Lsi01G000410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G000410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-H2 finger protein ATL74-like
Location	chr01: 454432 .. 454938 (-)
RNA-Seq Expression	Lsi01G000410
Synteny	Lsi01G000410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGGTTCTTCGTTCATGGAGCCTTCGTCTTCTCCTTCCCTTAATCCATCGCCAAGCGTATCTATCCCGGATGCTTGCGACCAAGAACAAGGTGGCAACTTCAACCTCATTGTCATCGTGGTTGCGATTGTTTGCGCTGTTGTTTGTGCACTTGGTCTAAATAGCATGCTGATATGTATACTTCAATGCGCCAATCACACCCTCAGACAAACAGTCCAATGGGTGGCTTTAAGGGGACTGAACTCAGGCATGAAGAAGCAAGACGTGGTTGCCTTGCCAACTTCAACTTACACGAATTCTGGCTCACTGACTTCGCCTTCATCGAATCCGGCCTGTGCTATCTGCCTCGTTGATTTCTCTAACGGGGATAAAATACGGGTGTTGCCGAACTGCGCTCACAGGTACCATGTCACTTGCATTGATCAATGGCTGCTGTCTCACTCTTCTTGCCCCACTTGCAGGCATCAGCTGAAGTCCAAGGATTCTATAGAACACATTGTGTAA

mRNA sequence

ATGCTCGGTTCTTCGTTCATGGAGCCTTCGTCTTCTCCTTCCCTTAATCCATCGCCAAGCGTATCTATCCCGGATGCTTGCGACCAAGAACAAGGTGGCAACTTCAACCTCATTGTCATCGTGGTTGCGATTGTTTGCGCTGTTGTTTGTGCACTTGGTCTAAATAGCATGCTGATATGTATACTTCAATGCGCCAATCACACCCTCAGACAAACAGTCCAATGGGTGGCTTTAAGGGGACTGAACTCAGGCATGAAGAAGCAAGACGTGGTTGCCTTGCCAACTTCAACTTACACGAATTCTGGCTCACTGACTTCGCCTTCATCGAATCCGGCCTGTGCTATCTGCCTCGTTGATTTCTCTAACGGGGATAAAATACGGGTGTTGCCGAACTGCGCTCACAGGTACCATGTCACTTGCATTGATCAATGGCTGCTGTCTCACTCTTCTTGCCCCACTTGCAGGCATCAGCTGAAGTCCAAGGATTCTATAGAACACATTGTGTAA

Coding sequence (CDS)

ATGCTCGGTTCTTCGTTCATGGAGCCTTCGTCTTCTCCTTCCCTTAATCCATCGCCAAGCGTATCTATCCCGGATGCTTGCGACCAAGAACAAGGTGGCAACTTCAACCTCATTGTCATCGTGGTTGCGATTGTTTGCGCTGTTGTTTGTGCACTTGGTCTAAATAGCATGCTGATATGTATACTTCAATGCGCCAATCACACCCTCAGACAAACAGTCCAATGGGTGGCTTTAAGGGGACTGAACTCAGGCATGAAGAAGCAAGACGTGGTTGCCTTGCCAACTTCAACTTACACGAATTCTGGCTCACTGACTTCGCCTTCATCGAATCCGGCCTGTGCTATCTGCCTCGTTGATTTCTCTAACGGGGATAAAATACGGGTGTTGCCGAACTGCGCTCACAGGTACCATGTCACTTGCATTGATCAATGGCTGCTGTCTCACTCTTCTTGCCCCACTTGCAGGCATCAGCTGAAGTCCAAGGATTCTATAGAACACATTGTGTAA

Protein sequence

MLGSSFMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICILQCANHTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLVDFSNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQLKSKDSIEHIV

Homology

[Close]

BLAST of Lsi01G000410 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-22
Identity = 55/152 (36.18%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 18  SPSVSIPDACDQEQGGNF-----------NLIVIVVAIVCAVVCALGLNSMLICILQCAN 77
           +P++S  DA  +  G +            ++++I+ A++CA++CALG+NS+L C+L+C  
Sbjct: 11  TPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTR 70

Query: 78  HTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLVDFSNGDKI 137
                         +  G+KK+ +  +P  +Y+    + +      C ICL DF  G+ +
Sbjct: 71  RFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPELKMKATE----CLICLGDFVEGETV 130

Query: 138 RVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQL 159
           RVLP C H +HV CID WLLSHSSCPTCR  L
Sbjct: 131 RVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158

[Close]

BLAST of Lsi01G000410 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-22
Identity = 54/135 (40.00%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 25  DACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICILQCA-NHTLRQTVQWVALRGLNS 84
           D   ++   + N+++I+ A++CA++ ALGLNS+L C ++C    +       VA R   +
Sbjct: 22  DGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADR---A 81

Query: 85  GMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLVDFSNGDKIRVLPNCAHRYHVTCIDQ 144
           G+KK+++   P + Y  SG +   ++   CAICL +F++G+++RVLP C H +H++CID 
Sbjct: 82  GLKKRELKKFPVAEY-GSGEVKIAATE--CAICLGEFADGERVRVLPPCNHSFHMSCIDT 141

Query: 145 WLLSHSSCPTCRHQL 159
           WL+SHSSCP CRH L
Sbjct: 142 WLVSHSSCPNCRHSL 150

[Close]

BLAST of Lsi01G000410 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-21
Identity = 62/165 (37.58%), Postives = 97/165 (58.79%), Query Frame = 0


Query: 1   MLGSS------FMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGL 60
           +LGSS      F     SP+  PSP V        +   + N+++++  ++CA+VC+LGL
Sbjct: 21  ILGSSYSRKLLFHTHDQSPTPAPSPYVG-------DNNFDANVVMVLSVLLCALVCSLGL 80

Query: 61  NSMLICILQCANHTLRQT-VQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPAC 120
           NS++ C L+C+N    +       +R  N+G+K++ + +  T +Y  S  L  P  +  C
Sbjct: 81  NSIIRCALRCSNLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSY--STELNLPGLDTEC 140

Query: 121 AICLVDFSNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQL 159
           AICL +F   +++++LP C H +HV CID+WL SHSSCPTCRH L
Sbjct: 141 AICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCL 176

[Close]

BLAST of Lsi01G000410 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-21
Identity = 62/165 (37.58%), Postives = 91/165 (55.15%), Query Frame = 0


Query: 2   LGSSFMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICI 61
           +G   +EP ++   N +P    P     +   + N+++I+ A++CA++CAL LNS L C+
Sbjct: 1   MGRLLLEPQANAPANANPK---PKGGINDTYFDTNMVIILAALLCALICALSLNSALRCV 60

Query: 62  LQCANH-TLRQTVQWVALRGLN-------SGMKKQDVVALPTSTYTNSGSLTSPSSNPAC 121
           L+     T    V   +    N       +G+KKQ +  +P   Y  SG +   ++   C
Sbjct: 61  LRITRRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLY-GSGIIDMKATE--C 120

Query: 122 AICLVDFSNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQL 159
            ICL DF +G+K+RVLP C H +HV CID WLLS SSCPTCR  L
Sbjct: 121 LICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159

[Close]

BLAST of Lsi01G000410 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-20
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 24  PDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICILQCANHTLRQTVQWVALRGLNS 83
           P   ++      +++VI+ A++CA++C  G    L  +++CA   LR+          N 
Sbjct: 15  PQPSEEMIAAESDMVVILSALLCALICVAG----LAAVVRCA--WLRRFTAGGDSPSPNK 74

Query: 84  GMKKQDVVALPTSTYT----NSGSLTSPSSNPACAICLVDFSNGDKIRVLPNCAHRYHVT 143
           G+KK+ + +LP ST+T     SG+      +  CAICL DF++G++IRVLP C H +HV 
Sbjct: 75  GLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVE 134

Query: 144 CIDQWLLSHSSCPTCRHQL 159
           CID+WL+S SSCP+CR  L
Sbjct: 135 CIDKWLVSRSSCPSCRRIL 147

[Close]

BLAST of Lsi01G000410 vs. ExPASy TrEMBL
Match: A0A5A7UAN6 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010060 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.6e-78
Identity = 150/168 (89.29%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MLGSSFMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLIC 60
           ML SSFMEPSSSPSLNPSPSVSI D  + E GGNFNLIVIVVAIVCAVVC LGLN+MLIC
Sbjct: 1   MLTSSFMEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLIC 60

Query: 61  ILQCANHTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLVDF 120
           ILQCANH+ RQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGS TSPSS  ACAICL+DF
Sbjct: 61  ILQCANHSFRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSSTSACAICLIDF 120

Query: 121 SNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQLKSKDSIEHIV 169
           SNGD IRVLPNCAHRYHV+CID+WLLSHSSCPTCRHQLKSKDSIEHIV
Sbjct: 121 SNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 168

[Close]

BLAST of Lsi01G000410 vs. ExPASy TrEMBL
Match: A0A1S3AYW1 (RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103484271 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.1e-77
Identity = 151/170 (88.82%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MLGSSFMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLIC 60
           ML SSFMEPSSSPSLNPSPSVSI D  + E GGNFNLIVIVVAIVCAVVC LGLN+MLIC
Sbjct: 1   MLTSSFMEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLIC 60

Query: 61  ILQCANHTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLT--SPSSNPACAICLV 120
           ILQCANH+LRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGS T  SPSS  ACAICL+
Sbjct: 61  ILQCANHSLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLI 120

Query: 121 DFSNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQLKSKDSIEHIV 169
           DFSNGD IRVLPNCAHRYHV+CID+WLLSHSSCPTCRHQLKSKDSIEHIV
Sbjct: 121 DFSNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 170

[Close]

BLAST of Lsi01G000410 vs. ExPASy TrEMBL
Match: A0A0A0KJ24 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526420 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 145/168 (86.31%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MLGSSFMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLIC 60
           ML SSFMEPS SPSLNPSPSVSI D  +   GGNFNLIV+VVAIVCAVVC LGLN+MLIC
Sbjct: 1   MLASSFMEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLIC 60

Query: 61  ILQCANHTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLVDF 120
           ILQCANH+LRQTVQWVALRGLNSGMKKQD+VALPTSTYTNSGS  SPSS  ACAICL+DF
Sbjct: 61  ILQCANHSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDF 120

Query: 121 SNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQLKSKDSIEHIV 169
           SNGDK+RVLPNCAHRYHV+CID+WLLSHSSCPTCRHQLKSKDSI+HIV
Sbjct: 121 SNGDKVRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 168

[Close]

BLAST of Lsi01G000410 vs. ExPASy TrEMBL
Match: A0A6J1ILJ0 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111478116 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.2e-67
Identity = 138/174 (79.31%), Postives = 145/174 (83.33%), Query Frame = 0


Query: 1   MLGSSFMEPSSS--PSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSML 60
           MLGSS+MEPSSS  PS NP PSVS     DQEQG NFNL+VIV AIVCAVVC LGLN+ML
Sbjct: 13  MLGSSYMEPSSSPTPSFNPLPSVSFAYPHDQEQGSNFNLVVIVAAIVCAVVCTLGLNTML 72

Query: 61  ICILQCANHTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLV 120
            CILQCANHTLRQTVQWVALRGLN GMKKQD++ALPTSTYTNS S TS     ACAICLV
Sbjct: 73  TCILQCANHTLRQTVQWVALRGLNLGMKKQDMIALPTSTYTNSDSPTS-----ACAICLV 132

Query: 121 DFSNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQLK----SKDSIEHIV 169
           DFSNGDK+R+LPNCAHRYHV CIDQWLLSHSSCPTCRHQLK    S  SI HIV
Sbjct: 133 DFSNGDKLRMLPNCAHRYHVACIDQWLLSHSSCPTCRHQLKPPKDSATSIHHIV 181

[Close]

BLAST of Lsi01G000410 vs. ExPASy TrEMBL
Match: E5GCL9 (Ring zinc finger OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.2e-66
Identity = 129/146 (88.36%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 25  DACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICILQCANHTLRQTVQWVALRGLNSG 84
           D  + E GGNFNLIVIVVAIVCAVVC LGLN+MLICILQCANH+LRQTVQWVALRGLNSG
Sbjct: 2   DPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG 61

Query: 85  MKKQDVVALPTSTYTNSGSLT--SPSSNPACAICLVDFSNGDKIRVLPNCAHRYHVTCID 144
           MKKQDVVALPTSTYTNSGS T  SPSS  ACAICL+DFSNGD IRVLPNCAHRYHV+CID
Sbjct: 62  MKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLIDFSNGDTIRVLPNCAHRYHVSCID 121

Query: 145 QWLLSHSSCPTCRHQLKSKDSIEHIV 169
           +WLLSHSSCPTCRHQLKSKDSIEHIV
Sbjct: 122 KWLLSHSSCPTCRHQLKSKDSIEHIV 147

[Close]

BLAST of Lsi01G000410 vs. NCBI nr
Match: KAA0052444.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa] >TYK13378.1 RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 9.4e-78
Identity = 150/168 (89.29%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MLGSSFMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLIC 60
           ML SSFMEPSSSPSLNPSPSVSI D  + E GGNFNLIVIVVAIVCAVVC LGLN+MLIC
Sbjct: 1   MLTSSFMEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLIC 60

Query: 61  ILQCANHTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLVDF 120
           ILQCANH+ RQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGS TSPSS  ACAICL+DF
Sbjct: 61  ILQCANHSFRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSSTSACAICLIDF 120

Query: 121 SNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQLKSKDSIEHIV 169
           SNGD IRVLPNCAHRYHV+CID+WLLSHSSCPTCRHQLKSKDSIEHIV
Sbjct: 121 SNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 168

[Close]

BLAST of Lsi01G000410 vs. NCBI nr
Match: XP_008439485.1 (PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76
Identity = 151/170 (88.82%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MLGSSFMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLIC 60
           ML SSFMEPSSSPSLNPSPSVSI D  + E GGNFNLIVIVVAIVCAVVC LGLN+MLIC
Sbjct: 1   MLTSSFMEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLIC 60

Query: 61  ILQCANHTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLT--SPSSNPACAICLV 120
           ILQCANH+LRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGS T  SPSS  ACAICL+
Sbjct: 61  ILQCANHSLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLI 120

Query: 121 DFSNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQLKSKDSIEHIV 169
           DFSNGD IRVLPNCAHRYHV+CID+WLLSHSSCPTCRHQLKSKDSIEHIV
Sbjct: 121 DFSNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 170

[Close]

BLAST of Lsi01G000410 vs. NCBI nr
Match: KAE8647779.1 (hypothetical protein Csa_003277 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-73
Identity = 140/162 (86.42%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 7   MEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICILQCAN 66
           MEPS SPSLNPSPSVSI D  +   GGNFNLIV+VVAIVCAVVC LGLN+MLICILQCAN
Sbjct: 1   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 60

Query: 67  HTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLVDFSNGDKI 126
           H+LRQTVQWVALRGLNSGMKKQD+VALPTSTYTNSGS  SPSS  ACAICL+DFSNGDK+
Sbjct: 61  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 120

Query: 127 RVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQLKSKDSIEHIV 169
           RVLPNCAHRYHV+CID+WLLSHSSCPTCRHQLKSKDSI+HIV
Sbjct: 121 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 162

[Close]

BLAST of Lsi01G000410 vs. NCBI nr
Match: XP_022977991.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 138/174 (79.31%), Postives = 145/174 (83.33%), Query Frame = 0


Query: 1   MLGSSFMEPSSS--PSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSML 60
           MLGSS+MEPSSS  PS NP PSVS     DQEQG NFNL+VIV AIVCAVVC LGLN+ML
Sbjct: 13  MLGSSYMEPSSSPTPSFNPLPSVSFAYPHDQEQGSNFNLVVIVAAIVCAVVCTLGLNTML 72

Query: 61  ICILQCANHTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLV 120
            CILQCANHTLRQTVQWVALRGLN GMKKQD++ALPTSTYTNS S TS     ACAICLV
Sbjct: 73  TCILQCANHTLRQTVQWVALRGLNLGMKKQDMIALPTSTYTNSDSPTS-----ACAICLV 132

Query: 121 DFSNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQLK----SKDSIEHIV 169
           DFSNGDK+R+LPNCAHRYHV CIDQWLLSHSSCPTCRHQLK    S  SI HIV
Sbjct: 133 DFSNGDKLRMLPNCAHRYHVACIDQWLLSHSSCPTCRHQLKPPKDSATSIHHIV 181

[Close]

BLAST of Lsi01G000410 vs. NCBI nr
Match: ADN34219.1 (ring zinc finger [Cucumis melo subsp. melo])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 129/146 (88.36%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 25  DACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICILQCANHTLRQTVQWVALRGLNSG 84
           D  + E GGNFNLIVIVVAIVCAVVC LGLN+MLICILQCANH+LRQTVQWVALRGLNSG
Sbjct: 2   DPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG 61

Query: 85  MKKQDVVALPTSTYTNSGSLT--SPSSNPACAICLVDFSNGDKIRVLPNCAHRYHVTCID 144
           MKKQDVVALPTSTYTNSGS T  SPSS  ACAICL+DFSNGD IRVLPNCAHRYHV+CID
Sbjct: 62  MKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLIDFSNGDTIRVLPNCAHRYHVSCID 121

Query: 145 QWLLSHSSCPTCRHQLKSKDSIEHIV 169
           +WLLSHSSCPTCRHQLKSKDSIEHIV
Sbjct: 122 KWLLSHSSCPTCRHQLKSKDSIEHIV 147

[Close]

BLAST of Lsi01G000410 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 55/152 (36.18%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 18  SPSVSIPDACDQEQGGNF-----------NLIVIVVAIVCAVVCALGLNSMLICILQCAN 77
           +P++S  DA  +  G +            ++++I+ A++CA++CALG+NS+L C+L+C  
Sbjct: 11  TPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTR 70

Query: 78  HTLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLVDFSNGDKI 137
                         +  G+KK+ +  +P  +Y+    + +      C ICL DF  G+ +
Sbjct: 71  RFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPELKMKATE----CLICLGDFVEGETV 130

Query: 138 RVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQL 159
           RVLP C H +HV CID WLLSHSSCPTCR  L
Sbjct: 131 RVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158

[Close]

BLAST of Lsi01G000410 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-23
Identity = 54/135 (40.00%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 25  DACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICILQCA-NHTLRQTVQWVALRGLNS 84
           D   ++   + N+++I+ A++CA++ ALGLNS+L C ++C    +       VA R   +
Sbjct: 22  DGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADR---A 81

Query: 85  GMKKQDVVALPTSTYTNSGSLTSPSSNPACAICLVDFSNGDKIRVLPNCAHRYHVTCIDQ 144
           G+KK+++   P + Y  SG +   ++   CAICL +F++G+++RVLP C H +H++CID 
Sbjct: 82  GLKKRELKKFPVAEY-GSGEVKIAATE--CAICLGEFADGERVRVLPPCNHSFHMSCIDT 141

Query: 145 WLLSHSSCPTCRHQL 159
           WL+SHSSCP CRH L
Sbjct: 142 WLVSHSSCPNCRHSL 150

[Close]

BLAST of Lsi01G000410 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 7.1e-23
Identity = 62/165 (37.58%), Postives = 97/165 (58.79%), Query Frame = 0


Query: 1   MLGSS------FMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGL 60
           +LGSS      F     SP+  PSP V        +   + N+++++  ++CA+VC+LGL
Sbjct: 21  ILGSSYSRKLLFHTHDQSPTPAPSPYVG-------DNNFDANVVMVLSVLLCALVCSLGL 80

Query: 61  NSMLICILQCANHTLRQT-VQWVALRGLNSGMKKQDVVALPTSTYTNSGSLTSPSSNPAC 120
           NS++ C L+C+N    +       +R  N+G+K++ + +  T +Y  S  L  P  +  C
Sbjct: 81  NSIIRCALRCSNLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSY--STELNLPGLDTEC 140

Query: 121 AICLVDFSNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQL 159
           AICL +F   +++++LP C H +HV CID+WL SHSSCPTCRH L
Sbjct: 141 AICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCL 176

[Close]

BLAST of Lsi01G000410 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-22
Identity = 62/165 (37.58%), Postives = 91/165 (55.15%), Query Frame = 0


Query: 2   LGSSFMEPSSSPSLNPSPSVSIPDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICI 61
           +G   +EP ++   N +P    P     +   + N+++I+ A++CA++CAL LNS L C+
Sbjct: 1   MGRLLLEPQANAPANANPK---PKGGINDTYFDTNMVIILAALLCALICALSLNSALRCV 60

Query: 62  LQCANH-TLRQTVQWVALRGLN-------SGMKKQDVVALPTSTYTNSGSLTSPSSNPAC 121
           L+     T    V   +    N       +G+KKQ +  +P   Y  SG +   ++   C
Sbjct: 61  LRITRRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLY-GSGIIDMKATE--C 120

Query: 122 AICLVDFSNGDKIRVLPNCAHRYHVTCIDQWLLSHSSCPTCRHQL 159
            ICL DF +G+K+RVLP C H +HV CID WLLS SSCPTCR  L
Sbjct: 121 LICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159

[Close]

BLAST of Lsi01G000410 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-21
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 24  PDACDQEQGGNFNLIVIVVAIVCAVVCALGLNSMLICILQCANHTLRQTVQWVALRGLNS 83
           P   ++      +++VI+ A++CA++C  G    L  +++CA   LR+          N 
Sbjct: 15  PQPSEEMIAAESDMVVILSALLCALICVAG----LAAVVRCA--WLRRFTAGGDSPSPNK 74

Query: 84  GMKKQDVVALPTSTYT----NSGSLTSPSSNPACAICLVDFSNGDKIRVLPNCAHRYHVT 143
           G+KK+ + +LP ST+T     SG+      +  CAICL DF++G++IRVLP C H +HV 
Sbjct: 75  GLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVE 134

Query: 144 CIDQWLLSHSSCPTCRHQL 159
           CID+WL+S SSCP+CR  L
Sbjct: 135 CIDKWLVSRSSCPSCRRIL 147

The following BLAST results are available for this feature:

BLAST of Lsi01G000410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLC6	4.5e-22	36.18	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	5.8e-22	40.00	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	1.0e-21	37.58	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q9SG96	2.9e-21	37.58	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
O22755	2.5e-20	38.85	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]

BLAST of Lsi01G000410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAN6	4.6e-78	89.29	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3AYW1	5.1e-77	88.82	RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103484271 PE=4 S...	[more]
A0A0A0KJ24	1.9e-76	86.31	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526420 P...	[more]
A0A6J1ILJ0	6.2e-67	79.31	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111478116 PE...	[more]
E5GCL9	5.2e-66	88.36	Ring zinc finger OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Lsi01G000410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052444.1	9.4e-78	89.29	RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa] >TYK13378.1 RING-H2...	[more]
XP_008439485.1	1.0e-76	88.82	PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo]	[more]
KAE8647779.1	1.8e-73	86.42	hypothetical protein Csa_003277 [Cucumis sativus]	[more]
XP_022977991.1	1.3e-66	79.31	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]
ADN34219.1	1.1e-65	88.36	ring zinc finger [Cucumis melo subsp. melo]	[more]

BLAST of Lsi01G000410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05280.1	3.2e-23	36.18	RING/U-box superfamily protein	[more]
AT5G01880.1	4.2e-23	40.00	RING/U-box superfamily protein	[more]
AT1G49230.1	7.1e-23	37.58	RING/U-box superfamily protein	[more]
AT3G10910.1	2.1e-22	37.58	RING/U-box superfamily protein	[more]
AT2G17450.1	1.7e-21	38.85	RING-H2 finger A3A	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 113..154 e-value: 3.4E-6 score: 36.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 112..155 e-value: 2.9E-13 score: 49.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 113..155 score: 11.987676
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 75..161 e-value: 5.0E-22 score: 79.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 25..165
None	No IPR available	PANTHER	PTHR45798:SF33	OS06G0666500 PROTEIN	coord: 25..165
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 113..155 e-value: 8.59956E-17 score: 68.0973
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 112..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G000410.1	Lsi01G000410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane