Lsi01G001320 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein HLP
Location	chr01: 1358013 .. 1360415 (-)
RNA-Seq Expression	Lsi01G001320
Synteny	Lsi01G001320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAGAGTTCTTGTTTCCATTGTTCGTCTTCGTCTCTTTCCCCGCTGTGCTGGTTTTGCAACTTAGATTTTAGACATGGCTGCTGCTTTTGCTTCAACGTTTTCCCGAGGTATGCGATTTTCTGAATTAGTGGATTCTGGAACTTCTTTTGTTCTTTTATTTGGAGCTGCTATTGCTATAAGCGTTGTTGCCTGTTCTTTTAGGATTCTTCTGCTTGTGTTGAACCTTGATTTCACCTGATTCAGCTTAGGAAATGCTAGTTTTTCTATTTCTTGTCGACTGCTAGAAAAACAATTCTCAATTGATCTTGCTCACATGTATATTTGCTCTTTTTTGAATGTTACCAATTTGTTTTTAGAATACTTTTCAGGTTATACAAAATATTTGCTAAGAAACATATTTTGTGAAAAGAGATAATGTGCTAAAGAGAGGGAGTGCCTTCTTAATGTTAGTTCTCTATCATCATCAACTATCCACGGAACTTGTTAGCTGCAAGTCGCATCTGATTTCTCTCCCTTTTTTTTGTCCCACAAGAGATCAGATAGGACCGTGGAGTAAAAGTTGAATTTAAACATTATGCTATATGTCAATTTTTTAAAATTAGTTTGAATACTTAAACTAGTTTTTAGTCTTTTTTTTTCTTACTTATAGCTCCTTTGTACTTGATAGTTTGTGCACACATTGTTGTAAAATTTATCTTAACTTTGATATTTCAATCTTTTATTTGTCTTATTTTAGTTTTGTTTTTCTAGTTGTTGTGAAACTCATTTTAGCTCATTGTTTCTTGCTCAATGTTTCTGGAAAATTAAACTAGTCGGCCGTTCATTATTGGGTGGGCTTGGAAACAATTTGTCTGGTTCATTGACCGCATCAAATGAGACAGTATGCAGCAGTTTCATCTCGCAGGTCTACTTCTCCGAAATTTTAGTCTACCCATCTGACTTTGAACCCTAAAAAGAGAGTCTAAATAGAGAATGCCTTTGTAATTTTTTCATATGGATGAACATGGAGGGTAAGGAAACAGAGGAATTAAATTTTTCATGCCTTTGCCACTACTTGTATATAGATTACTATTTAGGGGAGAGTATGGCTATAAAATAGGTATCTAGAAACAGAGCATTTTTGCAGAACTCGGAGAATTTCATTATGAGGCTTGTTTGGATAATGTGGATTTAGTTTTTGCAAGTGATCTTCTGGAATAGAAACAGAAGCTCAGTGTTTGTAAACTAAATTTGTGCTTTGCTTGTGCACAATGTCCATGCTTAAATTTGATGATGGCAATTTTCTGGACATCGACGTATAATTATCAATACCTTGAAGAGCTACTGAAATGAAGAAAGGGTTAATCAGTAAATTTTAAGAGGGCATAAAATAATTTGGAGAGAAATGTTGATTTTATTAAATCATTGCAAGCGGCATAAAATGCTGACGAAACATCGATATACTACTATCAACTTCTGATATGACCTTGTGTATTGCCATATTTTGCAGCAACAAAGAACTTTCATACAGATGAGAACTGTGCTAAAAGTAGTGGACAATTCAGGGGCAAAAAAGGTGATGTGCATACAATCTTTGAAGGGAAAGAAAGGAGCACGACTAGGAGACACTATTGTCGCATCAGTGAAAGAAGCCCATCCTAATGGAAAAGTAAAGAAAGGAAAGGTTGTATATGGTGTGGTTGTGCGAGCTGCAATGCAAAGAGGTCGATGTGATGGGAGTGAGGTCAAGTTTGATGATAATGCTGTTGTACTCGTAGATAAGCAAGGCCAGCCTATTGGGACAAGAGTGTTCGGCCCAGTTCCTCATGAACTCAGGAAGAAAAAGCACGTAAAAATTCTTACTTTGGCAGAGCACATTGCTTGAATCAATCAATAATCAGATCGGAGCCAAGGCTAGAAGGTTATTTTTGTGAACTTCTTGATGCTGTGCCCAAAAGCATAACCCCATTGAGGTTTATTTGGAAGAAAGAAGTGGAACCTGATAAATTGTTTTTGGCAAATAATAACAGGAAAGTTGTTGCAGTTGCTCTTTCGGTTGCAATTCCTCAGGTTCTTCTCAATATTCTTCCAACACAAGTCACATCATTGAAGGAAAGTTATTGATCTGTCTTTTATTTAGGCAGTTACATTTATGATTTTGACAAACTACGATGTGACTGACTGGTTAGTTTTCGAACCCGGTTCTCCCAATGCTCGAATGCCATACAAAATACAAACATTGCTGAAAACTTTTAAATGTAGTTTGAAGGCGTTTCTTGGACTGTCTTTGTCTATGCATATATTTATCCATAATTTTTGTATAATAAAAAGTCAAAGTATTTTGTAGCTTAAATGCATCATACAGCGGGAATTGCCTAGACTAGTGAGTTCTATCACCACTTGCATTAAAATGCTTATTGCA

mRNA sequence

TGCAGAGTTCTTGTTTCCATTGTTCGTCTTCGTCTCTTTCCCCGCTGTGCTGGTTTTGCAACTTAGATTTTAGACATGGCTGCTGCTTTTGCTTCAACGTTTTCCCGAGTCGGCCGTTCATTATTGGGTGGGCTTGGAAACAATTTGTCTGGTTCATTGACCGCATCAAATGAGACAGTATGCAGCAGTTTCATCTCGCAGCAACAAAGAACTTTCATACAGATGAGAACTGTGCTAAAAGTAGTGGACAATTCAGGGGCAAAAAAGGTGATGTGCATACAATCTTTGAAGGGAAAGAAAGGAGCACGACTAGGAGACACTATTGTCGCATCAGTGAAAGAAGCCCATCCTAATGGAAAAGTAAAGAAAGGAAAGGTTGTATATGGTGTGGTTGTGCGAGCTGCAATGCAAAGAGGTCGATGTGATGGGAGTGAGGTCAAGTTTGATGATAATGCTGTTGTACTCGTAGATAAGCAAGGCCAGCCTATTGGGACAAGAGTGTTCGGCCCAGTTCCTCATGAACTCAGGAAGAAAAAGCACGTAAAAATTCTTACTTTGGCAGAGCACATTGCTTGAATCAATCAATAATCAGATCGGAGCCAAGGCTAGAAGGAAAGTTGTTGCAGTTGCTCTTTCGGTTGCAATTCCTCAGGTTCTTCTCAATATTCTTCCAACACAAGTCACATCATTGAAGGAAAGTTATTGATCTGTCTTTTATTTAGGCAGTTACATTTATGATTTTGACAAACTACGATGTGACTGACTGGTTAGTTTTCGAACCCGGTTCTCCCAATGCTCGAATGCCATACAAAATACAAACATTGCTGAAAACTTTTAAATGTAGTTTGAAGGCGTTTCTTGGACTGTCTTTGTCTATGCATATATTTATCCATAATTTTTGTATAATAAAAAGTCAAAGTATTTTGTAGCTTAAATGCATCATACAGCGGGAATTGCCTAGACTAGTGAGTTCTATCACCACTTGCATTAAAATGCTTATTGCA

Coding sequence (CDS)

ATGGCTGCTGCTTTTGCTTCAACGTTTTCCCGAGTCGGCCGTTCATTATTGGGTGGGCTTGGAAACAATTTGTCTGGTTCATTGACCGCATCAAATGAGACAGTATGCAGCAGTTTCATCTCGCAGCAACAAAGAACTTTCATACAGATGAGAACTGTGCTAAAAGTAGTGGACAATTCAGGGGCAAAAAAGGTGATGTGCATACAATCTTTGAAGGGAAAGAAAGGAGCACGACTAGGAGACACTATTGTCGCATCAGTGAAAGAAGCCCATCCTAATGGAAAAGTAAAGAAAGGAAAGGTTGTATATGGTGTGGTTGTGCGAGCTGCAATGCAAAGAGGTCGATGTGATGGGAGTGAGGTCAAGTTTGATGATAATGCTGTTGTACTCGTAGATAAGCAAGGCCAGCCTATTGGGACAAGAGTGTTCGGCCCAGTTCCTCATGAACTCAGGAAGAAAAAGCACGTAAAAATTCTTACTTTGGCAGAGCACATTGCTTGA

Protein sequence

MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA

Homology

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BLAST of Lsi01G001320 vs. ExPASy Swiss-Prot
Match: Q93Z17 (50S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLP PE=1 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.2e-63
Identity = 135/175 (77.14%), Postives = 146/175 (83.43%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQ--RTFIQMRTVLKVVD 60
           MAAAFAS  +R GRSLLGGL N   GS+ +SN  +  S +SQQQ  RTFIQM TVLKVVD
Sbjct: 1   MAAAFASRLTRGGRSLLGGLNN--GGSMNSSNGMMNESILSQQQQRRTFIQMGTVLKVVD 60

Query: 61  NSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDG 120
           NSGAKKVMCIQ+LKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQRGR DG
Sbjct: 61  NSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDG 120

Query: 121 SEVKFDDNAVVLVDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           SEV+FDDNAVVLVD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 121 SEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 173

[Close]

BLAST of Lsi01G001320 vs. ExPASy Swiss-Prot
Match: Q84JG5 (50S ribosomal protein HLL, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLL PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.0e-48
Identity = 118/196 (60.20%), Postives = 139/196 (70.92%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSL-TASNETVCSSFISQQQ-RTFIQMRTVLKVVD 60
           MA A AS  S+ GRSLLGGL N  SG + ++SN  +  S +SQQQ RTFIQM T+LK VD
Sbjct: 1   MATALASKLSK-GRSLLGGLCNAFSGLMNSSSNGMMNGSILSQQQHRTFIQMGTILKCVD 60

Query: 61  NSGAKKVMCIQSLKGKKGARLGDTIVASVKEAH------------PNGKVKKGKVVYGVV 120
           NS AK+VMCIQSL+GKKGARLGD IV SVKEA+            P GKVKKG VVYGVV
Sbjct: 61  NSCAKEVMCIQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVYGVV 120

Query: 121 VRAAMQRGRCDGSEVKFDDNAVVLV---DKQG--------------QPIGTRVFGPVPHE 166
           VRAAM +GR DGS+VKFDDNA+V+V   +K+G              QP GTRVFGPVPHE
Sbjct: 121 VRAAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEYNQPTGTRVFGPVPHE 180

[Close]

BLAST of Lsi01G001320 vs. ExPASy Swiss-Prot
Match: A8GVC4 (50S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rplN PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.6e-32
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 48  IQMRTVLKVVDNSGAKKVMCIQSLKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 107
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 108 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 166
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]

BLAST of Lsi01G001320 vs. ExPASy Swiss-Prot
Match: Q1RHN1 (50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rplN PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.6e-32
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 48  IQMRTVLKVVDNSGAKKVMCIQSLKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 107
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 108 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 166
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]

BLAST of Lsi01G001320 vs. ExPASy Swiss-Prot
Match: Q9ZCR5 (50S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=rplN PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-32
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 48  IQMRTVLKVVDNSGAKKVMCIQSLKGKKG--ARLGDTIVASVKEAHPNGKVKKGKVVYGV 107
           IQM+++L+V DNSGAKKVMCI+ L G     A+LGD IV S+KEA P GKVKKG V  GV
Sbjct: 2   IQMQSILEVADNSGAKKVMCIKVLGGSHHMMAKLGDVIVVSIKEAIPGGKVKKGDVYKGV 61

Query: 108 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 166
           +VR      R DGS +KFD NA+VL++KQ +PIGTRVFGPV  ELR KK+V+I++LAE +
Sbjct: 62  IVRTKTGVVRSDGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEEV 121

[Close]

BLAST of Lsi01G001320 vs. ExPASy TrEMBL
Match: A0A6J1EE21 (50S ribosomal protein HLP, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111433311 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.7e-81
Identity = 161/166 (96.99%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MAAAFAS  SRVGRSLLGGLG NLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS
Sbjct: 1   MAAAFASKCSRVGRSLLGGLGKNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSE
Sbjct: 61  GAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. ExPASy TrEMBL
Match: A0A1S3AZ44 (50S ribosomal protein HLP, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484354 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.7e-81
Identity = 160/166 (96.39%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MAAAFAS FSRV RSLLGGLGNNLS SLT SNET+CSSFISQQQRTFIQMRTVLKVVDNS
Sbjct: 1   MAAAFASKFSRVSRSLLGGLGNNLSTSLTTSNETICSSFISQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSE
Sbjct: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. ExPASy TrEMBL
Match: A0A6J1IUK7 (50S ribosomal protein HLP, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111478713 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.8e-80
Identity = 160/166 (96.39%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MAAA AS  SRVGRSLLGGLG NLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS
Sbjct: 1   MAAALASKCSRVGRSLLGGLGKNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSE
Sbjct: 61  GAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. ExPASy TrEMBL
Match: A0A0A0LME7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401350 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.8e-80
Identity = 158/166 (95.18%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MA+AFAS FSRVGRSLLGGLGNNLSGSLT SNETVC+SFI+QQQRTFIQMRTVLKVVDNS
Sbjct: 1   MASAFASKFSRVGRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+ RCDGSE
Sbjct: 61  GAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKDRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. ExPASy TrEMBL
Match: A0A1S4DUR6 (50S ribosomal protein HLP, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC107990521 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.7e-80
Identity = 158/166 (95.18%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MA+AFAS FSRVGRSLLGGLGNNL GSLT SNETVC+SFI QQQRTFIQMRTVLKVVDNS
Sbjct: 1   MASAFASKFSRVGRSLLGGLGNNLYGSLTTSNETVCNSFIMQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSE
Sbjct: 61  GAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. NCBI nr
Match: XP_022926089.1 (50S ribosomal protein HLP, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 310.1 bits (793), Expect = 1.2e-80
Identity = 161/166 (96.99%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MAAAFAS  SRVGRSLLGGLG NLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS
Sbjct: 1   MAAAFASKCSRVGRSLLGGLGKNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSE
Sbjct: 61  GAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. NCBI nr
Match: XP_008439613.1 (PREDICTED: 50S ribosomal protein HLP, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 309.3 bits (791), Expect = 2.0e-80
Identity = 160/166 (96.39%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MAAAFAS FSRV RSLLGGLGNNLS SLT SNET+CSSFISQQQRTFIQMRTVLKVVDNS
Sbjct: 1   MAAAFASKFSRVSRSLLGGLGNNLSTSLTTSNETICSSFISQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSE
Sbjct: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. NCBI nr
Match: XP_022978898.1 (50S ribosomal protein HLP, mitochondrial-like [Cucurbita maxima] >KAG6581441.1 50S ribosomal protein HLP, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 307.8 bits (787), Expect = 5.8e-80
Identity = 160/166 (96.39%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MAAA AS  SRVGRSLLGGLG NLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS
Sbjct: 1   MAAALASKCSRVGRSLLGGLGKNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSE
Sbjct: 61  GAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. NCBI nr
Match: XP_004138663.1 (50S ribosomal protein HLP, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 5.8e-80
Identity = 158/166 (95.18%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MA+AFAS FSRVGRSLLGGLGNNLSGSLT SNETVC+SFI+QQQRTFIQMRTVLKVVDNS
Sbjct: 1   MASAFASKFSRVGRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+ RCDGSE
Sbjct: 61  GAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKDRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. NCBI nr
Match: XP_023545147.1 (50S ribosomal protein HLP, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.8 bits (787), Expect = 5.8e-80
Identity = 160/166 (96.39%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQRTFIQMRTVLKVVDNS 60
           MAAAFAS  SRVGRSLLGGLG NLSGSLTASN TVCSSFISQQQRTFIQMRTVLKVVDNS
Sbjct: 1   MAAAFASKCSRVGRSLLGGLGKNLSGSLTASNATVCSSFISQQQRTFIQMRTVLKVVDNS 60

Query: 61  GAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSE 120
           GAKKVMCIQ+LKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQ+GRCDGSE
Sbjct: 61  GAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSE 120

Query: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA
Sbjct: 121 VKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

[Close]

BLAST of Lsi01G001320 vs. TAIR 10
Match: AT5G46160.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 242.3 bits (617), Expect = 2.8e-64
Identity = 135/174 (77.59%), Postives = 146/174 (83.91%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQ-RTFIQMRTVLKVVDN 60
           MAAAFAS  +R GRSLLGGL N   GS+ +SN  +  S +SQQQ RTFIQM TVLKVVDN
Sbjct: 1   MAAAFASRLTRGGRSLLGGLNN--GGSMNSSNGMMNESILSQQQRRTFIQMGTVLKVVDN 60

Query: 61  SGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGS 120
           SGAKKVMCIQ+LKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQRGR DGS
Sbjct: 61  SGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGS 120

Query: 121 EVKFDDNAVVLVDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           EV+FDDNAVVLVD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 121 EVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 172

[Close]

BLAST of Lsi01G001320 vs. TAIR 10
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 241.9 bits (616), Expect = 3.7e-64
Identity = 135/175 (77.14%), Postives = 146/175 (83.43%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSLTASNETVCSSFISQQQ--RTFIQMRTVLKVVD 60
           MAAAFAS  +R GRSLLGGL N   GS+ +SN  +  S +SQQQ  RTFIQM TVLKVVD
Sbjct: 1   MAAAFASRLTRGGRSLLGGLNN--GGSMNSSNGMMNESILSQQQQRRTFIQMGTVLKVVD 60

Query: 61  NSGAKKVMCIQSLKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDG 120
           NSGAKKVMCIQ+LKGKKGARLGDTIVASVKEA PNGKVKKG VVYGVVVRAAMQRGR DG
Sbjct: 61  NSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDG 120

Query: 121 SEVKFDDNAVVLVDKQG-------QPIGTRVFGPVPHELRKKKHVKILTLAEHIA 167
           SEV+FDDNAVVLVD +        QPIGTRVFGPVPHELRKKKH+KIL LA+H+A
Sbjct: 121 SEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 173

[Close]

BLAST of Lsi01G001320 vs. TAIR 10
Match: AT1G17560.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 191.4 bits (485), Expect = 5.7e-49
Identity = 118/196 (60.20%), Postives = 139/196 (70.92%), Query Frame = 0


Query: 1   MAAAFASTFSRVGRSLLGGLGNNLSGSL-TASNETVCSSFISQQQ-RTFIQMRTVLKVVD 60
           MA A AS  S+ GRSLLGGL N  SG + ++SN  +  S +SQQQ RTFIQM T+LK VD
Sbjct: 1   MATALASKLSK-GRSLLGGLCNAFSGLMNSSSNGMMNGSILSQQQHRTFIQMGTILKCVD 60

Query: 61  NSGAKKVMCIQSLKGKKGARLGDTIVASVKEAH------------PNGKVKKGKVVYGVV 120
           NS AK+VMCIQSL+GKKGARLGD IV SVKEA+            P GKVKKG VVYGVV
Sbjct: 61  NSCAKEVMCIQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVYGVV 120

Query: 121 VRAAMQRGRCDGSEVKFDDNAVVLV---DKQG--------------QPIGTRVFGPVPHE 166
           VRAAM +GR DGS+VKFDDNA+V+V   +K+G              QP GTRVFGPVPHE
Sbjct: 121 VRAAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEYNQPTGTRVFGPVPHE 180

[Close]

BLAST of Lsi01G001320 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 52/120 (43.33%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 48  IQMRTVLKVVDNSGAKKVMCIQSL--KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGV 107
           IQ +T L V DNSGA+++MCI+ +    ++ A +GD IVA +KEA PN  +++ +V+  V
Sbjct: 2   IQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAV 61

Query: 108 VVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHI 166
           +VR   +  R +G+ +++DDNA V++D++G P GTRVFG +P ELR+    KI++LA  +
Sbjct: 62  IVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEV 121

[Close]

BLAST of Lsi01G001320 vs. TAIR 10
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 54.7 bits (130), Expect = 8.3e-08
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 48  IQMRTVLKVVDNSGAKKVMCIQSLKGKKG-------ARLGDTIVASVKEAHPNGKVKKGK 107
           + +   +   DN+GAK +  I S+KG KG       A +GD ++A+VK+  P+    + K
Sbjct: 20  LPVAATVNCADNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKK 79

Query: 108 VVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHE 150
           V+  V+VR      R DG  + F+DNA V+V+ +G+  G+ + GP+  E
Sbjct: 80  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124

The following BLAST results are available for this feature:

BLAST of Lsi01G001320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Z17	5.2e-63	77.14	50S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLP ...	[more]
Q84JG5	8.0e-48	60.20	50S ribosomal protein HLL, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HLL ...	[more]
A8GVC4	3.6e-32	60.83	50S ribosomal protein L14 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=...	[more]
Q1RHN1	3.6e-32	60.83	50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp...	[more]
Q9ZCR5	4.7e-32	60.83	50S ribosomal protein L14 OS=Rickettsia prowazekii (strain Madrid E) OX=272947 G...	[more]

BLAST of Lsi01G001320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EE21	5.7e-81	96.99	50S ribosomal protein HLP, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A1S3AZ44	9.7e-81	96.39	50S ribosomal protein HLP, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1IUK7	2.8e-80	96.39	50S ribosomal protein HLP, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0LME7	2.8e-80	95.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401350 PE=3 SV=1	[more]
A0A1S4DUR6	3.7e-80	95.18	50S ribosomal protein HLP, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC1079...	[more]

BLAST of Lsi01G001320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926089.1	1.2e-80	96.99	50S ribosomal protein HLP, mitochondrial-like [Cucurbita moschata]	[more]
XP_008439613.1	2.0e-80	96.39	PREDICTED: 50S ribosomal protein HLP, mitochondrial isoform X2 [Cucumis melo]	[more]
XP_022978898.1	5.8e-80	96.39	50S ribosomal protein HLP, mitochondrial-like [Cucurbita maxima] >KAG6581441.1 5...	[more]
XP_004138663.1	5.8e-80	95.18	50S ribosomal protein HLP, mitochondrial isoform X1 [Cucumis sativus]	[more]
XP_023545147.1	5.8e-80	96.39	50S ribosomal protein HLP, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G001320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46160.2	2.8e-64	77.59	Ribosomal protein L14p/L23e family protein	[more]
AT5G46160.1	3.7e-64	77.14	Ribosomal protein L14p/L23e family protein	[more]
AT1G17560.1	5.7e-49	60.20	Ribosomal protein L14p/L23e family protein	[more]
ATCG00780.1	1.1e-23	43.33	ribosomal protein L14	[more]
AT1G04480.1	8.3e-08	33.94	Ribosomal protein L14p/L23e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 47..166 e-value: 7.2E-63 score: 224.8
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 48..165 e-value: 6.3E-50 score: 168.3
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 19..166
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 47..166 score: 23.549667
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 47..166 e-value: 8.9E-48 score: 163.2
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 48..165
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAM	TIGR01067	TIGR01067	coord: 48..165 e-value: 2.1E-43 score: 145.1
None	No IPR available	PANTHER	PTHR11761:SF38	50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1	coord: 19..166
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 104..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001320.1	Lsi01G001320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome