Lsi01G000860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G000860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-damage-repair/toleration protein DRT111, chloroplastic
Location	chr01: 842874 .. 843197 (-)
RNA-Seq Expression	Lsi01G000860
Synteny	Lsi01G000860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTTGTTTGATTTTTCGAAGGTGGGCCCGGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGGACAGTAACACGGGTTCTGATATTCGAGATTACAGAACCCAATTTTCCAGTGGACGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACGAAGGCTTTGGTTGATCTTGATGGTCGATACTTCGGTGGAAGAGTGGTTCGAGCTACATTTTACGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACATGA

mRNA sequence

ATGGCTGCCTTGTTTGATTTTTCGAAGGTGGGCCCGGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGGACAGTAACACGGGTTCTGATATTCGAGATTACAGAACCCAATTTTCCAGTGGACGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACGAAGGCTTTGGTTGATCTTGATGGTCGATACTTCGGTGGAAGAGTGGTTCGAGCTACATTTTACGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACATGA

Coding sequence (CDS)

ATGGCTGCCTTGTTTGATTTTTCGAAGGTGGGCCCGGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGGACAGTAACACGGGTTCTGATATTCGAGATTACAGAACCCAATTTTCCAGTGGACGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACGAAGGCTTTGGTTGATCTTGATGGTCGATACTTCGGTGGAAGAGTGGTTCGAGCTACATTTTACGATGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACATGA

Protein sequence

MAALFDFSKVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT

Homology

[Close]

BLAST of Lsi01G000860 vs. ExPASy Swiss-Prot
Match: P42698 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT111 PE=1 SV=2)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-45
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPG+VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALV
Sbjct: 291 VGPGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALV 350

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF 107
           DLDGRYFGGR VRATFYDEE+FSKNELAP+PGE+PG+
Sbjct: 351 DLDGRYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387

[Close]

BLAST of Lsi01G000860 vs. ExPASy Swiss-Prot
Match: Q96I25 (Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-21
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VG GEVD++LE E   EC KYG V + +IFEI  P  P DEAVRIF++FER E   KA+V
Sbjct: 313 VGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PGAPDDEAVRIFLEFERVESAIKAVV 372

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELA 98
           DL+GRYFGGRVV+A FY+ ++F   +LA
Sbjct: 373 DLNGRYFGGRVVKACFYNLDKFRVLDLA 398

[Close]

BLAST of Lsi01G000860 vs. ExPASy Swiss-Prot
Match: Q8JZX4 (Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-21
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VG GEVD++LE E   EC KYG V + +IFEI  P  P DEAVRIF++FER E   KA+V
Sbjct: 317 VGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PGAPDDEAVRIFLEFERVESAIKAVV 376

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELA 98
           DL+GRYFGGRVV+A FY+ ++F   +LA
Sbjct: 377 DLNGRYFGGRVVKACFYNLDKFRVLDLA 402

[Close]

BLAST of Lsi01G000860 vs. ExPASy Swiss-Prot
Match: Q2HJG2 (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.5e-15
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKAL 69
           V P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  + ET KA+
Sbjct: 441 VDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAI 500

Query: 70  VDLDGRYFGGRVVRATFYDEERFSKNELA 98
            DL+GR+F GR V A  YD+ERF  ++L+
Sbjct: 501 QDLNGRWFAGRKVVAEVYDQERFDNSDLS 529

[Close]

BLAST of Lsi01G000860 vs. ExPASy Swiss-Prot
Match: Q3UEB3 (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 7.5e-15
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERSEETTKAL 69
           V P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  + ET KA+
Sbjct: 475 VDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAI 534

Query: 70  VDLDGRYFGGRVVRATFYDEERFSKNELA 98
             L+GR+FGGR V A  YD+ERF  ++L+
Sbjct: 535 QALNGRWFGGRKVVAEVYDQERFDNSDLS 563

[Close]

BLAST of Lsi01G000860 vs. ExPASy TrEMBL
Match: A0A5A7UAU7 (DNA-damage-repair/toleration protein DRT111 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009550 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.3e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 231 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 290

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Sbjct: 291 DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 328

[Close]

BLAST of Lsi01G000860 vs. ExPASy TrEMBL
Match: A0A0A0KP45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.3e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 275 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 334

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Sbjct: 335 DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 372

[Close]

BLAST of Lsi01G000860 vs. ExPASy TrEMBL
Match: A0A6J1D044 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015835 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.3e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 275 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 334

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Sbjct: 335 DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 372

[Close]

BLAST of Lsi01G000860 vs. ExPASy TrEMBL
Match: A0A1S3AYL8 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484318 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.3e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 275 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 334

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Sbjct: 335 DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 372

[Close]

BLAST of Lsi01G000860 vs. ExPASy TrEMBL
Match: A0A6J1KSL4 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111496883 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.4e-48
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 275 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 334

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDEERF KNELAPMPGEVPGFT
Sbjct: 335 DLDGRYFGGRVVRATFYDEERFGKNELAPMPGEVPGFT 372

[Close]

BLAST of Lsi01G000860 vs. NCBI nr
Match: XP_022146691.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 275 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 334

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Sbjct: 335 DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 372

[Close]

BLAST of Lsi01G000860 vs. NCBI nr
Match: XP_008439555.1 (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis melo])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 275 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 334

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Sbjct: 335 DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 372

[Close]

BLAST of Lsi01G000860 vs. NCBI nr
Match: XP_004134609.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus] >KGN49456.1 hypothetical protein Csa_003083 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 275 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 334

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Sbjct: 335 DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 372

[Close]

BLAST of Lsi01G000860 vs. NCBI nr
Match: KAA0052494.1 (DNA-damage-repair/toleration protein DRT111 [Cucumis melo var. makuwa] >TYK13330.1 DNA-damage-repair/toleration protein DRT111 [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 231 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 290

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT
Sbjct: 291 DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 328

[Close]

BLAST of Lsi01G000860 vs. NCBI nr
Match: XP_038882071.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV
Sbjct: 275 VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 334

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT 108
           DLDGRYFGGRVVRATFYDE+RFSKNELAPMPGEVPGFT
Sbjct: 335 DLDGRYFGGRVVRATFYDEDRFSKNELAPMPGEVPGFT 372

[Close]

BLAST of Lsi01G000860 vs. TAIR 10
Match: AT1G30480.1 (D111/G-patch domain-containing protein )

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-46
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 10  VGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALV 69
           VGPG+VDDELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALV
Sbjct: 291 VGPGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALV 350

Query: 70  DLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGF 107
           DLDGRYFGGR VRATFYDEE+FSKNELAP+PGE+PG+
Sbjct: 351 DLDGRYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387

[Close]

BLAST of Lsi01G000860 vs. TAIR 10
Match: AT4G36690.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-06
Identity = 22/78 (28.21%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 18  ELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFG 77
           ++ E++  E  K+G +T V+I   +    PV    ++F+++  ++ +T+A   ++GR FG
Sbjct: 493 DIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFG 552

Query: 78  GRVVRATFYDEERFSKNE 96
           G  V A +Y E++F + +
Sbjct: 553 GNEVVAVYYPEDKFEQGD 570

[Close]

BLAST of Lsi01G000860 vs. TAIR 10
Match: AT4G36690.4 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-06
Identity = 22/78 (28.21%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 18  ELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFG 77
           ++ E++  E  K+G +T V+I   +    PV    ++F+++  ++ +T+A   ++GR FG
Sbjct: 471 DIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFG 530

Query: 78  GRVVRATFYDEERFSKNE 96
           G  V A +Y E++F + +
Sbjct: 531 GNEVVAVYYPEDKFEQGD 548

[Close]

BLAST of Lsi01G000860 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 45.1 bits (105), Expect = 4.2e-05
Identity = 21/88 (23.86%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 4   LFDFSKVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEE 63
           +FD S     + D++++E+V  EC+K+G +  + + +        +    ++++FE ++ 
Sbjct: 472 MFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK--------NSVGFVYLRFENAQA 531

Query: 64  TTKALVDLDGRYFGGRVVRATFYDEERF 92
              A   L GR+F G+++ AT+   E +
Sbjct: 532 AIGAQRALHGRWFAGKMITATYMTTEAY 551

[Close]

BLAST of Lsi01G000860 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 45.1 bits (105), Expect = 4.2e-05
Identity = 21/88 (23.86%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 4   LFDFSKVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEE 63
           +FD S     + D++++E+V  EC+K+G +  + + +        +    ++++FE ++ 
Sbjct: 510 MFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK--------NSVGFVYLRFENAQA 569

Query: 64  TTKALVDLDGRYFGGRVVRATFYDEERF 92
              A   L GR+F G+++ AT+   E +
Sbjct: 570 AIGAQRALHGRWFAGKMITATYMTTEAY 589

The following BLAST results are available for this feature:

BLAST of Lsi01G000860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42698	2.4e-45	87.63	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thalia...	[more]
Q96I25	2.4e-21	59.09	Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1	[more]
Q8JZX4	2.4e-21	59.09	Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1	[more]
Q2HJG2	7.5e-15	44.94	Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1	[more]
Q3UEB3	7.5e-15	44.94	Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=...	[more]

BLAST of Lsi01G000860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAU7	8.3e-49	100.00	DNA-damage-repair/toleration protein DRT111 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KP45	8.3e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1	[more]
A0A6J1D044	8.3e-49	100.00	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charanti...	[more]
A0A1S3AYL8	8.3e-49	100.00	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=36...	[more]
A0A6J1KSL4	2.4e-48	98.98	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita max...	[more]

BLAST of Lsi01G000860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146691.1	1.7e-48	100.00	DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia]	[more]
XP_008439555.1	1.7e-48	100.00	PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis m...	[more]
XP_004134609.1	1.7e-48	100.00	DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus] >KG...	[more]
KAA0052494.1	1.7e-48	100.00	DNA-damage-repair/toleration protein DRT111 [Cucumis melo var. makuwa] >TYK13330...	[more]
XP_038882071.1	3.8e-48	98.98	DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida]	[more]

BLAST of Lsi01G000860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30480.1	1.7e-46	87.63	D111/G-patch domain-containing protein	[more]
AT4G36690.1	2.9e-06	28.21	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.4	2.9e-06	28.21	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT2G16940.1	4.2e-05	23.86	Splicing factor, CC1-like	[more]
AT2G16940.3	4.2e-05	23.86	Splicing factor, CC1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 3..84 e-value: 5.4E-22 score: 89.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..87 e-value: 8.5E-22 score: 79.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 28..82 e-value: 5.1E-5 score: 23.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..88 score: 8.705814
IPR040052	Splicing factor 45	PANTHER	PTHR13288	SPLICING FACTOR 45 SPF45	coord: 10..98
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G000860.1	Lsi01G000860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0043484	regulation of RNA splicing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding