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Lsi01G001290 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGTACACATGCAAGAGGCAAAATACTTCAAGAGAAAAAAAAAATGTGCAGAAGAAGGAGAATGAAAGAATCAAAGATGGCAGCTTTCTGTGATTTCTTATCTGGAAGTGGAAGGAGTATTTTTGGGGACACTGCTCACAGTGGTGAAGCAAATAAATAGCGGAAGCGATGCCATTGCCATTGACAACCCGATTGACTCCTCTCTTCCGAGGCACTGTAACAAAAAACCCTAATTCCAATTCTGGGAGACGACGACGACTCTGTTTCTGTCATTTAGGCAATACCAAATTATGAGTCCTAATACGAAGGCCCGCTTCAGAGATTGAGCTTTTTTCATGCCCTCTCCCATCTCTCTGTCGATTCCCTTTCCTTTCTATCCAGACGCATTCATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACCGCCTCCGCCTCCGTTTGATCCCAGTCGAAGTAATATTTCTCTCTCCATCTTGATTTTCTGATTCTGAGGGGTTTCTTTCTACTCGTTGTTGTTCGATGAATTTTTTCGTTTGTTGGGTTTTGTTAGGTATTGAATGTCGTTTTGGGGATTTATTAGGGTTGGGTGGTTCTGATCTTAACTCTCGAGTAATGGGGTTTTTGTTTTTTCAAGAACTCGAGATTGATGGATTTATACATTCTAGCTATGAGAATGGGCGAATTGGCTCCCCTCTTCTTTATGATATTGTAGCAACAAACTGCAATTGTTGATCTTGTCCGTGAGTTTTCTACTTTGCATTTGGACATTCAGGTTTTGAAACTGTTTTTCAATCTTTGGGTTTGCCGCTTTGTTGTATGAGATGGTAAAATAGAGTTGATCCGTTCCCAATTTGAATGGCGAGCACAGATGTCTTAAGAGACGTTTCTTCTTAAAATCTTCCAGTTCCATGGATTGTAATTGTATTCATCAAATTTTTCTCTCTTTTGAAGTGATTGGTATCATTAAACGGAAGGCCTTGATAAAAGAATTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTCGAGCTTCAAAGAAAGTGGGACGAGGTTTGTAATTCAGCCTTATATTCCTTCTGTTTCAATGTTTTTTTTTCCTTGGGACGTTCTATCAAAATGAATCGATACTTGAGCTGTCGAAATTTTCTCTGATTGACAAACTATACTAGTGAATCACTAATCTCCGGTCATTTTCTATGAACATTCCTTCTGTTTCAATGTTTTTTTCTTGGGACGTTTTATCAAAATGATTCACTACTCGAGCTGTCGAAATTTTTCTTTGATCGAGCAACTATAGTAGTGAACCACTAATCTCTGGTCATTTCTATGAACCAGATGTTTGAACTGGAGATTTCTGCCATAACTAATAGTTTGAGCTTAAGTCCCCATCTGCCCGGTATCCAAATCTTTAACCTTTGAGTGTGTACTTTTTAAAAGTCCTTTTTCCATTACCTTCTATTTGGACTTGCTTCAGAAATTGGAAATTGTATAATTTGTTTTGAGCTCATTCTATCATATCGCTTGGTCTCATCTGTTCTGCCTTTCTAGACTCCTTCTAGGTCAGACAAGTTTTCCTGATCACAATAATTATAATTTCTTTTACTGTCGGAGAATTATTCAATGTGGCTGCCTCATAATAATGGTTAAATATGGATTAAAAAATTTGCATGCCCCCTAATGAACCACTATATATAAATTTGAAGTAGTTTTTTCTCATAAATCCAATGGTAAAACACTGTTAGCCACATTGGATAATTTCTCTTCATTGTGCAATGGGCTTCTATGTGATTCCAGATTTGTGACCTTCGATTATTCACCTGTGCTTACCACAAGGTTATAAAGATTATAATATACTAGGTCTGTGGCTGGTAATTTATTTCTGGTAGTTATACTTATATCTAAGATTATAAGCTATTACTATTAAGGAACGTGGCTTTAGGTAGCAATTAGCCATAGAGAAATTATTTGTGGAGAATTCATATCGAGGTTGAGAATTTGTATGGATGGCTGAGATATTTTAACTAAACATAAATTCCATTTTCATGATGGTAATGATATACTGGATCTGAGTGATTCTTTTTACATGTTGAAAAATCCAATTATTTAATTTAAACTTTCTTTACTTACTCATTGTGTCTTGATATGCTTGCAGCCATATATCGAGTTAAAAGCACCTGATGATCCTAGAAAGGAGACAACGAAACCTAGCAAACGTCAAAAGAAAACCCGCTAGGTATTAATATATTTAATAAGCATTTTAGGAATTGCTTAGATCATCATCTACTAAGCTTTTTGTAGCTTTTAGTCTCATATGGGGAATTATTTTTCCCCCTCTTTTCGTTTTATAAAATAATAACAGTAGGCGTTCAAGCTGAGGTTACGCCATATAATATTTCAATTGATAAAAGCCATAAGAATATTTAGATCACGTTTGATAACTTTATGGTTTTTGGTTTTTGAATATTAAGCTTATAAATACTACTTTTATTTTGTGAGTGTCTTTGTTTTGCTTTCTTGCTTTCTACATTTTACAAATATGTTCTAAATAGAATGGCCATCGTTCTTAAAACTTATCAAAGTGGAATGAGTTTACACCTGTGATTACTCAACAAACTCATGATGAATGCTACTTGGAATGTTAATGTTATAACGTACATGATGCATTTAACAACAGCTTTTCCCACTTTAGAAGACCATGACAATTGTTTCCAGTGCAAACATATTTCTTGAGTTAGCAATTCTATTACCTTCTACCATTTCTTAATCTTTTTTTTCCTCCCTCTCTTGCAGGCAATAAATATATTTGATACTGCTTACCTGACTTGCGAATCTGATGATTCTTCCGTTCTGCAAGGGAGGCCCATGCACAAAATTGATAATCTGCTATGAATAGGCTAATTACTCTATGGATCCATCAATTTGTACACTTAGTTACGAAAACAGTGAAGTATATAAAATATTTGTGTGCTGTATGTATTCATTTTGTGTGCGATGATATCACTACATAGCGGTAGGATTTATTTTTTTGTCAGCAAAAACAGGCTTACGGAATTTATTCGTTCACGACCTTTGAATGATGGACTTCATTTCCTTTTCTATACATTGCATTTAGCCTTTATTTGTTTGATTGAAACCATGTGAACCACCC CGTACACATGCAAGAGGCAAAATACTTCAAGAGAAAAAAAAAATGTGCAGAAGAAGGAGAATGAAAGAATCAAAGATGGCAGCTTTCTGTGATTTCTTATCTGGAAGTGGAAGGAGTATTTTTGGGGACACTGCTCACAGTGGTGAAGCAAATAAATAGCGGAAGCGATGCCATTGCCATTGACAACCCGATTGACTCCTCTCTTCCGAGGCACTGTAACAAAAAACCCTAATTCCAATTCTGGGAGACGACGACGACTCTGTTTCTGTCATTTAGGCAATACCAAATTATGAGTCCTAATACGAAGGCCCGCTTCAGAGATTGAGCTTTTTTCATGCCCTCTCCCATCTCTCTGTCGATTCCCTTTCCTTTCTATCCAGACGCATTCATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACCGCCTCCGCCTCCGTTTGATCCCAGTCGAATGATTGGTATCATTAAACGGAAGGCCTTGATAAAAGAATTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTCGAGCTTCAAAGAAAGTGGGACGAGCCATATATCGAGTTAAAAGCACCTGATGATCCTAGAAAGGAGACAACGAAACCTAGCAAACGTCAAAAGAAAACCCGCTAGGCAATAAATATATTTGATACTGCTTACCTGACTTGCGAATCTGATGATTCTTCCGTTCTGCAAGGGAGGCCCATGCACAAAATTGATAATCTGCTATGAATAGGCTAATTACTCTATGGATCCATCAATTTGTACACTTAGTTACGAAAACAGTGAAGTATATAAAATATTTGTGTGCTGTATGTATTCATTTTGTGTGCGATGATATCACTACATAGCGGTAGGATTTATTTTTTTGTCAGCAAAAACAGGCTTACGGAATTTATTCGTTCACGACCTTTGAATGATGGACTTCATTTCCTTTTCTATACATTGCATTTAGCCTTTATTTGTTTGATTGAAACCATGTGAACCACCC ATGCCCTCTCCCATCTCTCTGTCGATTCCCTTTCCTTTCTATCCAGACGCATTCATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACCGCCTCCGCCTCCGTTTGATCCCAGTCGAATGATTGGTATCATTAAACGGAAGGCCTTGATAAAAGAATTAGCTGCTGCGTATCATGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTCGAGCTTCAAAGAAAGTGGGACGAGCCATATATCGAGTTAAAAGCACCTGATGATCCTAGAAAGGAGACAACGAAACCTAGCAAACGTCAAAAGAAAACCCGCTAG MPSPISLSIPFPFYPDAFMADESQQPQSESQPPLEVDSAPPPPPPPPFDPSRMIGIIKRKALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETTKPSKRQKKTR Homology
BLAST of Lsi01G001290 vs. ExPASy TrEMBL
Match: A0A0A0KM14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524060 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.8e-42 Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 0
BLAST of Lsi01G001290 vs. ExPASy TrEMBL
Match: A0A5D3CQ43 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009190 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 6.2e-42 Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0
BLAST of Lsi01G001290 vs. ExPASy TrEMBL
Match: A0A1S3AZS8 (uncharacterized protein LOC103484351 OS=Cucumis melo OX=3656 GN=LOC103484351 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 6.2e-42 Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0
BLAST of Lsi01G001290 vs. ExPASy TrEMBL
Match: A0A6J1KMP8 (uncharacterized protein LOC111497089 OS=Cucurbita maxima OX=3661 GN=LOC111497089 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 1.0e-36 Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0
BLAST of Lsi01G001290 vs. ExPASy TrEMBL
Match: A0A6J1EGC9 (uncharacterized protein LOC111433847 OS=Cucurbita moschata OX=3662 GN=LOC111433847 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35 Identity = 91/118 (77.12%), Postives = 99/118 (83.90%), Query Frame = 0
BLAST of Lsi01G001290 vs. NCBI nr
Match: XP_004134646.1 (uncharacterized protein LOC101211064 [Cucumis sativus] >KGN49417.1 hypothetical protein Csa_003828 [Cucumis sativus]) HSP 1 Score: 181.0 bits (458), Expect = 5.8e-42 Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 0
BLAST of Lsi01G001290 vs. NCBI nr
Match: XP_038881750.1 (uncharacterized protein LOC120073165 isoform X1 [Benincasa hispida]) HSP 1 Score: 180.6 bits (457), Expect = 7.5e-42 Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0
BLAST of Lsi01G001290 vs. NCBI nr
Match: XP_008439608.1 (PREDICTED: uncharacterized protein LOC103484351 [Cucumis melo] >KAA0052527.1 uncharacterized protein E6C27_scaffold120G001280 [Cucumis melo var. makuwa] >TYK13298.1 uncharacterized protein E5676_scaffold255G009190 [Cucumis melo var. makuwa]) HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41 Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0
BLAST of Lsi01G001290 vs. NCBI nr
Match: KAG6581445.1 (hypothetical protein SDJN03_21447, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 177.2 bits (448), Expect = 8.3e-41 Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0
BLAST of Lsi01G001290 vs. NCBI nr
Match: KAG7034738.1 (hypothetical protein SDJN02_04468, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 174.9 bits (442), Expect = 4.1e-40 Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of Lsi01G001290 vs. TAIR 10
Match: AT4G18400.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 94.7 bits (234), Expect = 5.1e-20 Identity = 62/107 (57.94%), Postives = 75/107 (70.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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