Lsi01G000390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G000390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	VQ domain-containing protein
Location	chr01: 446290 .. 446838 (+)
RNA-Seq Expression	Lsi01G000390
Synteny	Lsi01G000390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCACCAGCGATCAATGGGGCGCCCAATTCTACCACCATGCCCACGGCGCCGCCTCGCCTTCTTCCGCCGTCACCCACCACGGCCCCAATACTAACACTAACTCCATTTCCAAGCCCAGACGCCGCTCCAGAGCTTCCCGTAAGGCGCCGACCACGCTGCTCAACGCCAGCACCGCCAATTTCAGGGACTTGGTGCAGCAGTTCACGGGGTTTCAGGCCGCCGGCGCCACCTTGCCTTTGGGCAGCCACAAGGGTCCGGTCAACCTCAGCTTCGGCCGGGCTGGAGATGATCACCTCCATAACAACCACCCCTCTGTTATGCTCCCTTTCTCCGACGGCCGACTTCTTCAACTCCGACAGCCGCCGCCGGAGCACCGGTTCCCCAACCCCCCGGAAAATAATGGGTTTTCACGGCAGGCGGCGGAATTGATGGAAATTCAAAATCTGATTGATGAGGATTTCAATTACGATCTGCAGGAACTGGGGATGGAGTTTTCTTCTTCCAGTGGGAATGGGAATTACGGCGGTGGGTACTTCCATTGA

mRNA sequence

ATGTCTATCACCAGCGATCAATGGGGCGCCCAATTCTACCACCATGCCCACGGCGCCGCCTCGCCTTCTTCCGCCGTCACCCACCACGGCCCCAATACTAACACTAACTCCATTTCCAAGCCCAGACGCCGCTCCAGAGCTTCCCGTAAGGCGCCGACCACGCTGCTCAACGCCAGCACCGCCAATTTCAGGGACTTGGTGCAGCAGTTCACGGGGTTTCAGGCCGCCGGCGCCACCTTGCCTTTGGGCAGCCACAAGGGTCCGGTCAACCTCAGCTTCGGCCGGGCTGGAGATGATCACCTCCATAACAACCACCCCTCTGTTATGCTCCCTTTCTCCGACGGCCGACTTCTTCAACTCCGACAGCCGCCGCCGGAGCACCGGTTCCCCAACCCCCCGGAAAATAATGGGTTTTCACGGCAGGCGGCGGAATTGATGGAAATTCAAAATCTGATTGATGAGGATTTCAATTACGATCTGCAGGAACTGGGGATGGAGTTTTCTTCTTCCAGTGGGAATGGGAATTACGGCGGTGGGTACTTCCATTGA

Coding sequence (CDS)

ATGTCTATCACCAGCGATCAATGGGGCGCCCAATTCTACCACCATGCCCACGGCGCCGCCTCGCCTTCTTCCGCCGTCACCCACCACGGCCCCAATACTAACACTAACTCCATTTCCAAGCCCAGACGCCGCTCCAGAGCTTCCCGTAAGGCGCCGACCACGCTGCTCAACGCCAGCACCGCCAATTTCAGGGACTTGGTGCAGCAGTTCACGGGGTTTCAGGCCGCCGGCGCCACCTTGCCTTTGGGCAGCCACAAGGGTCCGGTCAACCTCAGCTTCGGCCGGGCTGGAGATGATCACCTCCATAACAACCACCCCTCTGTTATGCTCCCTTTCTCCGACGGCCGACTTCTTCAACTCCGACAGCCGCCGCCGGAGCACCGGTTCCCCAACCCCCCGGAAAATAATGGGTTTTCACGGCAGGCGGCGGAATTGATGGAAATTCAAAATCTGATTGATGAGGATTTCAATTACGATCTGCAGGAACTGGGGATGGAGTTTTCTTCTTCCAGTGGGAATGGGAATTACGGCGGTGGGTACTTCCATTGA

Protein sequence

MSITSDQWGAQFYHHAHGAASPSSAVTHHGPNTNTNSISKPRRRSRASRKAPTTLLNASTANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLLQLRQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYGGGYFH

Homology

[Close]

BLAST of Lsi01G000390 vs. ExPASy Swiss-Prot
Match: Q9LIE6 (VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.2e-05
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 6  DQWGAQFYHH------AHGAASPSSAVTHHGPNTN--------TNSISKP-RRRSRASRK 65
          ++W +QFY++          AS +   T  G  T+        T  ++KP RRRSRASR+
Sbjct: 5  NEW-SQFYNNNQTFFTTSTTASTAVTTTTAGDTTSIDSRLSPETGRVTKPTRRRSRASRR 64

Query: 66 APTTLLNASTANFRDLVQQFTGFQAAGA 79
           PTTLLN  T+NFR +VQQ+TG  +A A
Sbjct: 65 TPTTLLNTDTSNFRAMVQQYTGGPSAMA 91

[Close]

BLAST of Lsi01G000390 vs. ExPASy TrEMBL
Match: A0A5D3CPL3 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010080 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.8e-81
Identity = 158/184 (85.87%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MSITSDQWGAQFY-HHAHGAASPSSAVTHHGPNT-NTNSISKPRRRSRASRKAPTTLLNA 60
           MSITSDQWG QFY HH+HG+AS SSAV HHGPNT N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWGTQFYAHHSHGSASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 61  STANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLL 120
           ST+NFRDLVQQFTGF AAGA+LPLGSHKGPVNLSFG+ GDDHLHNNHPSVMLPFSDGRLL
Sbjct: 61  STSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQGGDDHLHNNHPSVMLPFSDGRLL 120

Query: 121 QLRQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYGG 180
           Q RQ PPE RFP   E+NGFS   AELMEI+NLIDED +YDLQELGMEFSSSSGNGNYGG
Sbjct: 121 QRRQQPPEQRFPVAAESNGFSVPGAELMEIENLIDEDLSYDLQELGMEFSSSSGNGNYGG 180

Query: 181 GYFH 183
           GYFH
Sbjct: 181 GYFH 184

[Close]

BLAST of Lsi01G000390 vs. ExPASy TrEMBL
Match: E5GCL8 (VQ domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 158/184 (85.87%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MSITSDQWGAQFY-HHAHGAASPSSAVTHHGPNT-NTNSISKPRRRSRASRKAPTTLLNA 60
           MSITSDQWG QFY HH+HG AS SSAV HHGPNT N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWGTQFYAHHSHGGASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 61  STANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLL 120
           ST+NFRDLVQQFTGF AAGA+LPLGSHKGPVNLSFG+ GDDHLHNNHPSVMLPFSDGRLL
Sbjct: 61  STSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQDGDDHLHNNHPSVMLPFSDGRLL 120

Query: 121 QLRQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYGG 180
           Q RQ PPE RFP   E+NGFS   AELMEI+NLIDED +YDLQELGMEFSSSSGNGNYGG
Sbjct: 121 QRRQQPPEQRFPVAAESNGFSVPGAELMEIENLIDEDLSYDLQELGMEFSSSSGNGNYGG 180

Query: 181 GYFH 183
           GYFH
Sbjct: 181 GYFH 184

[Close]

BLAST of Lsi01G000390 vs. ExPASy TrEMBL
Match: A0A1S3B3C3 (uncharacterized protein LOC103485295 OS=Cucumis melo OX=3656 GN=LOC103485295 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 158/184 (85.87%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MSITSDQWGAQFY-HHAHGAASPSSAVTHHGPNT-NTNSISKPRRRSRASRKAPTTLLNA 60
           MSITSDQWG QFY HH+HG AS SSAV HHGPNT N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWGTQFYAHHSHGGASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 61  STANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLL 120
           ST+NFRDLVQQFTGF AAGA+LPLGSHKGPVNLSFG+ GDDHLHNNHPSVMLPFSDGRLL
Sbjct: 61  STSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQDGDDHLHNNHPSVMLPFSDGRLL 120

Query: 121 QLRQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYGG 180
           Q RQ PPE RFP   E+NGFS   AELMEI+NLIDED +YDLQELGMEFSSSSGNGNYGG
Sbjct: 121 QRRQQPPEQRFPVAAESNGFSVPGAELMEIENLIDEDLSYDLQELGMEFSSSSGNGNYGG 180

Query: 181 GYFH 183
           GYFH
Sbjct: 181 GYFH 184

[Close]

BLAST of Lsi01G000390 vs. ExPASy TrEMBL
Match: A0A0A0KII5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526440 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.6e-76
Identity = 154/187 (82.35%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MSITSDQWGAQFY-HHAHGAASPSSAVTHHGPNT-NTNSISKPRRRSRASRKAPTTLLNA 60
           MSITSDQW  QFY HH+HG  S SSAV HHGPNT N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWATQFYGHHSHGGVSTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 61  STANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLL 120
           ST+NFRDLVQQFTGF AAGA++PLGSHKGPVNLSFG+ GDDHLHNNHPSVMLPFSDG LL
Sbjct: 61  STSNFRDLVQQFTGFHAAGASMPLGSHKGPVNLSFGQGGDDHLHNNHPSVMLPFSDGGLL 120

Query: 121 QLR-QPPPEHRFPNPPENNGFSRQAA--ELMEIQNLIDEDFNYDLQELGMEFSSSSGNGN 180
           Q R Q  PEHRFP P E+NGFS   A  +LMEIQNLIDED +YDLQELGMEF SSSGNGN
Sbjct: 121 QRRQQATPEHRFPVPVESNGFSVAGAADQLMEIQNLIDEDLSYDLQELGMEFCSSSGNGN 180

Query: 181 YGGGYFH 183
           YGGGYFH
Sbjct: 181 YGGGYFH 187

[Close]

BLAST of Lsi01G000390 vs. ExPASy TrEMBL
Match: A0A6J1IJI1 (uncharacterized protein LOC111478005 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478005 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.4e-58
Identity = 127/176 (72.16%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 2   SITSDQWGAQFYHHAHGAASPSSAVTHHGPNTNTNSISKPRRRSRASRKAPTTLLNASTA 61
           S +SDQW AQFY   HG A  S+ V    P  N NSISKPRRRSRASRKAPTTLLNASTA
Sbjct: 5   SSSSDQWRAQFY--THGGAPSSTTVPRDAP--NNNSISKPRRRSRASRKAPTTLLNASTA 64

Query: 62  NFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLLQLR 121
           NFRDLVQQFTGF AAGA +P GSH+GPVNLSFG+AGD+  HNNHPSVMLPFSDGR  QLR
Sbjct: 65  NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDE-FHNNHPSVMLPFSDGRHFQLR 124

Query: 122 QPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYG 178
           + P EH  P P  N G S   AELMEIQNLIDED NYDL+ELGMEF  S+GNG  G
Sbjct: 125 ETPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNGYLG 175

[Close]

BLAST of Lsi01G000390 vs. NCBI nr
Match: XP_038881626.1 (VQ motif-containing protein 22-like [Benincasa hispida])

HSP 1 Score: 331.3 bits (848), Expect = 5.4e-87
Identity = 164/181 (90.61%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1   MSITSDQWGAQFYHHAHGAASPSSAVTHHGPNTNTNSISKPRRRSRASRKAPTTLLNAST 60
           MSITSDQW +QFYHH HG ASPSSA THHGPNTNTNSISKPRRRSRASRKAPTTLLNAST
Sbjct: 1   MSITSDQWASQFYHHPHGGASPSSATTHHGPNTNTNSISKPRRRSRASRKAPTTLLNAST 60

Query: 61  ANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLLQL 120
           ANFRDLVQQFTGFQAAGA LPLGSHKGPVNLSFG+AGDDHLHNNH SVMLPFSDG++ QL
Sbjct: 61  ANFRDLVQQFTGFQAAGAALPLGSHKGPVNLSFGQAGDDHLHNNHSSVMLPFSDGQVFQL 120

Query: 121 RQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYGGGY 180
           RQ  PEHRFP P +NNGFSR AAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYGGGY
Sbjct: 121 RQTSPEHRFPIPVQNNGFSRPAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYGGGY 180

Query: 181 F 182
           F
Sbjct: 181 F 181

[Close]

BLAST of Lsi01G000390 vs. NCBI nr
Match: KAA0052442.1 (VQ domain-containing protein [Cucumis melo var. makuwa] >TYK13380.1 VQ domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 9.9e-81
Identity = 158/184 (85.87%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MSITSDQWGAQFY-HHAHGAASPSSAVTHHGPNT-NTNSISKPRRRSRASRKAPTTLLNA 60
           MSITSDQWG QFY HH+HG+AS SSAV HHGPNT N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWGTQFYAHHSHGSASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 61  STANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLL 120
           ST+NFRDLVQQFTGF AAGA+LPLGSHKGPVNLSFG+ GDDHLHNNHPSVMLPFSDGRLL
Sbjct: 61  STSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQGGDDHLHNNHPSVMLPFSDGRLL 120

Query: 121 QLRQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYGG 180
           Q RQ PPE RFP   E+NGFS   AELMEI+NLIDED +YDLQELGMEFSSSSGNGNYGG
Sbjct: 121 QRRQQPPEQRFPVAAESNGFSVPGAELMEIENLIDEDLSYDLQELGMEFSSSSGNGNYGG 180

Query: 181 GYFH 183
           GYFH
Sbjct: 181 GYFH 184

[Close]

BLAST of Lsi01G000390 vs. NCBI nr
Match: XP_008441071.1 (PREDICTED: uncharacterized protein LOC103485295 [Cucumis melo] >ADN34217.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 309.3 bits (791), Expect = 2.2e-80
Identity = 158/184 (85.87%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MSITSDQWGAQFY-HHAHGAASPSSAVTHHGPNT-NTNSISKPRRRSRASRKAPTTLLNA 60
           MSITSDQWG QFY HH+HG AS SSAV HHGPNT N+NSISKPRRRSRASRKAPTTLLNA
Sbjct: 1   MSITSDQWGTQFYAHHSHGGASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNA 60

Query: 61  STANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLL 120
           ST+NFRDLVQQFTGF AAGA+LPLGSHKGPVNLSFG+ GDDHLHNNHPSVMLPFSDGRLL
Sbjct: 61  STSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQDGDDHLHNNHPSVMLPFSDGRLL 120

Query: 121 QLRQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGNYGG 180
           Q RQ PPE RFP   E+NGFS   AELMEI+NLIDED +YDLQELGMEFSSSSGNGNYGG
Sbjct: 121 QRRQQPPEQRFPVAAESNGFSVPGAELMEIENLIDEDLSYDLQELGMEFSSSSGNGNYGG 180

Query: 181 GYFH 183
           GYFH
Sbjct: 181 GYFH 184

[Close]

BLAST of Lsi01G000390 vs. NCBI nr
Match: KAG6581510.1 (hypothetical protein SDJN03_21512, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034801.1 hypothetical protein SDJN02_04533, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-61
Identity = 133/175 (76.00%), Postives = 141/175 (80.57%), Query Frame = 0


Query: 1   MSITSDQWGAQFYHHAHGAASPSSAVTHHGPNTNTNSISKPRRRSRASRKAPTTLLNAST 60
           +S +SDQW AQFY   HG A  S+AV    P  N NSISKPRRRSRASRKAPTTLLNAST
Sbjct: 3   ISSSSDQWRAQFY--THGGAPSSTAVPRDAP--NNNSISKPRRRSRASRKAPTTLLNAST 62

Query: 61  ANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLLQL 120
           ANFRDLVQQFTGF AAGA +P GSHKGPVNLSFG+AGD+  HNNHPSVMLPFSDGR  QL
Sbjct: 63  ANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDE-FHNNHPSVMLPFSDGRHFQL 122

Query: 121 RQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGN 176
           R+ P EH  P P  N GFS  AAELMEIQNLIDED NYDL+ELGMEF SSSGNGN
Sbjct: 123 RETPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGN 172

[Close]

BLAST of Lsi01G000390 vs. NCBI nr
Match: XP_023544848.1 (uncharacterized protein LOC111804320 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 2.4e-58
Identity = 129/175 (73.71%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 1   MSITSDQWGAQFYHHAHGAASPSSAVTHHGPNTNTNSISKPRRRSRASRKAPTTLLNAST 60
           +S +SDQW AQFY    G A  S+ V    P  N NSISKPRRRSRASRKAPTTLLNAST
Sbjct: 3   ISSSSDQWRAQFY--TLGGAPSSTTVPRDAP--NNNSISKPRRRSRASRKAPTTLLNAST 62

Query: 61  ANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVMLPFSDGRLLQL 120
           ANFRDLVQQFTGF AAGA +P GSHKGPVNLSFG+AGD+  HNNHPSVMLPFSDGR  QL
Sbjct: 63  ANFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDE-FHNNHPSVMLPFSDGRHFQL 122

Query: 121 RQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSSSGNGN 176
           R  P EH  P P    GF   AAELMEIQNLIDED NYDL+ELGMEFSSS+GNGN
Sbjct: 123 RDTPREHGVPIPQGGRGFPGAAAELMEIQNLIDEDLNYDLEELGMEFSSSNGNGN 172

[Close]

BLAST of Lsi01G000390 vs. TAIR 10
Match: AT4G20000.1 (VQ motif-containing protein )

HSP 1 Score: 55.5 bits (132), Expect = 5.3e-08
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 43  RRSRASRKA-PTTLLNASTANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFG 95
           RRSRASR+A PTTLLNA+ +NFR LVQ+FTG  A G +      KGPV L FG
Sbjct: 51  RRSRASRRAIPTTLLNANPSNFRALVQKFTGRSAGGES---NRRKGPVTLDFG 100

[Close]

BLAST of Lsi01G000390 vs. TAIR 10
Match: AT1G35830.1 (VQ motif-containing protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-06
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 31  PNTNTNSISKPRRRSRASRKAPTTLLNASTANFRDLVQQFTGFQAAGATLPLGS 85
           P    +S   PR+R+RASR+APTT+L   T+NFR +VQ+FTG  A+  + P  S
Sbjct: 89  PPPPPSSSRNPRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPFSS 142

[Close]

BLAST of Lsi01G000390 vs. TAIR 10
Match: AT4G39720.1 (VQ motif-containing protein )

HSP 1 Score: 48.9 bits (115), Expect = 5.0e-06
Identity = 55/179 (30.73%), Postives = 83/179 (46.37%), Query Frame = 0


Query: 23  SSAVTHHGPNTNTNSISKPRRRSRASRKAPTTLLNASTANFRDLVQQFTGFQAAGATLPL 82
           SSA +   P  N   I K ++RSRASR+APTT+L   T+NFR +VQ+FTG  A     PL
Sbjct: 96  SSATSSLPPTNNIGVIKKTKKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAP----PL 155

Query: 83  GSHKGPVNLS-----FG-RAGDDHLHNNHPSVMLPFSD--GRLLQLRQPPPEHRFPNPPE 142
            ++   VN +      G  +   + +N +  ++ PF+        L       ++ NP  
Sbjct: 156 FNNNSIVNTTRLNTFLGLSSSSPNTYNTNNLLLRPFAQKLTPATPLLSGSQIQQYQNP-- 215

Query: 143 NNGFSRQAAELMEIQNLIDEDFN------YDLQELGM--------EFSSSSGNGNYGGG 180
           NNGF     E M +Q L+    +      +D   LGM          ++++ NGN   G
Sbjct: 216 NNGF-----EDMNLQALLQAHISNPRSNEHDQFGLGMMQTPSTNPPTTTAAANGNINTG 263

[Close]

BLAST of Lsi01G000390 vs. TAIR 10
Match: AT3G22160.1 (VQ motif-containing protein )

HSP 1 Score: 48.5 bits (114), Expect = 6.5e-06
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 6  DQWGAQFYHH------AHGAASPSSAVTHHGPNTN--------TNSISKP-RRRSRASRK 65
          ++W +QFY++          AS +   T  G  T+        T  ++KP RRRSRASR+
Sbjct: 5  NEW-SQFYNNNQTFFTTSTTASTAVTTTTAGDTTSIDSRLSPETGRVTKPTRRRSRASRR 64

Query: 66 APTTLLNASTANFRDLVQQFTGFQAAGA 79
           PTTLLN  T+NFR +VQQ+TG  +A A
Sbjct: 65 TPTTLLNTDTSNFRAMVQQYTGGPSAMA 91

[Close]

BLAST of Lsi01G000390 vs. TAIR 10
Match: AT4G15120.1 (VQ motif-containing protein )

HSP 1 Score: 45.4 bits (106), Expect = 5.5e-05
Identity = 55/190 (28.95%), Postives = 83/190 (43.68%), Query Frame = 0


Query: 1   MSITSDQWGAQFYHHAHGAASPSSAVT---------HHGPNTNTNSISKP-RRRSRASRK 60
           M+ +++ W +QFY++     + +S VT             + +   ++KP RRRSRASR+
Sbjct: 1   MANSNNDW-SQFYNNQTFFTTATSTVTTTTTTATSADSPLSPDNRRVAKPTRRRSRASRR 60

Query: 61  APTTLLNASTANFRDLVQQFTGFQAAGATLPLGSHKGPVNLSFGRAGDDHLHNNHPSVML 120
            PTTL N  TANFR +VQQFTG  +A A     S    +  S   AG       + ++  
Sbjct: 61  TPTTLFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFSLTSSDPTAGVSSSPWQYANLQN 120

Query: 121 PFSDGRLLQLRQPPPEHRFPNPPENNGFSRQAAELMEIQNLIDEDFNYDLQELGMEFSSS 180
             +   L+Q ++P     +     NN         +   N +  D     +E      S 
Sbjct: 121 QMAHNELMQQQRP-----YMFSSSNN------VSTLSYPNAVATDGFVGAEE------SR 172

The following BLAST results are available for this feature:

BLAST of Lsi01G000390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIE6	9.2e-05	42.05	VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1	[more]

BLAST of Lsi01G000390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPL3	4.8e-81	85.87	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E5GCL8	1.1e-80	85.87	VQ domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3B3C3	1.1e-80	85.87	uncharacterized protein LOC103485295 OS=Cucumis melo OX=3656 GN=LOC103485295 PE=...	[more]
A0A0A0KII5	4.6e-76	82.35	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526440 PE=4 SV=...	[more]
A0A6J1IJI1	4.4e-58	72.16	uncharacterized protein LOC111478005 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi01G000390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881626.1	5.4e-87	90.61	VQ motif-containing protein 22-like [Benincasa hispida]	[more]
KAA0052442.1	9.9e-81	85.87	VQ domain-containing protein [Cucumis melo var. makuwa] >TYK13380.1 VQ domain-co...	[more]
XP_008441071.1	2.2e-80	85.87	PREDICTED: uncharacterized protein LOC103485295 [Cucumis melo] >ADN34217.1 hypot...	[more]
KAG6581510.1	2.3e-61	76.00	hypothetical protein SDJN03_21512, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023544848.1	2.4e-58	73.71	uncharacterized protein LOC111804320 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G000390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20000.1	5.3e-08	62.26	VQ motif-containing protein	[more]
AT1G35830.1	2.9e-06	48.15	VQ motif-containing protein	[more]
AT4G39720.1	5.0e-06	30.73	VQ motif-containing protein	[more]
AT3G22160.1	6.5e-06	42.05	VQ motif-containing protein	[more]
AT4G15120.1	5.5e-05	28.95	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 51..76 e-value: 1.7E-9 score: 37.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..54
None	No IPR available	PANTHER	PTHR33179:SF30	VQ MOTIF PROTEIN	coord: 21..108
IPR039609	VQ motif-containing protein 15/22	PANTHER	PTHR33179	VQ MOTIF-CONTAINING PROTEIN	coord: 21..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G000390.1	Lsi01G000390.1	mRNA