Lsi01G001080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein SKIP19-like
Location	chr01: 1130553 .. 1131654 (-)
RNA-Seq Expression	Lsi01G001080
Synteny	Lsi01G001080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAATCATAATCCCATGGAATCGACCTCCATGATTCAGCAGTCGGAAGCGCAAGCGAGTAACTGCCTTGAACTGCCTGCAAATTTCACGTCTATGATTCTCCTGAAGCCAGGCGCCATTGAAATCCTCTCCAGCGCTCAAAATGTCTGCTCTTCCTGGCGCAAGATCTGCAAGAATCCTCTCATGTGGTGTGTCATCGATATGCACAATTCGGGTGGTTCGCATAATATGGGTCACCGTTTGGAGATAATGTGATTGCTGTTTACCGTAGTTGTGGCCAATCGGTCGATATCAACATTGAATACTTTCGCACTGATGAATTGCTCCTATACATCACGAATAGGTATCAATTCTATCTGCTCCACTACATAATTTTAACCTTTCTGTTGAACATTGAAAGAGAAGAAGTTTAAATCCCACTGATTGCCCAATTTCTTGAGAAATTACGGTTCGTTCATTTTCCTTGAGAATTATCTGACATTTCCTTACATTTCCTAACCTTGCACTAATAATTGAAGTTGAACCCTATGGAGCATATGCAATTCCATTTGATTTTCCTTTATCTTTGTCTTCTATTTCAAATAAGAGAAATTTCCACTAGCCCAAAATGGATTGCAGACCCTATGGAGCCCAAAGATTGTTTGGAACTGTTTTCTTATTGTGACAACCTTTGTTGTTTCATTGATATTGACGTTTCTAACTTCATATTCACTTGTTACAGTTCAAAACAACTTAGAAGACCCCGGATTGCACACTGCTATGGTATTTCAGACGAGAGATTGTCTGAAGCAGTTTCAAACCTTCCATTGTTGGAGCATCTTGAAATATGAATGCATTTATTTTTTGTGAAAACTTTGAAAGCTGTTGGACAGTGTTGCCGTTTTCTGAAATATCTGATACTGAACGGAAAGTTTAATCGAGGGAAAGGTTTTGACAACGAGGCCCTTGCTGTTCCTGAAAGAACGCAAGTGTTTTTTACCGTTCAAATATTGGGCAATGTCCTAACTAACACAGGCTTGCAGGGCATTCCTGATGGTTGTCCTGATTTAGGAACTCTTGATTTACGCCATTGTTTCAATTTACATTTGACGGGGCAGTTGAG

mRNA sequence

TCCAATCATAATCCCATGGAATCGACCTCCATGATTCAGCAGTCGGAAGCGCAAGCGAGTAACTGCCTTGAACTGCCTGCAAATTTCACGTCTATGATTCTCCTGAAGCCAGGCGCCATTGAAATCCTCTCCAGCGCTCAAAATGTCTGCTCTTCCTGGCGCAAGATCTGCAAGAATCCTCTCATGTGGTGTGTCATCGATATGCACAATTCGGGTGGTTCGCATAATATGGGTCACCGTTTGGAGATAATTTGTGGCCAATCGGTCGATATCAACATTGAATACTTTCGCACTGATGAATTGCTCCTATACATCACGAATAGTTCAAAACAACTTAGAAGACCCCGGATTGCACACTGCTATGGTATTTCAGACGAGAGATTGTCTGAAGCAGTTTCAAACCTTCCATTGTTGGAGCATCTTGAAATATGAATGCATTTATTTTTTGTGAAAACTTTGAAAGCTGTTGGACAGTGTTGCCGTTTTCTGAAATATCTGATACTGAACGGAAAGTTTAATCGAGGGAAAGGTTTTGACAACGAGGCCCTTGCTGTTCCTGAAAGAACGCAAGTGTTTTTTACCGTTCAAATATTGGGCAATGTCCTAACTAACACAGGCTTGCAGGGCATTCCTGATGGTTGTCCTGATTTAGGAACTCTTGATTTACGCCATTGTTTCAATTTACATTTGACGGGGCAGTTGAG

Coding sequence (CDS)

