: 1   MEVNSTSLRMRRNCNLELRLSPTPNPNPNPAAVSDQPSATADDSPQSQQLTIFYNGRICV 60

Query: 61  CDVTELQARAILKLATREMEEKALNEEPSPILQQ-SPPPRTPIAPGLSMKKSLQRFLQKR 120
           CDVTELQARAILKLATREMEE  L+E PSP+LQQ SPPPRTP  PGLSMKKSLQRFLQKR
Sbjct: 61  CDVTELQARAILKLATREMEENGLSETPSPMLQQSSPPPRTPTTPGLSMKKSLQRFLQKR 120

Query: 121 KHRVQATSPYNH 129
           KHRVQATSPYNH
Sbjct: 121 KHRVQATSPYNH 132

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BLAST of Lsi01G001380 vs. ExPASy TrEMBL
Match: A0A1S3AZ71 (protein TIFY 5A OS=Cucumis melo OX=3656 GN=LOC103484359 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.9e-47
Identity = 107/132 (81.06%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 1   MKINPSSLRMRRNCNLELRLSPISTAAAA----VSDHSSAAADGSPQSQQLTIFYNGRIC 60
           MK+N +SLRMRRN NLELRLSP  ++AAA    VS + S  A GSPQSQQLTIFYNGRIC
Sbjct: 1   MKVNSTSLRMRRNYNLELRLSPTYSSAAAATASVSGNPSPTAYGSPQSQQLTIFYNGRIC 60

Query: 61  VCDVTELQARAILKLATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKR 120
           VCDVTELQARAILKLATREMEE  L+E PSP+LQQSPPPRTP  PGLSMKKSLQRFLQKR
Sbjct: 61  VCDVTELQARAILKLATREMEENGLSETPSPMLQQSPPPRTPTTPGLSMKKSLQRFLQKR 120

Query: 121 KHRVQATSPYNH 129
           KHRVQATSPYNH
Sbjct: 121 KHRVQATSPYNH 132

[Close]

BLAST of Lsi01G001380 vs. ExPASy TrEMBL
Match: A0A6J1KRQ2 (protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111497036 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.0e-45
Identity = 104/123 (84.55%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 6   SSLRMRRNCNLELRLSPISTAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDVTELQA 65
           SSLRMRRNCNLELRLSP +TAAAA    SS+A +GS QSQQLTIFYNGRICVCDVTELQA
Sbjct: 5   SSLRMRRNCNLELRLSPTTTAAAA----SSSADNGSLQSQQLTIFYNGRICVCDVTELQA 64

Query: 66  RAILKLATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHRVQATSP 125
           +AILKLATREMEEK LNE  SP+LQQSP PRTP  PGLSMK+SLQRFLQKRKHRVQATSP
Sbjct: 65  QAILKLATREMEEKDLNEPTSPMLQQSPLPRTPTTPGLSMKRSLQRFLQKRKHRVQATSP 123

Query: 126 YNH 129
           YNH
Sbjct: 125 YNH 123

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BLAST of Lsi01G001380 vs. ExPASy TrEMBL
Match: A0A6J1EFE1 (protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111433812 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 103/123 (83.74%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 6   SSLRMRRNCNLELRLSPISTAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDVTELQA 65
           SSLRMRRNCNLELRLSP +TAAAA    SS+A +GS QSQQLTIFYNGRICVCDVTELQA
Sbjct: 5   SSLRMRRNCNLELRLSPTTTAAAA----SSSADNGSLQSQQLTIFYNGRICVCDVTELQA 64

Query: 66  RAILKLATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHRVQATSP 125
           RAILKLATRE+EEK LNE  SP+LQQSP  RTP  PGLSMK+SLQRFLQKRKHRVQATSP
Sbjct: 65  RAILKLATREIEEKDLNEPTSPMLQQSPVSRTPTTPGLSMKRSLQRFLQKRKHRVQATSP 123

Query: 126 YNH 129
           YNH
Sbjct: 125 YNH 123

[Close]

BLAST of Lsi01G001380 vs. ExPASy TrEMBL
Match: A0A6J1EE47 (protein TIFY 5A OS=Cucurbita moschata OX=3662 GN=LOC111433321 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.8e-43
Identity = 103/128 (80.47%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 1   MKINPSSLRMRRNCNLELRLSPISTAAAAVSDHSSAAA---DGSPQSQQLTIFYNGRICV 60
           MK N SSLRMRRNCNLELRLSP S+A AAVSDHSSAA    + +PQSQQLTIFYNGRICV
Sbjct: 1   MKTN-SSLRMRRNCNLELRLSPTSSAIAAVSDHSSAAVAAPNANPQSQQLTIFYNGRICV 60

Query: 61  CDVTELQARAILKLATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRK 120
           CD TELQA AILKLATREMEEK  NE P PILQQSP P TP  PGLSMK+SLQRFLQKRK
Sbjct: 61  CDATELQAIAILKLATREMEEKGPNETPWPILQQSPAPVTPTTPGLSMKRSLQRFLQKRK 120

Query: 121 HRVQATSP 126
           HR Q TSP
Sbjct: 121 HRAQPTSP 127

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BLAST of Lsi01G001380 vs. NCBI nr
Match: XP_038883218.1 (protein TIFY 5A-like [Benincasa hispida])

HSP 1 Score: 214.2 bits (544), Expect = 6.8e-52
Identity = 114/128 (89.06%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MKINPSSLRMRRNCNLELRLSPISTAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDV 60
           MKIN SSLRMRRNCNLELRLSP S AAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDV
Sbjct: 1   MKINSSSLRMRRNCNLELRLSPTSAAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDV 60

Query: 61  TELQARAILKLATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHRV 120
           TE QARAIL+LATREMEE A NE PS ILQQS PPR    PGLSMKKSLQRFLQKRKHRV
Sbjct: 61  TEFQARAILELATREMEENAQNETPSSILQQSLPPRPTTTPGLSMKKSLQRFLQKRKHRV 120

Query: 121 QATSPYNH 129
           QATSPYNH
Sbjct: 121 QATSPYNH 128

[Close]

BLAST of Lsi01G001380 vs. NCBI nr
Match: XP_004134648.2 (protein TIFY 5A [Cucumis sativus] >KGN49405.1 hypothetical protein Csa_004213 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 2.3e-47
Identity = 108/132 (81.82%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 1   MKINPSSLRMRRNCNLELRLSPI---STAAAAVSDHSSAAADGSPQSQQLTIFYNGRICV 60
           M++N +SLRMRRNCNLELRLSP    +   AAVSD  SA AD SPQSQQLTIFYNGRICV
Sbjct: 1   MEVNSTSLRMRRNCNLELRLSPTPNPNPNPAAVSDQPSATADDSPQSQQLTIFYNGRICV 60

Query: 61  CDVTELQARAILKLATREMEEKALNEEPSPILQQ-SPPPRTPIAPGLSMKKSLQRFLQKR 120
           CDVTELQARAILKLATREMEE  L+E PSP+LQQ SPPPRTP  PGLSMKKSLQRFLQKR
Sbjct: 61  CDVTELQARAILKLATREMEENGLSETPSPMLQQSSPPPRTPTTPGLSMKKSLQRFLQKR 120

Query: 121 KHRVQATSPYNH 129
           KHRVQATSPYNH
Sbjct: 121 KHRVQATSPYNH 132

[Close]

BLAST of Lsi01G001380 vs. NCBI nr
Match: XP_008439622.1 (PREDICTED: protein TIFY 5A [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 107/132 (81.06%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 1   MKINPSSLRMRRNCNLELRLSPISTAAAA----VSDHSSAAADGSPQSQQLTIFYNGRIC 60
           MK+N +SLRMRRN NLELRLSP  ++AAA    VS + S  A GSPQSQQLTIFYNGRIC
Sbjct: 1   MKVNSTSLRMRRNYNLELRLSPTYSSAAAATASVSGNPSPTAYGSPQSQQLTIFYNGRIC 60

Query: 61  VCDVTELQARAILKLATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKR 120
           VCDVTELQARAILKLATREMEE  L+E PSP+LQQSPPPRTP  PGLSMKKSLQRFLQKR
Sbjct: 61  VCDVTELQARAILKLATREMEENGLSETPSPMLQQSPPPRTPTTPGLSMKKSLQRFLQKR 120

Query: 121 KHRVQATSPYNH 129
           KHRVQATSPYNH
Sbjct: 121 KHRVQATSPYNH 132

[Close]

BLAST of Lsi01G001380 vs. NCBI nr
Match: KAG7026459.1 (Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.2 bits (487), Expect = 2.8e-45
Identity = 103/124 (83.06%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 6   SSLRMRRNCNLELRLSPISTAAAAVSDHSSAAAD-GSPQSQQLTIFYNGRICVCDVTELQ 65
           SS+RMRRNCNLELRLSP +TAA A +  +S++AD GS QSQQLTIFYNGRICVCDVTELQ
Sbjct: 5   SSIRMRRNCNLELRLSPTTTAAVAAAAAASSSADNGSLQSQQLTIFYNGRICVCDVTELQ 64

Query: 66  ARAILKLATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHRVQATS 125
           ARAILKLATREMEEK LNE  SP+LQQSP PRTP  PGLSMK+SLQRFLQKRKHRVQATS
Sbjct: 65  ARAILKLATREMEEKDLNEPTSPMLQQSPVPRTPTTPGLSMKRSLQRFLQKRKHRVQATS 124

Query: 126 PYNH 129
           PYNH
Sbjct: 125 PYNH 128

[Close]

BLAST of Lsi01G001380 vs. NCBI nr
Match: KAG6594460.1 (Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.8 bits (486), Expect = 3.6e-45
Identity = 104/124 (83.87%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 6   SSLRMRRNCNLELRLSPISTAAAAVSDHSSAAAD-GSPQSQQLTIFYNGRICVCDVTELQ 65
           SSLRMRRNCNLELRLSP +TAA A +  +S++AD GS QSQQLTIFYNGRICVCDVTELQ
Sbjct: 5   SSLRMRRNCNLELRLSPTTTAAVANAAAASSSADNGSLQSQQLTIFYNGRICVCDVTELQ 64

Query: 66  ARAILKLATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHRVQATS 125
           ARAILKLATREMEEK LNE  SP+LQQSP PRTP  PGLSMK+SLQRFLQKRKHRVQATS
Sbjct: 65  ARAILKLATREMEEKDLNEPTSPMLQQSPVPRTPTTPGLSMKRSLQRFLQKRKHRVQATS 124

Query: 126 PYNH 129
           PYNH
Sbjct: 125 PYNH 128

[Close]

BLAST of Lsi01G001380 vs. TAIR 10
Match: AT1G30135.1 (jasmonate-zim-domain protein 8 )

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-18
Identity = 56/128 (43.75%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 8   LRMRRNCNLELRLSPI------STAAAAVSDHSSAAADGSPQSQQLTIFYNGRICV-CDV 67
           +++++NC+LELRL P       S   + V   SS     + +SQ++TIFYNG++C   DV
Sbjct: 1   MKLQQNCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDV 60

Query: 68  TELQARAILKLATREMEEKALNEEPSPILQQSPPPRTPIA-PGLSMKKSLQRFLQKRKHR 127
           T LQAR+I+ +A+REM+ K+ +    P  + +      +  P  SMKKSLQ FLQKRK R
Sbjct: 61  THLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIR 120

[Close]

BLAST of Lsi01G001380 vs. TAIR 10
Match: AT2G34600.1 (jasmonate-zim-domain protein 7 )

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 3   INPSSLRMRRNCNLELRL--SPISTAAAAVSDHSSAAADGSP--QSQQLTIFYNGRICV- 62
           +N   + M+  C+LELRL  S   +   +  D SS++    P  +SQ LTIFYNG +CV 
Sbjct: 13  LNFKEMEMQTKCDLELRLLTSSYDSDFHSSLDESSSSEISQPKQESQILTIFYNGHMCVS 72

Query: 63  CDVTELQARAILKLATREMEEKALNEEPSPILQQSPPPRTP------IAPGLSMKKSLQR 122
            D+T L+A AIL LA+R++EEK+L+   S     S PP  P           SMK+SL  
Sbjct: 73  SDLTHLEANAILSLASRDVEEKSLSLRSS---DGSDPPTIPNNSTRFHYQKASMKRSLHS 132

Query: 123 FLQKRKHRVQATSPYN 128
           FLQKR  R+QATSPY+
Sbjct: 133 FLQKRSLRIQATSPYH 145

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BLAST of Lsi01G001380 vs. TAIR 10
Match: AT3G22275.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-09
Identity = 39/109 (35.78%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 12  RNCNLELRLSPI-STAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDVTELQARAILK 71
           + C+L+L LSP+ ST  +   D +      + +S+++  FY+GR+   D+ E+Q RAI++
Sbjct: 2   KGCSLDLHLSPMASTLQSCHQDSTVNDRSSTIRSKEINAFYSGRLSEYDLVEIQMRAIIE 61

Query: 72  LATREMEEKALNEEPSPILQQSPPPRTPIAPGLSMKKSLQRFLQKRKHR 120
           +A+++ E  AL  E  P+  +SP        G S+K+S++RFL+KRK R
Sbjct: 62  MASKDREVTAL--ELVPVRLESP-------LGCSVKRSVKRFLEKRKKR 101

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BLAST of Lsi01G001380 vs. TAIR 10
Match: AT5G13220.1 (jasmonate-zim-domain protein 10 )

HSP 1 Score: 49.3 bits (116), Expect = 2.7e-06
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 22  PISTAAAAVSDHSSAAADGSPQSQQLTIFYNGRICVCDVTELQARAILKLATR---EMEE 81
           PIS   A+++  S+    G   +  +TIFYNG + V  V+  +A  I+K+A     + +E
Sbjct: 83  PISPVHASLARSSTELVSG---TVPMTIFYNGSVSVFQVSRNKAGEIMKVANEAASKKDE 142

Query: 82  KALNEEPSPILQQSPPPR---------TPIAPGLSMKKSLQRFLQKRKHRVQATSPY 127
            ++  + S IL  +  P+          PIA     +KSLQRFL+KRK R+ +TSPY
Sbjct: 143 SSMETDLSVILPTTLRPKLFGQNLEGDLPIA----RRKSLQRFLEKRKERLVSTSPY 192

The following BLAST results are available for this feature:

BLAST of Lsi01G001380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBM2	5.6e-17	43.75	Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1	[more]
O64687	2.6e-14	44.12	Protein TIFY 5B OS=Arabidopsis thaliana OX=3702 GN=TIFY 5B PE=1 SV=1	[more]
F4J078	8.2e-08	35.78	Protein JAZ13 OS=Arabidopsis thaliana OX=3702 GN=JAZ13 PE=1 SV=1	[more]
A2XSX6	2.9e-05	34.26	Protein TIFY 9 OS=Oryza sativa subsp. indica OX=39946 GN=TIFY9 PE=3 SV=1	[more]
Q7XV97	2.9e-05	34.29	Protein TIFY 9 OS=Oryza sativa subsp. japonica OX=39947 GN=TIFY9 PE=1 SV=1	[more]

BLAST of Lsi01G001380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI51	1.1e-47	81.82	Tify domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523460 PE=3 S...	[more]
A0A1S3AZ71	1.9e-47	81.06	protein TIFY 5A OS=Cucumis melo OX=3656 GN=LOC103484359 PE=3 SV=1	[more]
A0A6J1KRQ2	3.0e-45	84.55	protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111497036 PE=3 SV=1	[more]
A0A6J1EFE1	1.9e-44	83.74	protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111433812 PE=3 SV=1	[more]
A0A6J1EE47	4.8e-43	80.47	protein TIFY 5A OS=Cucurbita moschata OX=3662 GN=LOC111433321 PE=3 SV=1	[more]

BLAST of Lsi01G001380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883218.1	6.8e-52	89.06	protein TIFY 5A-like [Benincasa hispida]	[more]
XP_004134648.2	2.3e-47	81.82	protein TIFY 5A [Cucumis sativus] >KGN49405.1 hypothetical protein Csa_004213 [C...	[more]
XP_008439622.1	3.8e-47	81.06	PREDICTED: protein TIFY 5A [Cucumis melo]	[more]
KAG7026459.1	2.8e-45	83.06	Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6594460.1	3.6e-45	83.87	Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi01G001380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30135.1	4.0e-18	43.75	jasmonate-zim-domain protein 8	[more]
AT2G34600.1	1.9e-15	44.12	jasmonate-zim-domain protein 7	[more]
AT3G22275.1	5.8e-09	35.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G13220.1	2.7e-06	35.04	jasmonate-zim-domain protein 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010399	Tify domain	SMART	SM00979	tify_2	coord: 40..74 e-value: 5.9E-10 score: 49.1
IPR010399	Tify domain	PFAM	PF06200	tify	coord: 41..72 e-value: 5.1E-16 score: 57.7
IPR010399	Tify domain	PROSITE	PS51320	TIFY	coord: 40..74 score: 12.609077
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	Jas_motif	coord: 98..126 e-value: 1.1E-10 score: 41.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..128
None	No IPR available	PANTHER	PTHR33077:SF99	SUBFAMILY NOT NAMED	coord: 10..128
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 10..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001380.1	Lsi01G001380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031347	regulation of defense response
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005634	nucleus