TCCAATCATAATCCCATGGAATCGACCTCCATGATTCAGCAGTCGGAAGCGCAAGCGAGTAACTGCCTTGAACTGCCTGCAAATTTCACGTCTATGATTCTCCTGAAGCCAGGCGCCATTGAAATCCTCTCCAGCGCTCAAAATGTCTGCTCTTCCTGGCGCAAGATCTGCAAGAATCCTCTCATGTGGTGTGTCATCGATATGCACAATTCGGGTGGTTCGCATAATATGGGTCACCGTTTGGAGATAATTTGTGGCCAATCGGTCGATATCAACATTGAATACTTTCGCACTGATGAATTGCTCCTATACATCACGAATAGTTCAAAACAACTTAGAAGACCCCGGATTGCACACTGCTATGGTATTTCAGACGAGAGATTGTCTGAAGCAGTTTCAAACCTTCCATTGTTGGAGCATCTTGAAATATGA

Protein sequence

SNHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI

Homology

[Close]

BLAST of Lsi01G001080 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-25
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 18  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNM 77
           +++N  ELP   TS IL + GAIEIL +AQ VC SWR++CK+P MW  IDMHN G   +M
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 78  GHRLEIIC--------GQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 137
            + LEI+C        G  VDI I YF T +LL YI + S  LR  R+  C  I+D+   
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 138 EAVSNLPLLEHLEI 144
           EAV  LP LE LE+
Sbjct: 135 EAVVKLP-LEELEL 147

[Close]

BLAST of Lsi01G001080 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-23
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 21  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMGHR 80
           N  ELP+  TS ILL+ GAIEIL +AQ VC  W ++CK+P MW  ID+ N        + 
Sbjct: 180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYD 239

Query: 81  LEIICGQSVD--------INIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLSEAV 140
           LE +C  +VD        I I Y+ T++L++YI + S  L+   +  C+ I+DE +++AV
Sbjct: 240 LESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAV 299

Query: 141 SNLPLLEHLEI 144
           S +PLLE+LE+
Sbjct: 300 SKVPLLEYLEV 310

[Close]

BLAST of Lsi01G001080 vs. ExPASy Swiss-Prot
Match: Q9S9V8 (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-19
Identity = 55/134 (41.04%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 21  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDM---HNSGGSHNM 80
           N  ELP   TS ILL+ GAIEIL +AQ VC SWR++C++P MW  ID+    N   S  +
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query: 81  GHRLEIICGQSVD--------INIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 140
            + +E +C ++VD        INI+Y      L YI + S  LRR  +  C  +    + 
Sbjct: 80  FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV 139

Query: 141 EAVSNLPLLEHLEI 144
           EA   LPLLE L+I
Sbjct: 140 EAAMKLPLLEELDI 153

[Close]

BLAST of Lsi01G001080 vs. ExPASy Swiss-Prot
Match: Q9M0U6 (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-15
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 0


Query: 1   SNHNPMESTSM--IQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICK 60
           S+ +P  +TS   + + E + SN  ELP +  S ILL+   +EIL +A+ VC SWR++ K
Sbjct: 4   SSSSPPLATSQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSK 63

Query: 61  NPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDI--------NIEY--FRTDELLLYITNS 120
           +PL+W  IDM N    + + + +E  C   VD+        NI+   F+T  LL Y+   
Sbjct: 64  DPLIWRRIDMRNLRRLYCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAER 123

Query: 121 SKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI 144
           S  LRR R+     I+   + EA+  LPLLE LE+
Sbjct: 124 SSNLRRLRVKGGQ-ITSVGIFEAIVKLPLLEELEL 156

[Close]

BLAST of Lsi01G001080 vs. ExPASy Swiss-Prot
Match: Q9M0U7 (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 46/147 (31.29%), Postives = 80/147 (54.42%), Query Frame = 0


Query: 2   NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPL 61
           N     ST  +++ + +  N ++LP   T+ ILL+    +IL +A+ +C +WR+ICK+P 
Sbjct: 20  NKRRTTSTMFLKKDDEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPS 79

Query: 62  MWCVID-----MHNSGGSHNMGHRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPR 121
           MW  I+     M+         H +++  G  ++INIE+F +D LL YI + S  L+   
Sbjct: 80  MWRKINLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLG 139

Query: 122 IAHCYGISDERLSEAVSNLPLLEHLEI 144
           I+    ++++ +   +  LPLLE L I
Sbjct: 140 ISIYEPMTNKGVMNGIEKLPLLETLVI 166

[Close]

BLAST of Lsi01G001080 vs. ExPASy TrEMBL
Match: A0A6J1CXS5 (F-box protein SKIP19-like OS=Momordica charantia OX=3673 GN=LOC111015784 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.7e-37
Identity = 87/134 (64.93%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 18  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNM 77
           +A N LELPA+ TSMILLK GAIEILSSAQ+VCS WRKICK+PLMW V+DMHN  G  +M
Sbjct: 10  EARNWLELPADITSMILLKLGAIEILSSAQSVCSLWRKICKDPLMWRVVDMHNM-GEWDM 69

Query: 78  GHRLEII--------CGQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 137
            + LE +        CG+ +DINI+YF T+ELL YIT SS QLRR RI  C+ I+D  LS
Sbjct: 70  DYDLEQMCIQAVDRSCGELIDINIQYFGTNELLQYITQSSNQLRRLRIVRCHSITDTGLS 129

Query: 138 EAVSNLPLLEHLEI 144
           EAVS LPLLEHLEI
Sbjct: 130 EAVSKLPLLEHLEI 142

[Close]

BLAST of Lsi01G001080 vs. ExPASy TrEMBL
Match: A0A6J1CYR2 (F-box protein SKIP19-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015699 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.7e-36
Identity = 86/133 (64.66%), Postives = 97/133 (72.93%), Query Frame = 0


Query: 19  ASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMG 78
           A N LELPA   S I+LK GAIEIL+SAQ VCSSW KICK+P MW VIDMHN G  H+M 
Sbjct: 8   ARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDME 67

Query: 79  HRLEIIC--------GQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLSE 138
           + LEI+C        GQ  DINIEYF TD+LL YIT S+ QLRR RIA CY ISD+ L++
Sbjct: 68  YNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTK 127

Query: 139 AVSNLPLLEHLEI 144
           AV  LPLLEHLEI
Sbjct: 128 AVLKLPLLEHLEI 140

[Close]

BLAST of Lsi01G001080 vs. ExPASy TrEMBL
Match: A0A6P3ZH66 (F-box protein SKIP19 OS=Ziziphus jujuba OX=326968 GN=LOC107415145 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.7e-34
Identity = 82/144 (56.94%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 8   STSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVID 67
           S S +QQ E +  N LELP + TS IL + GAIEIL+SAQNVCSSWR ICK+PLMW  ID
Sbjct: 4   SPSGVQQEEER--NWLELPRDVTSTILSRLGAIEILTSAQNVCSSWRNICKDPLMWRTID 63

Query: 68  MHNSGGSHNMG--------HRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPRIAH 127
           M N G ++ M         H +++ CGQ VDINIE+F TDELL Y+T+ S  +RR R+  
Sbjct: 64  MRNPGDTYGMDYDLETMCRHAIDLSCGQLVDINIEFFGTDELLKYLTDRSSMVRRLRLIC 123

Query: 128 CYGISDERLSEAVSNLPLLEHLEI 144
           CY ISD  LSEA + LPLLE LEI
Sbjct: 124 CYSISDNGLSEAAAKLPLLEDLEI 145

[Close]

BLAST of Lsi01G001080 vs. ExPASy TrEMBL
Match: A0A6J1ILH5 (F-box protein SKIP19-like OS=Cucurbita maxima OX=3661 GN=LOC111478528 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.5e-33
Identity = 82/146 (56.16%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 6   MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCV 65
           MES S       +A N LELPA+ TSMILLK G ++IL++AQ+VCSSWRKIC++PLMW V
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 66  IDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFRTDELLLYITNSSKQLRRPRI 125
           +DM  SG   +M + LE +C Q+VD        INIE+F TD+LL YIT SS QLR+ R+
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYINIEHFGTDDLLQYITQSSNQLRKLRL 122

Query: 126 AHCYGISDERLSEAVSNLPLLEHLEI 144
            +C  ISDE   +AVS LPLLE LEI
Sbjct: 123 VYCNRISDEGFIKAVSKLPLLEDLEI 148

[Close]

BLAST of Lsi01G001080 vs. ExPASy TrEMBL
Match: A0A6J1EGI8 (F-box protein SKIP19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433172 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 82/146 (56.16%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 6   MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCV 65
           MES S       +A N LELPA+ TSMILLK G ++IL++AQ+VCSSWRKIC++PLMW V
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 66  IDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFRTDELLLYITNSSKQLRRPRI 125
           +DM  SG   +M + LE +C Q+VD        I IE+F TD+LL YIT SS QLR  R+
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYIKIEHFGTDDLLQYITQSSNQLRELRL 122

Query: 126 AHCYGISDERLSEAVSNLPLLEHLEI 144
            +C  ISDE L +AVS LPLLE LEI
Sbjct: 123 VYCNRISDEGLIKAVSKLPLLEDLEI 148

[Close]

BLAST of Lsi01G001080 vs. NCBI nr
Match: XP_038883506.1 (F-box protein SKIP19-like [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 9.0e-45
Identity = 102/146 (69.86%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 6   MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCV 65
           MES S+I QSEA+A N L+LPA   SMILLK GAIEIL+SAQNVCSSWRKICK+PLMW V
Sbjct: 1   MESNSVI-QSEAEARNWLDLPAEVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRV 60

Query: 66  IDMHNSGGSHNMGHRLEII--------CGQSVDINIEYFRTDELLLYITNSSKQLRRPRI 125
           IDM NSG  ++M H LEI+        CGQ +DINIEYF TDELL YIT SS QLRR R+
Sbjct: 61  IDMRNSGNLYDMDHDLEIMCRHAVDRSCGQLIDINIEYFGTDELLQYITQSSNQLRRLRL 120

Query: 126 AHCYGISDERLSEAVSNLPLLEHLEI 144
           A CY ISDE L+EA+S LPLLEHLEI
Sbjct: 121 ADCYDISDEGLTEAISRLPLLEHLEI 145

[Close]

BLAST of Lsi01G001080 vs. NCBI nr
Match: XP_022146630.1 (F-box protein SKIP19-like [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 87/134 (64.93%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 18  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNM 77
           +A N LELPA+ TSMILLK GAIEILSSAQ+VCS WRKICK+PLMW V+DMHN  G  +M
Sbjct: 10  EARNWLELPADITSMILLKLGAIEILSSAQSVCSLWRKICKDPLMWRVVDMHNM-GEWDM 69

Query: 78  GHRLEII--------CGQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 137
            + LE +        CG+ +DINI+YF T+ELL YIT SS QLRR RI  C+ I+D  LS
Sbjct: 70  DYDLEQMCIQAVDRSCGELIDINIQYFGTNELLQYITQSSNQLRRLRIVRCHSITDTGLS 129

Query: 138 EAVSNLPLLEHLEI 144
           EAVS LPLLEHLEI
Sbjct: 130 EAVSKLPLLEHLEI 142

[Close]

BLAST of Lsi01G001080 vs. NCBI nr
Match: XP_022146498.1 (F-box protein SKIP19-like isoform X2 [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 7.6e-36
Identity = 86/133 (64.66%), Postives = 97/133 (72.93%), Query Frame = 0


Query: 19  ASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNMG 78
           A N LELPA   S I+LK GAIEIL+SAQ VCSSW KICK+P MW VIDMHN G  H+M 
Sbjct: 8   ARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDME 67

Query: 79  HRLEIIC--------GQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLSE 138
           + LEI+C        GQ  DINIEYF TD+LL YIT S+ QLRR RIA CY ISD+ L++
Sbjct: 68  YNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTK 127

Query: 139 AVSNLPLLEHLEI 144
           AV  LPLLEHLEI
Sbjct: 128 AVLKLPLLEHLEI 140

[Close]

BLAST of Lsi01G001080 vs. NCBI nr
Match: XP_015878944.1 (F-box protein SKIP19 [Ziziphus jujuba])

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-33
Identity = 82/144 (56.94%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 8   STSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVID 67
           S S +QQ E +  N LELP + TS IL + GAIEIL+SAQNVCSSWR ICK+PLMW  ID
Sbjct: 4   SPSGVQQEEER--NWLELPRDVTSTILSRLGAIEILTSAQNVCSSWRNICKDPLMWRTID 63

Query: 68  MHNSGGSHNMG--------HRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPRIAH 127
           M N G ++ M         H +++ CGQ VDINIE+F TDELL Y+T+ S  +RR R+  
Sbjct: 64  MRNPGDTYGMDYDLETMCRHAIDLSCGQLVDINIEFFGTDELLKYLTDRSSMVRRLRLIC 123

Query: 128 CYGISDERLSEAVSNLPLLEHLEI 144
           CY ISD  LSEA + LPLLE LEI
Sbjct: 124 CYSISDNGLSEAAAKLPLLEDLEI 145

[Close]

BLAST of Lsi01G001080 vs. NCBI nr
Match: KAG7034751.1 (Protein BREAST CANCER SUSCEPTIBILITY 1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.8 bits (382), Expect = 4.6e-33
Identity = 83/146 (56.85%), Postives = 103/146 (70.55%), Query Frame = 0


Query: 6   MESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCV 65
           MES S       +A N LELPA+ TSMILLK G ++IL++AQ+VCSSWRKIC++PLMW V
Sbjct: 3   MESNSSPNSLGEEARNWLELPADVTSMILLKLGPVDILTNAQDVCSSWRKICEDPLMWRV 62

Query: 66  IDMHNSGGSHNMGHRLEIICGQSVD--------INIEYFRTDELLLYITNSSKQLRRPRI 125
           +DM  SG   +M + LE +C Q+VD        INIE+F TD+LL YIT SS QLR+ R+
Sbjct: 63  VDMRYSGDWWDMDYDLEEMCRQAVDRSCGQLIYINIEHFGTDDLLQYITQSSNQLRKLRL 122

Query: 126 AHCYGISDERLSEAVSNLPLLEHLEI 144
            +C  ISDE L +AVS LPLLE LEI
Sbjct: 123 VYCNRISDEGLIKAVSKLPLLEDLEI 148

[Close]

BLAST of Lsi01G001080 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-26
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 18  QASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDMHNSGGSHNM 77
           +++N  ELP   TS IL + GAIEIL +AQ VC SWR++CK+P MW  IDMHN G   +M
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 78  GHRLEIIC--------GQSVDINIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 137
            + LEI+C        G  VDI I YF T +LL YI + S  LR  R+  C  I+D+   
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 138 EAVSNLPLLEHLEI 144
           EAV  LP LE LE+
Sbjct: 135 EAVVKLP-LEELEL 147

[Close]

BLAST of Lsi01G001080 vs. TAIR 10
Match: AT4G05497.1 (RNI-like superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-20
Identity = 55/134 (41.04%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 21  NCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPLMWCVIDM---HNSGGSHNM 80
           N  ELP   TS ILL+ GAIEIL +AQ VC SWR++C++P MW  ID+    N   S  +
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query: 81  GHRLEIICGQSVD--------INIEYFRTDELLLYITNSSKQLRRPRIAHCYGISDERLS 140
            + +E +C ++VD        INI+Y      L YI + S  LRR  +  C  +    + 
Sbjct: 80  FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV 139

Query: 141 EAVSNLPLLEHLEI 144
           EA   LPLLE L+I
Sbjct: 140 EAAMKLPLLEELDI 153

[Close]

BLAST of Lsi01G001080 vs. TAIR 10
Match: AT4G05490.1 (RNI-like superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-16
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 0


Query: 1   SNHNPMESTSM--IQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICK 60
           S+ +P  +TS   + + E + SN  ELP +  S ILL+   +EIL +A+ VC SWR++ K
Sbjct: 4   SSSSPPLATSQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSK 63

Query: 61  NPLMWCVIDMHNSGGSHNMGHRLEIICGQSVDI--------NIEY--FRTDELLLYITNS 120
           +PL+W  IDM N    + + + +E  C   VD+        NI+   F+T  LL Y+   
Sbjct: 64  DPLIWRRIDMRNLRRLYCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAER 123

Query: 121 SKQLRRPRIAHCYGISDERLSEAVSNLPLLEHLEI 144
           S  LRR R+     I+   + EA+  LPLLE LE+
Sbjct: 124 SSNLRRLRVKGGQ-ITSVGIFEAIVKLPLLEELEL 156

[Close]

BLAST of Lsi01G001080 vs. TAIR 10
Match: AT4G05475.1 (RNI-like superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15
Identity = 46/147 (31.29%), Postives = 80/147 (54.42%), Query Frame = 0


Query: 2   NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPL 61
           N     ST  +++ + +  N ++LP   T+ ILL+    +IL +A+ +C +WR+ICK+P 
Sbjct: 20  NKRRTTSTMFLKKDDEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPS 79

Query: 62  MWCVID-----MHNSGGSHNMGHRLEIICGQSVDINIEYFRTDELLLYITNSSKQLRRPR 121
           MW  I+     M+         H +++  G  ++INIE+F +D LL YI + S  L+   
Sbjct: 80  MWRKINLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLG 139

Query: 122 IAHCYGISDERLSEAVSNLPLLEHLEI 144
           I+    ++++ +   +  LPLLE L I
Sbjct: 140 ISIYEPMTNKGVMNGIEKLPLLETLVI 166

[Close]

BLAST of Lsi01G001080 vs. TAIR 10
Match: AT4G05470.1 (RNI-like superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14
Identity = 49/149 (32.89%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 2   NHNPMESTSMIQQSEAQASNCLELPANFTSMILLKPGAIEILSSAQNVCSSWRKICKNPL 61
           N     ST++      +  N ++LP   T+ ILL+    +IL +AQ VC  WR+ICK+P 
Sbjct: 26  NKKTTTSTTLESLLMKERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPS 85

Query: 62  MWCVID-----MHNSGGSHNMGHRLEIICGQSVDINI-EYFRTDELLLYITNSSKQLRRP 121
           MW  I+     M+N        H +++  G  ++IN+ E+F +D LL YIT+  + LR  
Sbjct: 86  MWRKINTRDCLMYNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITD--RNLRSL 145

Query: 122 RIAHCY-GISDERLSEAVSNLPLLEHLEI 144
            +  C+  ++   +  A++ +PLLE LE+
Sbjct: 146 GLGMCFPRVTKLGVVNAIAKIPLLETLEV 172

The following BLAST results are available for this feature:

BLAST of Lsi01G001080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0U9	2.2e-25	48.51	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]
Q9S9V9	1.5e-23	41.98	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9S9V8	3.0e-19	41.04	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4...	[more]
Q9M0U6	3.5e-15	36.77	Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE...	[more]
Q9M0U7	1.7e-14	31.29	Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE...	[more]

BLAST of Lsi01G001080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CXS5	5.7e-37	64.93	F-box protein SKIP19-like OS=Momordica charantia OX=3673 GN=LOC111015784 PE=4 SV...	[more]
A0A6J1CYR2	3.7e-36	64.66	F-box protein SKIP19-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6P3ZH66	7.7e-34	56.94	F-box protein SKIP19 OS=Ziziphus jujuba OX=326968 GN=LOC107415145 PE=4 SV=1	[more]
A0A6J1ILH5	6.5e-33	56.16	F-box protein SKIP19-like OS=Cucurbita maxima OX=3661 GN=LOC111478528 PE=4 SV=1	[more]
A0A6J1EGI8	1.9e-32	56.16	F-box protein SKIP19-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114331...	[more]

BLAST of Lsi01G001080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883506.1	9.0e-45	69.86	F-box protein SKIP19-like [Benincasa hispida]	[more]
XP_022146630.1	1.2e-36	64.93	F-box protein SKIP19-like [Momordica charantia]	[more]
XP_022146498.1	7.6e-36	64.66	F-box protein SKIP19-like isoform X2 [Momordica charantia]	[more]
XP_015878944.1	1.6e-33	56.94	F-box protein SKIP19 [Ziziphus jujuba]	[more]
KAG7034751.1	4.6e-33	56.85	Protein BREAST CANCER SUSCEPTIBILITY 1-like protein [Cucurbita argyrosperma subs...	[more]

BLAST of Lsi01G001080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05460.1	1.5e-26	48.51	RNI-like superfamily protein	[more]
AT4G05497.1	2.1e-20	41.04	RNI-like superfamily protein	[more]
AT4G05490.1	2.5e-16	36.77	RNI-like superfamily protein	[more]
AT4G05475.1	1.2e-15	31.29	RNI-like superfamily protein	[more]
AT4G05470.1	1.3e-14	32.89	RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 16..143 e-value: 5.2E-10 score: 40.8
None	No IPR available	PANTHER	PTHR38926:SF20	F-BOX PROTEIN SKIP19-RELATED	coord: 14..143
None	No IPR available	PANTHER	PTHR38926	F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 14..143
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 43..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001080.1	Lsi01G001080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding